Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold186G40177 Striga asiatica HOM05D000198 ORTHO05D401703 1.0e-108 396.7 198 100.0
SGA_v2.0_scaffold272G46381 Striga asiatica HOM05D000198 ORTHO05D404840 2.7e-21 106.3 50 98.0
SGA_v2.0_scaffold7G03663 Striga asiatica HOM05D000015 ORTHO05D000984 1.3e-15 87.4 57 70.2
SGA_v2.0_scaffold7G03629 Striga asiatica HOM05D000198 ORTHO05D005702 1.7e-15 87.0 49 79.6
SalBow8G0624 Salvia bowleyana HOM05D000198 ORTHO05D005702 6.1e-13 78.6 49 73.5
SalBow8G1239 Salvia bowleyana HOM05D000198 ORTHO05D005702 6.1e-13 78.6 49 73.5
MSTRG.7092 Avicennia marina HOM05D000198 ORTHO05D005702 1.8e-12 77.0 49 69.4
Cc05_g16560 Coffea canephora HOM05D000198 ORTHO05D005702 1.8e-12 77.0 51 66.7
Dinv42461 Davidia involucrata HOM05D000198 ORTHO05D005702 4.0e-12 75.9 49 69.4
Migut.M01503 Erythranthe guttata HOM05D000198 ORTHO05D005702 5.2e-12 75.5 49 67.3
unitig_26.g10057 Utricularia gibba HOM05D000198 ORTHO05D005702 6.8e-12 75.1 50 64.0
Manes.16G048100 Manihot esculenta HOM05D000198 ORTHO05D005702 1.2e-11 74.3 49 65.3
Rhsim06G0244300 Rhododendron simsii HOM05D000198 ORTHO05D005702 1.2e-11 74.3 49 65.3
Hma1.2p1_0334F.1_g128390 Hydrangea macrophylla HOM05D000198 ORTHO05D005702 1.5e-11 73.9 49 67.3
ECA236G0201 Erigeron canadensis HOM05D000198 ORTHO05D005702 2.6e-11 73.2 49 65.3
Os02g0173900 Oryza sativa ssp. japonica HOM05D000198 ORTHO05D005702 2.6e-11 73.2 49 63.3
Zm00001eb207050 Zea mays HOM05D000198 ORTHO05D005702 2.6e-11 73.2 49 63.3
Lalb_Chr20g0108421 Lupinus albus HOM05D000198 ORTHO05D005702 3.4e-11 72.8 49 63.3
TWI38G0157 Tripterygium wilfordii HOM05D000198 ORTHO05D005702 3.4e-11 72.8 115 41.7
TAR626G1240 Trochodendron aralioides HOM05D000198 ORTHO05D005702 3.4e-11 72.8 49 65.3
Atru.chr1.55 Acer truncatum HOM05D000198 ORTHO05D005702 4.4e-11 72.4 49 63.3
DCAR_032012 Daucus carota HOM05D000198 ORTHO05D005702 5.7e-11 72.0 49 65.3
PSO384G4748 Papaver somniferum HOM05D000198 ORTHO05D005702 5.7e-11 72.0 92 46.7
PSO782G3257 Papaver somniferum HOM05D000198 ORTHO05D005702 7.5e-11 71.6 71 53.5
Aqoxy1G01365 Aquilegia oxysepala HOM05D000198 ORTHO05D005702 9.8e-11 71.2 49 65.3
MELO3C019622.2 Cucumis melo HOM05D000198 ORTHO05D005702 9.8e-11 71.2 49 65.3
PGSC0003DMG400017144 Solanum tuberosum HOM05D000198 ORTHO05D005702 9.8e-11 71.2 83 50.6
Glyma.08G163700 Glycine max HOM05D000198 ORTHO05D005702 1.3e-10 70.9 49 57.1
arahy.Tifrunner.gnm1.ann1.D1NSDN Arachis hypogaea HOM05D000198 ORTHO05D005702 1.7e-10 70.5 49 59.2
GSVIVG01036721001 Vitis vinifera HOM05D000198 ORTHO05D005702 1.7e-10 70.5 49 61.2
arahy.Tifrunner.gnm1.ann1.15VWWC Arachis hypogaea HOM05D000198 ORTHO05D005702 2.2e-10 70.1 49 59.2
DCAR_004554 Daucus carota HOM05D000198 ORTHO05D005702 2.2e-10 70.1 49 61.2
Glyma.15G263500 Glycine max HOM05D000198 ORTHO05D005702 2.2e-10 70.1 49 59.2
Phvul.005G048150 Phaseolus vulgaris HOM05D000198 ORTHO05D005702 2.2e-10 70.1 49 59.2
Prupe.4G128100 Prunus persica HOM05D000198 ORTHO05D005702 2.2e-10 70.1 49 61.2
Solyc09g090700.1 Solanum lycopersicum HOM05D000198 ORTHO05D005702 2.2e-10 70.1 47 66.0
Sopen09g033640 Solanum pennellii HOM05D000198 ORTHO05D005702 2.2e-10 70.1 47 66.0
Lsat_1_v5_gn_7_110980 Lactuca sativa HOM05D000198 ORTHO05D005702 2.8e-10 69.7 49 61.2
Lj3g0005942 Lotus japonicus HOM05D000198 ORTHO05D005702 3.7e-10 69.3 49 61.2
Medtr2g067660 Medicago truncatula HOM05D000198 ORTHO05D005702 3.7e-10 69.3 49 61.2
TPR.G28436 Trifolium pratense HOM05D000198 ORTHO05D005702 3.7e-10 69.3 49 61.2
Cpa.g.sc32.93 Carica papaya HOM05D000198 ORTHO05D005702 4.9e-10 68.9 49 63.3
CiPaw.11G057000 Carya illinoinensis HOM05D000198 ORTHO05D005702 4.9e-10 68.9 55 58.2
CsaV3_6G013440 Cucumis sativus L. HOM05D000198 ORTHO05D005702 4.9e-10 68.9 49 61.2
Eucgr.F04474 Eucalyptus grandis HOM05D000198 ORTHO05D005702 4.9e-10 68.9 96 45.8
Peaxi162Scf00153g00189 Petunia axillaris HOM05D000198 ORTHO05D005702 4.9e-10 68.9 47 63.8
PGR031G3164 Punica granatum HOM05D000198 ORTHO05D005702 4.9e-10 68.9 47 63.8
Zm00001eb233300 Zea mays HOM05D000198 ORTHO05D005702 4.9e-10 68.9 49 61.2
Ca_03179_v3 Cicer arietinum L. HOM05D000198 ORTHO05D005702 6.3e-10 68.6 49 61.2
Ciclev10004713m.g Citrus clementina HOM05D000198 ORTHO05D005702 6.3e-10 68.6 49 61.2
Lalb_Chr25g0284351 Lupinus albus HOM05D000198 ORTHO05D005702 6.3e-10 68.6 49 61.2
EL10Ac2g03290 Beta vulgaris HOM05D000198 ORTHO05D005702 8.3e-10 68.2 47 61.7
Carub.0002s2630 Capsella rubella HOM05D000198 ORTHO05D005702 8.3e-10 68.2 50 56.0
CAN.G524.27 Capsicum annuum HOM05D000198 ORTHO05D005702 8.3e-10 68.2 47 63.8
FvH4_3g14080 Fragaria vesca HOM05D000198 ORTHO05D005702 8.3e-10 68.2 47 61.7
FAN11G1157 Fragaria x ananassa HOM05D000198 ORTHO05D005702 8.3e-10 68.2 47 61.7
FAN16G0643 Fragaria x ananassa HOM05D000198 ORTHO05D005702 8.3e-10 68.2 47 61.7
FAN21G2180 Fragaria x ananassa HOM05D000198 ORTHO05D005702 8.3e-10 68.2 47 61.7
FAN25G1729 Fragaria x ananassa HOM05D000198 ORTHO05D005702 8.3e-10 68.2 47 61.7
HanXRQChr11g0335841 Helianthus annuus HOM05D000198 ORTHO05D005702 8.3e-10 68.2 49 59.2
HanXRQChr11g0335851 Helianthus annuus HOM05D000198 ORTHO05D005702 8.3e-10 68.2 49 59.2
Nn8g40255 Nelumbo nucifera HOM05D000198 ORTHO05D005702 8.3e-10 68.2 91 44.0
Nitab4.5_0000194g0150 Nicotiana tabacum HOM05D000198 ORTHO05D005702 8.3e-10 68.2 47 61.7
Nitab4.5_0013063g0020 Nicotiana tabacum HOM05D000198 ORTHO05D005702 8.3e-10 68.2 47 61.7
Duzib268G0428 Durio zibethinus HOM05D000198 ORTHO05D005702 1.1e-09 67.8 50 58.0
Peaxi162Scf00117g00003 Petunia axillaris HOM05D000198 ORTHO05D005702 1.1e-09 67.8 49 59.2
THA.LOC104808138 Tarenaya hassleriana HOM05D000198 ORTHO05D005702 1.1e-09 67.8 49 57.1
CSS0002476 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D005702 1.4e-09 67.4 49 61.2
CSS0048947 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D005702 1.4e-09 67.4 49 61.2
MD05G1238300 Malus domestica HOM05D000198 ORTHO05D005702 1.4e-09 67.4 49 59.2
Hund12032 Selenicereus undatus HOM05D000198 ORTHO05D005702 1.4e-09 67.4 90 43.3
GSVIVG01036720001 Vitis vinifera HOM05D000198 ORTHO05D005702 1.4e-09 67.4 49 59.2
Sabra10G0133900 Salix brachista HOM05D000198 ORTHO05D005702 1.8e-09 67.0 126 35.7
Sc06g0002010 Simmondsia chinensis HOM05D000198 ORTHO05D005702 1.8e-09 67.0 103 43.7
AL2G40050 Arabidopsis lyrata HOM05D000198 ORTHO05D005702 2.4e-09 66.6 49 57.1
AT1G79440 Arabidopsis thaliana HOM05D000198 ORTHO05D005702 2.4e-09 66.6 49 57.1
HanXRQChr13g0419821 Helianthus annuus HOM05D000198 ORTHO05D005702 2.4e-09 66.6 59 49.2
MD10G1216600 Malus domestica HOM05D000198 ORTHO05D005702 2.4e-09 66.6 49 57.1
Psat1g015240 Pisum sativum HOM05D000198 ORTHO05D005702 2.4e-09 66.6 49 59.2
Sed0009726 Sechium edule HOM05D000198 ORTHO05D005702 3.1e-09 66.2 100 39.0
CDE06G0595 Ceratophyllum demersum HOM05D000198 ORTHO05D005702 4.1e-09 65.9 49 57.1
HanXRQChr07g0190721 Helianthus annuus HOM05D000198 ORTHO05D005702 4.1e-09 65.9 59 49.2
CARHR073100 Cardamine hirsuta HOM05D000198 ORTHO05D005702 5.4e-09 65.5 49 57.1
BcaC08g47505 Brassica carinata HOM05D000198 ORTHO05D005702 7.0e-09 65.1 50 54.0
Sp5g34490 Schrenkiella parvula HOM05D000198 ORTHO05D005702 7.0e-09 65.1 50 54.0
GSVIVG01036719001 Vitis vinifera HOM05D000198 ORTHO05D005702 7.0e-09 65.1 47 59.6
Thecc.07G192200 Theobroma cacao HOM05D000198 ORTHO05D005702 9.2e-09 64.7 49 59.2
Actinidia12753 Actinidia chinensis HOM05D000198 ORTHO05D005702 1.2e-08 64.3 47 59.6
HanXRQChr07g0190661 Helianthus annuus HOM05D000198 ORTHO05D005702 1.6e-08 63.9 49 55.1
RcHm_v2.0_Chr5g0023391 Rosa chinensis HOM05D000198 ORTHO05D005702 1.6e-08 63.9 47 57.4
Cfa019371 Carpinus fangiana HOM05D000198 ORTHO05D005702 2.0e-08 63.5 49 57.1
Haze_07763 Corylus avellana HOM05D000198 ORTHO05D005702 2.0e-08 63.5 49 57.1
CANSAT56G4341 Cannabis sativa HOM05D000198 ORTHO05D005702 3.5e-08 62.8 49 51.0
Potri.010G174000 Populus trichocarpa HOM05D000198 ORTHO05D005702 3.5e-08 62.8 49 57.1
A07p44510 Brassica napus HOM05D000198 ORTHO05D005702 4.5e-08 62.4 49 53.1
C06p53340 Brassica napus HOM05D000198 ORTHO05D005702 4.5e-08 62.4 49 53.1
BraA07t31961Z Brassica rapa HOM05D000198 ORTHO05D005702 4.5e-08 62.4 49 53.1
QL04p094021 Quercus lobata HOM05D000198 ORTHO05D005702 4.5e-08 62.4 49 51.0
Duzib213G0040 Durio zibethinus HOM05D000198 ORTHO05D005702 5.9e-08 62.0 92 35.9
Aa31LG4G1580 Aethionema arabicum HOM05D000198 ORTHO05D005702 1.3e-07 60.8 50 48.0
Thhalv10018394m.g Eutrema salsugineum HOM05D000198 ORTHO05D005702 1.7e-07 60.5 50 54.0
Gohir.A01G100200 Gossypium hirsutum HOM05D000198 ORTHO05D005702 5.0e-07 58.9 49 55.1
Gohir.D01G084900 Gossypium hirsutum HOM05D000198 ORTHO05D005702 5.0e-07 58.9 49 55.1
Gorai.002G110500 Gossypium raimondii HOM05D000198 ORTHO05D005702 5.0e-07 58.9 49 55.1
CANSAT56G2629 Cannabis sativa HOM05D000198 ORTHO05D005702 8.6e-07 58.2 54 42.6
SHI33378 Sapria himalayana HOM05D000198 ORTHO05D005702 1.1e-06 57.8 46 52.2
ATR0697G108 Amborella trichopoda HOM05D000198 ORTHO05D005702 1.9e-06 57.0 49 46.9
SMO364G0446 Selaginella moellendorffii HOM05D000198 ORTHO05D005702 1.9e-06 57.0 51 51.0


User provided reference genes

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