Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 2.8e-258 895.6 785 100.0
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 5.9e-75 286.6 329 58.1
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 3.3e-54 217.6 331 46.2
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 4.4e-54 217.2 326 47.2
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 3.6e-48 197.6 317 46.4
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 8.8e-47 193.0 209 57.9
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.4e-44 184.9 331 43.2
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 5.4e-44 183.7 345 42.3
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 9.1e-44 183.0 345 42.3
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 2.7e-43 181.4 373 40.5
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 3.5e-43 181.0 315 44.1
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 4.5e-43 180.6 315 44.1
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 3.8e-42 177.6 342 42.1
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 5.0e-42 177.2 333 41.7
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 8.6e-42 176.4 246 48.8
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 8.0e-40 169.9 340 41.5
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 2.3e-39 168.3 367 39.2
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 5.2e-39 167.2 397 38.0
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 6.8e-39 166.8 330 42.4
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 2.6e-38 164.9 329 42.2
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 2.6e-38 164.9 449 35.0
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 6.3e-37 160.2 304 43.1
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 8.3e-37 159.8 225 52.4
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 2.4e-36 158.3 231 49.8
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 9.2e-36 156.4 330 40.6
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 9.2e-36 156.4 321 42.4
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 1.2e-35 156.0 197 55.8
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 2.0e-35 155.2 376 36.4
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 2.0e-35 155.2 308 49.0
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 2.7e-35 154.8 340 40.0
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 2.7e-35 154.8 303 38.9
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 6.6e-34 150.2 305 47.5
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 8.6e-34 149.8 290 39.3
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 2.5e-33 148.3 376 36.7
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 7.3e-33 146.7 374 38.0
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 1.2e-32 146.0 292 39.0
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 8.0e-32 143.3 306 38.6
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 1.0e-31 142.9 374 37.4
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 2.3e-31 141.7 393 36.4
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 5.2e-31 140.6 295 42.0
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 5.2e-31 140.6 358 37.7
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 6.8e-31 140.2 351 39.9
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 1.2e-30 139.4 343 35.9
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 1.2e-30 139.4 329 39.2
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 1.5e-30 139.0 333 35.7
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 2.0e-30 138.7 308 36.0
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 2.6e-30 138.3 287 37.6
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 5.8e-30 137.1 340 36.2
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 7.5e-30 136.7 308 35.7
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.3e-29 136.0 295 41.7
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.7e-29 135.6 330 37.3
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 3.7e-29 134.4 303 36.6
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 8.3e-29 133.3 304 36.2
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 8.3e-29 133.3 277 39.4
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 1.1e-28 132.9 293 34.1
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.1e-28 132.9 395 34.9
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 1.4e-28 132.5 394 36.0
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 1.4e-28 132.5 430 32.6
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.9e-28 132.1 302 37.7
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.2e-28 131.3 340 36.8
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 4.1e-28 131.0 275 38.2
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.6e-27 129.0 330 37.9
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 6.0e-27 127.1 296 34.8
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 7.8e-27 126.7 379 35.4
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.7e-26 125.6 264 37.1
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 2.3e-26 125.2 813 31.2
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 3.9e-26 124.4 343 34.4
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 5.0e-26 124.0 379 33.5
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 1.1e-25 122.9 286 45.1
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.9e-25 122.1 307 37.8
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 7.3e-25 120.2 263 36.9
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 1.2e-24 119.4 366 33.9
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 1.2e-24 119.4 275 34.5
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.8e-24 118.2 304 33.9
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 4.7e-24 117.5 328 37.8
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 8.0e-24 116.7 292 35.3
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.1e-23 116.3 267 36.0
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.8e-23 115.5 402 32.6
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 1.8e-23 115.5 385 33.8
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 2.3e-23 115.2 281 35.6
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 4.0e-23 114.4 395 32.2
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 1.3e-21 109.4 372 32.0
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 1.7e-21 109.0 373 35.1
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 2.2e-21 108.6 196 42.3
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 2.9e-21 108.2 300 35.0
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 2.9e-21 108.2 271 33.9
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 4.9e-21 107.5 93 62.4
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 1.4e-20 105.9 286 33.2
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 5.4e-20 104.0 346 32.1
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 5.4e-20 104.0 259 34.4
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 7.0e-20 103.6 170 41.8
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 3.5e-19 101.3 304 32.2
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 7.8e-19 100.1 220 35.0
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.0e-18 99.8 151 48.3
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 1.0e-18 99.8 302 34.4
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 1.0e-18 99.8 333 33.0
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 3.0e-18 98.2 270 35.9
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 5.1e-18 97.4 367 31.1
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 5.1e-18 97.4 319 32.6
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 5.1e-18 97.4 319 32.6
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 2.5e-17 95.1 302 32.1
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 3.3e-17 94.7 301 32.2
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 9.5e-17 93.2 309 31.1
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 9.5e-17 93.2 264 42.0
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 2.1e-16 92.0 294 31.6
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 1.1e-15 89.7 235 34.9
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 1.8e-15 89.0 209 35.9
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 2.3e-15 88.6 304 32.2
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.1e-15 88.2 308 31.5
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 4.0e-15 87.8 273 40.7
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 5.2e-15 87.4 357 31.4
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 5.2e-15 87.4 273 32.2
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 5.2e-15 87.4 119 53.8
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 1.5e-14 85.9 117 47.9
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 2.0e-14 85.5 301 38.9
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 2.0e-14 85.5 354 28.5
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.6e-14 85.1 157 42.0
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 3.4e-14 84.7 360 28.6
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 3.4e-14 84.7 939 23.6
Oeu030768.1 Olea europaea HOM05D003806 ORTHO05D004346 4.4e-14 84.3 130 46.9
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 5.8e-14 84.0 304 28.6
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 9.9e-14 83.2 265 31.7
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 9.9e-14 83.2 270 32.2
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.3e-13 82.8 246 35.4
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 1.7e-13 82.4 265 31.3
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.7e-13 82.4 274 30.7
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 1.4e-12 79.3 146 39.7
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.9e-12 79.0 258 30.2
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.9e-12 79.0 260 33.1
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 2.4e-12 78.6 324 30.9
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 7.1e-12 77.0 223 30.9
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 1.2e-11 76.3 292 28.4
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 1.6e-11 75.9 355 28.7
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 4.6e-11 74.3 349 28.1
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 1.3e-10 72.8 314 32.8
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.7e-10 72.4 289 29.8
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 5.1e-10 70.9 89 53.9
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 6.6e-10 70.5 345 27.2
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 1.9e-09 68.9 123 41.5
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.9e-09 68.9 374 28.3
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 2.5e-09 68.6 325 27.7
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 3.3e-09 68.2 229 30.6
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 9.5e-09 66.6 403 29.0
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.6e-08 65.9 241 30.3
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.8e-08 65.1 151 33.8
Zm00001eb430870 Zea mays HOM05D003806 ORTHO05D004346 2.4e-07 62.0 89 40.4
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 8.9e-07 60.1 315 27.3
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 2.6e-06 58.5 89 39.3
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 5.8e-06 57.4 256 27.7
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 5.8e-06 57.4 256 27.7
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 5.8e-06 57.4 292 27.7
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 9.9e-06 56.6 381 27.0
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 9.9e-06 56.6 418 28.0


User provided reference genes

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