Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 4.4e-198 694.5 373 100.0
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 1.4e-122 443.7 349 74.8
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 2.8e-115 419.5 378 60.8
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 4.6e-102 375.6 351 63.5
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 1.3e-96 357.5 316 63.3
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 6.4e-96 355.1 322 61.5
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 5.4e-95 352.1 323 62.2
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 5.4e-95 352.1 315 65.1
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.2e-94 350.9 298 64.8
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 2.1e-94 350.1 415 55.2
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 4.6e-94 349.0 300 63.0
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 1.3e-93 347.4 325 64.9
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 1.3e-93 347.4 327 59.6
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 1.3e-93 347.4 292 63.7
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 1.7e-93 347.1 317 58.0
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 2.3e-93 346.7 290 64.1
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 3.0e-93 346.3 327 59.9
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 3.0e-93 346.3 328 57.3
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 5.1e-93 345.5 272 64.3
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 1.1e-92 344.4 299 61.5
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.2e-91 340.9 319 61.1
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 1.6e-91 340.5 321 57.0
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 2.1e-91 340.1 362 58.8
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 2.1e-91 340.1 299 61.2
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 2.1e-91 340.1 314 61.1
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 2.8e-91 339.7 327 60.6
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 4.7e-91 339.0 300 57.7
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 6.2e-91 338.6 324 62.3
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.1e-90 337.8 338 59.2
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 2.4e-90 336.7 315 59.7
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 3.1e-90 336.3 321 63.2
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 3.1e-90 336.3 300 62.3
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 4.0e-90 335.9 322 56.8
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 5.2e-90 335.5 322 57.8
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 6.8e-90 335.1 336 59.2
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 1.2e-89 334.3 316 58.9
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 1.5e-89 334.0 321 60.4
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 2.0e-89 333.6 314 59.9
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 4.4e-89 332.4 297 60.9
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 7.6e-89 331.6 326 61.7
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 1.3e-88 330.9 318 60.7
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 2.9e-88 329.7 330 55.8
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 2.4e-87 326.6 328 58.2
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 7.1e-87 325.1 298 58.4
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 9.2e-87 324.7 260 63.1
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 2.7e-86 323.2 324 61.4
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 7.8e-86 321.6 303 58.1
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 1.0e-85 321.2 320 56.2
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 1.3e-85 320.9 307 57.3
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 1.3e-85 320.9 329 55.6
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 3.9e-85 319.3 256 64.1
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 5.1e-85 318.9 294 57.8
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 8.7e-85 318.2 248 65.7
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 1.5e-84 317.4 316 59.8
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 9.6e-84 314.7 319 57.4
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 9.6e-84 314.7 257 64.6
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 4.7e-83 312.4 254 63.4
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 6.2e-83 312.0 333 55.9
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 1.8e-82 310.5 332 54.5
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 4.0e-82 309.3 312 56.4
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 9.0e-82 308.1 306 60.1
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 9.0e-82 308.1 300 57.3
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 2.0e-81 307.0 242 63.6
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 5.8e-81 305.4 383 48.6
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.3e-80 304.3 220 68.2
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 3.8e-80 302.8 293 59.7
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 3.8e-80 302.8 220 67.7
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 4.9e-80 302.4 338 55.0
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 1.2e-78 297.7 339 56.0
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 3.5e-78 296.2 374 49.2
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 4.6e-78 295.8 322 53.1
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 4.6e-78 295.8 275 56.4
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 7.8e-78 295.0 300 60.7
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.3e-77 294.3 301 59.8
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 1.7e-77 293.9 285 58.6
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 1.7e-77 293.9 320 54.7
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 2.3e-77 293.5 284 61.3
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 5.1e-77 292.4 358 50.6
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 1.1e-76 291.2 303 58.7
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 4.3e-76 289.3 300 59.0
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 4.3e-76 289.3 289 57.1
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 9.6e-76 288.1 267 58.8
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 1.3e-75 287.7 300 58.7
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 2.8e-75 286.6 280 55.7
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 8.1e-75 285.0 314 56.1
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 1.8e-74 283.9 313 57.5
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 4.0e-74 282.7 296 60.5
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 2.6e-73 280.0 301 58.1
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 5.8e-73 278.9 301 58.1
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 5.8e-73 278.9 301 58.1
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 5.8e-73 278.9 308 51.6
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 7.6e-73 278.5 249 59.8
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 1.3e-72 277.7 304 57.9
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 2.9e-72 276.6 304 57.6
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 2.9e-72 276.6 304 57.2
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 3.8e-72 276.2 303 56.8
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.8e-72 276.2 303 56.8
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 3.8e-72 276.2 247 62.8
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 4.9e-72 275.8 318 53.5
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.1e-71 274.6 281 58.0
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 3.2e-71 273.1 233 58.8
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.6e-70 270.8 303 56.1
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 1.8e-69 267.3 299 56.9
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 7.4e-68 261.9 193 65.3
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 4.8e-67 259.2 302 55.3
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.2e-65 254.6 283 55.8
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 2.0e-65 253.8 281 56.6
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 1.1e-63 248.1 266 53.0
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 2.7e-62 243.4 182 66.5
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 2.3e-61 240.4 240 61.2
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.0e-61 240.0 270 49.6
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 5.1e-61 239.2 272 54.4
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 1.8e-53 214.2 222 50.9
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 2.8e-51 206.8 135 76.3
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 4.1e-50 203.0 266 42.9
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.9e-47 194.1 266 47.4
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 4.1e-42 176.4 124 71.8
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 1.2e-41 174.9 285 44.6
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 3.4e-41 173.3 124 64.5
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 5.1e-37 159.5 177 48.0
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.3e-35 154.8 252 37.7
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.0e-32 145.2 171 47.4
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.0e-32 145.2 278 36.0
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 7.2e-31 139.0 94 72.3
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 7.2e-31 139.0 96 70.8
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 9.1e-26 122.1 172 50.0
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 5.9e-25 119.4 208 32.2
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 9.4e-23 112.1 210 34.8
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 2.6e-20 104.0 69 73.9
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 4.1e-18 96.7 104 50.0
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 5.3e-18 96.3 150 38.0
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 4.0e-13 80.1 238 30.7
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.5e-12 78.2 184 29.9
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 7.7e-09 65.9 69 55.1
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 2.3e-08 64.3 201 27.9
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 5.5e-07 59.7 96 30.2
MCO12G371 Micromonas commoda HOM05D005493 ORTHO05D049008 9.5e-07 58.9 233 24.5
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 4.7e-06 56.6 65 53.8


User provided reference genes

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