Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 9.2e-285 983.0 551 100.0
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 1.1e-181 640.6 564 64.4
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 1.1e-176 624.0 543 63.9
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 1.2e-167 594.0 557 61.9
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 3.1e-163 579.3 609 55.5
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 6.9e-163 578.2 558 60.6
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 1.2e-162 577.4 557 60.3
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 1.4e-160 570.5 561 58.8
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 7.1e-160 568.2 552 59.4
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 2.5e-157 559.7 553 58.8
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 1.3e-156 557.4 562 57.8
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 2.8e-156 556.2 562 58.2
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 2.4e-155 553.1 574 57.5
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 3.1e-155 552.7 567 57.1
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 4.5e-154 548.9 556 57.9
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 9.9e-154 547.7 559 58.3
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 1.3e-153 547.4 559 58.3
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 2.9e-153 546.2 545 63.1
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 4.9e-153 545.4 556 58.8
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 8.4e-153 544.7 559 58.1
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 8.4e-153 544.7 554 56.9
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 5.4e-152 542.0 565 56.3
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 5.4e-152 542.0 554 57.0
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 7.1e-152 541.6 567 58.6
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 3.5e-151 539.3 559 57.2
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.5e-151 539.3 568 57.0
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 3.9e-150 535.8 562 56.9
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 6.7e-150 535.0 569 59.6
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 6.7e-150 535.0 566 56.0
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 4.3e-149 532.3 569 54.0
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 4.3e-149 532.3 549 60.5
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 5.6e-149 531.9 555 55.3
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 5.6e-149 531.9 564 56.7
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 7.4e-149 531.6 603 53.4
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 2.8e-148 529.6 551 56.6
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 3.7e-148 529.3 576 54.9
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 4.8e-148 528.9 553 56.6
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 6.2e-148 528.5 569 53.6
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 1.4e-147 527.3 563 55.1
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 2.4e-147 526.6 581 54.6
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 5.3e-147 525.4 560 56.2
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 9.0e-147 524.6 545 56.5
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 1.2e-146 524.2 550 59.6
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 1.5e-146 523.9 596 53.7
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 5.8e-146 521.9 564 55.5
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 5.8e-146 521.9 573 54.3
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 5.8e-146 521.9 552 59.1
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 1.3e-145 520.8 599 52.8
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 2.9e-145 519.6 574 54.0
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 6.4e-145 518.5 596 53.0
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 1.4e-144 517.3 576 54.2
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 5.5e-144 515.4 562 54.1
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 9.3e-144 514.6 576 54.0
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 3.5e-143 512.7 563 52.2
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 1.8e-142 510.4 542 56.3
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 3.0e-142 509.6 542 57.2
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 1.5e-141 507.3 538 55.9
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 7.4e-141 505.0 556 54.3
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 7.4e-141 505.0 574 53.1
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 7.4e-141 505.0 581 54.7
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 2.1e-140 503.4 562 53.2
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 2.1e-140 503.4 607 52.1
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 3.7e-140 502.7 576 51.4
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 1.8e-139 500.4 573 52.7
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 3.1e-139 499.6 547 56.1
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 1.2e-138 497.7 575 52.7
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 2.6e-138 496.5 535 54.6
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 3.4e-138 496.1 551 53.7
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 7.6e-138 495.0 540 56.7
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 1.0e-137 494.6 540 56.5
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 2.2e-137 493.4 543 55.8
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 2.9e-137 493.0 542 54.2
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 3.8e-137 492.7 539 56.2
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 3.8e-137 492.7 569 52.2
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 6.5e-137 491.9 562 53.9
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 8.4e-137 491.5 545 54.3
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 8.4e-137 491.5 566 52.8
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 2.5e-136 490.0 579 50.8
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 7.1e-136 488.4 540 56.3
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 1.6e-135 487.3 474 58.9
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 1.6e-135 487.3 559 53.3
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 2.1e-135 486.9 561 52.9
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 2.7e-135 486.5 563 52.8
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 7.9e-135 485.0 581 51.8
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 1.8e-134 483.8 571 52.2
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 3.0e-134 483.0 581 51.8
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 1.9e-133 480.3 569 52.2
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 9.7e-133 478.0 531 53.3
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 2.1e-132 476.9 574 51.4
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 2.8e-132 476.5 610 49.5
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 4.8e-132 475.7 515 55.7
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.1e-131 474.6 543 52.7
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 3.1e-131 473.0 545 53.4
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 3.1e-131 473.0 541 52.7
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 4.1e-131 472.6 548 52.0
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 6.9e-131 471.9 489 54.6
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 2.9e-129 466.5 557 51.5
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 3.1e-123 446.4 556 50.2
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 5.9e-122 442.2 556 50.2
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 1.3e-121 441.0 529 52.0
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 7.2e-120 435.3 618 48.2
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 9.1e-115 418.3 460 56.3
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 2.6e-114 416.8 530 50.4
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 3.6e-111 406.4 525 49.1
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 2.3e-110 403.7 523 49.1
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 6.7e-110 402.1 527 49.0
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 1.1e-109 401.4 598 43.3
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 4.8e-108 396.0 587 44.6
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 3.1e-99 366.7 313 62.3
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 1.3e-97 361.3 476 49.4
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 2.5e-88 330.5 521 41.3
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 9.2e-83 312.0 370 51.6
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 7.3e-80 302.4 226 68.1
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 1.0e-73 282.0 350 51.7
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 4.3e-72 276.6 783 31.7
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 1.6e-71 274.6 812 32.0
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 3.2e-67 260.4 230 62.2
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 1.6e-66 258.1 315 51.4
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 9.5e-64 248.8 205 63.9
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 6.2e-63 246.1 315 49.8
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 4.1e-59 233.4 323 46.7
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 7.3e-56 222.6 359 44.0
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 2.4e-54 217.6 361 43.2
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-52 211.8 207 57.0
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 2.4e-46 191.0 265 46.8
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 1.9e-43 181.4 249 51.8
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 7.8e-42 176.0 191 53.4
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 7.6e-37 159.5 411 33.3
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.7e-36 158.3 174 44.3
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 5.8e-29 133.3 142 59.2
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 2.3e-25 121.3 183 47.5
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 2.5e-24 117.9 396 27.8
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 5.6e-24 116.7 223 38.1
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 9.0e-22 109.4 78 71.8
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.3e-17 95.5 125 52.0
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 8.7e-17 92.8 58 72.4
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 8.5e-12 76.3 83 51.8
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 9.7e-08 62.8 53 52.8
PRCOL_00003511 Prasinoderma coloniale HOM05D005511 ORTHO05D006616 2.4e-06 58.2 49 46.9
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 4.1e-06 57.4 53 43.4


User provided reference genes

Program Settings