Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 1.4e-262 909.1 469 100.0
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 1.0e-143 514.2 472 59.7
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 7.4e-142 508.1 452 60.0
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 2.9e-130 469.5 470 54.9
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 1.4e-129 467.2 471 55.6
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 1.5e-126 457.2 474 55.5
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 9.7e-126 454.5 474 55.9
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 2.8e-125 453.0 476 53.6
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 1.4e-124 450.7 474 55.1
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 1.4e-124 450.7 472 53.6
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 3.5e-123 446.0 479 53.2
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 1.5e-121 440.7 474 54.4
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 1.5e-118 430.6 472 51.5
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 4.1e-116 422.5 471 52.2
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 1.7e-114 417.2 488 49.2
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 3.8e-114 416.0 497 50.1
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 3.8e-114 416.0 497 50.1
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 1.1e-113 414.5 476 49.8
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.2e-112 411.0 479 49.7
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.8e-111 407.1 479 49.1
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 2.3e-111 406.8 483 50.7
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 4.0e-111 406.0 454 52.0
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 5.2e-111 405.6 439 54.0
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 1.1e-108 397.9 477 50.1
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 1.4e-108 397.5 488 49.4
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 1.8e-108 397.1 490 48.6
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 5.4e-108 395.6 401 56.1
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 3.5e-107 392.9 490 48.0
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 1.0e-106 391.3 486 49.6
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.9e-106 389.8 488 47.5
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 3.8e-106 389.4 489 48.3
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 3.8e-106 389.4 476 44.5
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 5.0e-106 389.0 479 47.4
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 8.6e-106 388.3 490 47.8
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 1.1e-105 387.9 494 48.8
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 1.1e-105 387.9 481 48.9
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 1.5e-105 387.5 477 45.3
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 9.5e-105 384.8 479 48.2
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 2.1e-104 383.6 480 49.0
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.6e-104 382.9 485 47.6
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 4.7e-104 382.5 477 45.1
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 8.0e-104 381.7 482 47.9
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 1.4e-103 380.9 479 47.2
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 1.8e-103 380.6 490 46.1
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 1.5e-102 377.5 477 47.4
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 2.6e-102 376.7 479 47.4
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 9.8e-102 374.8 480 47.3
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 2.2e-101 373.6 480 46.7
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 2.2e-101 373.6 492 46.7
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 2.8e-101 373.2 484 44.8
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 3.7e-101 372.9 486 47.3
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 2.4e-100 370.2 477 47.2
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 2.0e-99 367.1 399 51.9
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 5.9e-99 365.5 483 43.7
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 1.7e-98 364.0 483 45.3
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.9e-98 362.8 435 50.3
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 1.5e-97 360.9 502 46.4
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.3e-97 358.6 476 45.0
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 9.5e-97 358.2 484 45.5
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 1.6e-96 357.5 476 45.2
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.1e-96 357.1 476 45.2
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 2.1e-96 357.1 493 45.0
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 6.1e-96 355.5 481 45.3
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 1.0e-95 354.8 477 47.2
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.4e-95 354.4 484 45.7
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.0e-95 352.8 484 45.5
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 9.8e-94 348.2 471 46.1
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.4e-92 343.6 492 43.5
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 3.2e-92 343.2 487 45.0
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 2.3e-90 337.0 483 43.1
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 1.1e-89 334.7 329 55.9
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 2.5e-89 333.6 469 44.3
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 4.3e-89 332.8 494 43.7
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 4.3e-89 332.8 475 45.9
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 7.3e-89 332.0 472 44.3
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.2e-88 331.3 488 45.1
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.1e-88 330.5 480 43.8
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 4.7e-88 329.3 336 56.5
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 4.7e-88 329.3 336 56.2
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.8e-87 327.4 481 43.7
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 4.0e-87 326.2 491 42.8
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.0e-86 323.9 474 44.3
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 5.8e-86 322.4 485 42.5
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 1.7e-85 320.9 474 42.4
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 4.9e-85 319.3 504 41.7
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 1.9e-84 317.4 479 44.3
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 2.4e-84 317.0 492 43.1
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 3.2e-84 316.6 482 42.7
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 5.4e-84 315.8 502 41.8
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 7.1e-84 315.5 487 43.5
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 7.1e-84 315.5 487 43.5
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 1.2e-83 314.7 502 40.2
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 7.8e-83 312.0 482 42.7
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.8e-83 312.0 481 44.9
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.0e-82 311.6 487 41.7
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 1.6e-80 304.3 434 44.9
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.7e-80 302.8 479 42.4
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.8e-79 300.8 474 43.2
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.4e-78 296.2 358 48.6
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 2.9e-77 293.5 482 41.3
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.7e-77 293.1 451 45.0
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 4.9e-77 292.7 501 40.3
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 8.3e-77 292.0 300 52.0
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.1e-76 291.6 467 42.2
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 3.2e-76 290.0 504 39.5
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 3.2e-76 290.0 470 40.9
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 7.1e-76 288.9 475 42.1
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.3e-74 284.6 479 40.1
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.3e-74 284.6 479 40.1
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.0e-74 283.5 484 42.1
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.0e-74 283.5 479 40.1
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 5.8e-70 269.2 485 39.4
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.6e-70 268.9 471 42.0
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 2.9e-69 266.9 233 60.1
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.0e-67 259.2 295 48.1
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.0e-66 256.9 359 42.9
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.6e-64 251.1 344 45.3
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.5e-62 244.6 480 37.7
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.4e-61 239.2 472 37.3
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.2e-60 236.9 300 46.0
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 9.3e-60 235.3 291 50.5
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 1.6e-59 234.6 278 49.3
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 8.7e-58 228.8 294 44.9
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 1.5e-57 228.0 492 36.4
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 3.2e-52 210.3 323 44.0
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 4.2e-52 209.9 178 60.7
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 5.1e-50 203.0 185 57.3
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.1e-49 201.8 258 48.4
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 5.6e-49 199.5 472 35.4
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 9.3e-44 182.2 241 47.3
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.8e-37 160.2 194 48.5
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 2.7e-35 154.1 414 31.2
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.0e-34 152.1 170 47.6
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.8e-34 151.4 158 56.3
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 9.7e-33 145.6 200 48.5
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.6e-32 144.8 166 50.0
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.0e-29 135.6 237 38.4
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.9e-29 134.0 164 43.3
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.4e-28 131.7 155 48.4
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 3.2e-28 130.6 149 47.7
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 9.4e-28 129.0 166 41.6
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 7.9e-27 125.9 308 33.8
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.3e-24 118.6 84 66.7
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 4.1e-23 113.6 127 51.2
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 6.5e-21 106.3 288 33.0
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 6.1e-19 99.8 69 68.1
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 3.3e-17 94.0 99 46.5
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 7.0e-15 86.3 76 64.5
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.7e-13 81.6 123 39.0
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 8.5e-13 79.3 59 62.7
ECA232G0019 Erigeron canadensis HOM05D002503 ORTHO05D002810 7.5e-09 66.2 282 27.7
TAR314G0006 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.1e-07 60.8 104 36.5
MELO3C025685.2 Cucumis melo HOM05D002125 ORTHO05D002105 9.1e-07 59.3 213 31.0
EL10Ac7g16789 Beta vulgaris HOM05D002125 ORTHO05D002105 1.2e-06 58.9 405 26.2
CsaV3_6G018970 Cucumis sativus L. HOM05D002125 ORTHO05D002105 2.0e-06 58.2 222 29.3
Nitab4.5_0003794g0040 Nicotiana tabacum HOM05D002813 ORTHO05D003203 7.7e-06 56.2 341 25.5


User provided reference genes

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