Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 0.0e+00 1113.2 576 100.0
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 2.8e-236 822.0 574 76.1
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 1.3e-188 663.7 578 62.6
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 1.7e-188 663.3 587 61.7
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 1.2e-146 524.2 565 52.0
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 6.3e-135 485.3 582 48.5
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 2.2e-127 460.3 587 47.4
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 2.4e-126 456.8 610 46.4
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 3.1e-126 456.4 575 47.3
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 3.1e-126 456.4 601 45.9
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 1.3e-124 451.1 595 46.1
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.6e-122 444.1 614 45.1
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 8.0e-122 441.8 583 45.5
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 6.8e-121 438.7 580 47.8
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.2e-120 438.0 579 47.7
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 9.8e-120 434.9 550 46.7
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 1.3e-119 434.5 573 45.4
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 2.8e-119 433.3 578 45.0
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 2.4e-118 430.3 574 46.0
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 3.2e-118 429.9 577 43.7
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 4.1e-118 429.5 570 44.0
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 1.2e-117 427.9 582 45.2
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.6e-117 427.6 570 44.2
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 3.5e-117 426.4 576 44.8
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 1.3e-116 424.5 567 45.0
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.7e-116 424.1 577 44.7
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 3.9e-116 422.9 570 43.3
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 6.6e-116 422.2 574 45.3
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 1.1e-115 421.4 574 46.7
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 2.5e-115 420.2 570 43.2
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 3.3e-115 419.9 568 45.6
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 5.6e-115 419.1 550 47.5
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 5.6e-115 419.1 579 45.4
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 7.3e-115 418.7 577 45.2
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 7.3e-115 418.7 575 45.2
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 1.6e-114 417.5 572 46.0
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 1.6e-114 417.5 575 45.6
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 1.8e-113 414.1 593 44.7
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.3e-113 413.7 577 45.1
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 2.3e-113 413.7 548 46.5
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 4.0e-113 412.9 571 45.4
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 6.8e-113 412.1 582 45.9
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 6.8e-113 412.1 567 45.1
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 8.9e-113 411.8 606 43.2
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 2.0e-112 410.6 570 43.0
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 4.4e-112 409.5 554 45.1
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 4.4e-112 409.5 610 42.5
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 5.8e-112 409.1 569 43.9
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.9e-111 406.0 559 47.2
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 6.4e-111 405.6 577 45.6
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 6.4e-111 405.6 575 45.2
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 1.4e-110 404.4 564 45.2
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 3.2e-110 403.3 545 46.6
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 3.2e-110 403.3 589 44.7
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.0e-109 400.6 570 42.5
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.7e-109 400.2 581 43.0
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.8e-109 398.7 571 45.2
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 2.3e-108 397.1 558 42.3
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 2.3e-108 397.1 566 44.5
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 3.9e-108 396.4 542 43.9
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 6.6e-108 395.6 565 43.2
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 1.5e-107 394.4 579 45.3
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 1.9e-107 394.0 579 42.7
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.3e-107 393.3 556 46.0
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 7.3e-107 392.1 559 45.4
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.3e-107 392.1 550 46.0
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 9.5e-107 391.7 550 46.0
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 2.8e-106 390.2 576 44.4
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 2.8e-106 390.2 578 43.3
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 4.7e-106 389.4 581 45.3
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 4.7e-106 389.4 549 43.9
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 6.2e-106 389.0 559 44.9
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 1.1e-105 388.3 563 43.7
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 5.2e-105 386.0 618 41.3
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 6.8e-105 385.6 560 44.5
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 8.9e-105 385.2 559 44.4
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 8.9e-105 385.2 559 42.8
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 2.0e-104 384.0 559 43.5
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 7.5e-104 382.1 579 43.7
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 9.8e-104 381.7 563 43.5
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.9e-102 377.5 584 43.2
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 1.9e-102 377.5 549 42.3
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 2.4e-102 377.1 577 40.4
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 9.2e-102 375.2 558 41.9
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 9.2e-102 375.2 573 42.6
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 2.7e-101 373.6 558 41.6
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 7.8e-101 372.1 271 66.1
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 6.6e-100 369.0 582 41.2
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 5.6e-99 365.9 600 40.2
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.5e-96 357.8 549 41.7
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 1.1e-94 351.7 581 40.1
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 5.4e-94 349.4 579 41.3
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 1.0e-92 345.1 585 39.5
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 2.3e-92 344.0 502 43.2
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 3.9e-92 343.2 452 43.8
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 8.6e-92 342.0 558 40.0
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 1.6e-90 337.8 578 40.0
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 8.1e-90 335.5 498 42.8
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 4.4e-88 329.7 587 39.5
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 8.4e-87 325.5 542 40.8
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 4.2e-86 323.2 318 53.8
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 2.1e-85 320.9 592 36.7
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 4.8e-82 309.7 601 38.8
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 9.0e-81 305.4 330 50.0
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 3.2e-78 297.0 577 36.9
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 4.2e-78 296.6 549 38.6
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 9.3e-78 295.4 545 38.3
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 1.6e-77 294.7 488 37.3
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.1e-77 294.3 652 34.2
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 6.0e-77 292.7 561 37.4
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 2.3e-76 290.8 733 32.9
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 5.6e-75 286.2 585 37.3
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 4.5e-72 276.6 563 34.8
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 7.6e-72 275.8 499 38.1
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 6.7e-68 262.7 546 35.7
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 1.2e-64 251.9 644 30.7
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.5e-62 244.2 580 32.9
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 8.7e-60 235.7 471 37.4
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 2.4e-57 227.6 553 32.0
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 3.9e-52 210.3 214 51.9
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 6.7e-52 209.5 503 34.0
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 5.7e-51 206.5 524 30.3
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 5.3e-49 199.9 443 35.9
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 3.4e-48 197.2 651 28.3
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 2.2e-47 194.5 669 27.4
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 7.4e-43 179.5 147 56.5
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 7.4e-43 179.5 476 28.2
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 1.2e-32 145.6 229 34.9
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 3.8e-31 140.6 203 38.4
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 1.1e-30 139.0 181 48.6
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 4.2e-30 137.1 166 44.6
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 1.1e-27 129.0 127 59.8
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.3e-26 125.6 573 25.0
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.1e-25 122.5 494 24.1
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 1.4e-25 122.1 135 49.6
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 1.8e-25 121.7 163 51.5
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 5.5e-22 110.2 320 28.4
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 1.7e-18 98.6 131 46.6
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 4.8e-18 97.1 80 63.8
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 1.8e-17 95.1 85 57.6
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.8e-17 95.1 85 57.6
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 1.8e-17 95.1 164 33.5
Cfa026542 Carpinus fangiana HOM05D005537 ORTHO05D124841 1.1e-06 59.3 116 36.2


User provided reference genes

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