Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1905.6 983 100.0
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 1469.1 998 77.8
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 1440.6 1018 75.0
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1377.5 1000 74.0
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 1346.3 999 71.4
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 1343.2 997 71.5
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 1343.2 997 71.7
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 1327.8 1000 70.2
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1313.5 1000 69.4
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 1310.8 1000 69.5
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 1297.7 968 70.5
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 1281.5 1002 68.4
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 1280.0 982 69.7
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 1280.0 1001 67.8
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 1275.4 1000 67.9
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 1275.0 1003 67.6
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 1271.5 1004 67.2
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 1270.8 1035 66.0
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 1270.4 1001 66.1
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 1266.1 1001 68.5
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 1262.7 997 68.4
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 1256.9 999 68.2
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1256.1 1000 67.3
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 1256.1 1002 67.7
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 1253.8 1006 66.8
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 1251.9 1003 66.1
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 1251.5 1001 66.1
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 1251.1 990 67.3
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 1250.0 995 67.4
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 1249.6 985 67.7
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 1249.2 979 67.6
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 1249.2 1006 66.7
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 1248.4 986 67.7
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1247.6 997 66.5
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 1246.9 1003 66.3
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1245.7 997 66.4
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 1244.6 1000 66.2
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 1242.6 1003 66.7
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 1242.3 1000 67.1
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 1239.9 993 66.6
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 1237.6 998 67.4
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1237.6 998 67.3
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 1235.7 1000 65.8
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 1235.3 1033 65.2
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 1234.6 986 66.9
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 1234.2 1000 66.0
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1233.4 998 67.9
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 1233.4 1011 65.5
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 1233.4 1000 66.1
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 1230.3 999 66.9
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 1229.2 1006 67.0
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 1225.3 986 66.4
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 1223.8 980 67.3
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1223.4 998 67.1
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 1223.0 998 66.1
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 1222.6 996 65.6
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 1222.6 996 65.6
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 1221.8 984 66.2
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1221.8 1000 66.1
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 1218.4 1004 64.7
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 1216.8 999 65.6
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 1216.1 999 65.8
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1215.3 980 66.9
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 1214.9 1004 64.9
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1214.1 1006 65.0
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 1212.2 997 65.1
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1211.8 1004 64.9
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 1208.0 918 70.0
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 1207.2 999 65.0
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 1206.8 992 65.6
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 1206.0 977 66.7
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 1198.7 994 64.4
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 1193.3 1006 64.2
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 1193.3 985 65.6
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 1192.6 978 66.7
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 1192.2 980 64.4
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 1187.6 990 64.3
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1182.2 986 65.7
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 1180.2 998 64.3
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 1175.6 988 64.6
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 1172.5 979 64.4
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 1170.6 980 66.3
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 1162.1 1008 63.3
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 1161.7 983 64.5
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 1159.1 990 63.2
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 1158.3 1007 62.9
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 1157.5 982 63.7
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 1151.0 982 63.4
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1148.3 872 71.7
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1147.9 998 63.0
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 1147.5 975 63.4
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 1144.0 984 64.6
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1134.0 966 63.6
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1132.5 966 63.6
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1127.1 1046 60.0
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1118.2 974 62.5
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1118.2 974 62.5
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 1.7e-305 1052.7 995 58.8
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.9e-304 1049.3 1030 57.5
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 3.0e-302 1042.0 985 57.1
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 5.6e-301 1037.7 993 57.0
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 7.4e-301 1037.3 1000 58.8
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 6.6e-241 838.2 859 55.8
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 2.8e-231 806.2 509 81.1
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 2.9e-220 769.6 935 50.3
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 2.6e-213 746.5 1048 44.1
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 9.6e-208 728.0 741 57.6
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 6.0e-202 708.8 976 45.5
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 8.7e-201 704.9 471 79.2
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 3.2e-195 686.4 678 58.1
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 1.4e-187 661.0 1020 42.4
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 3.0e-185 653.3 1019 42.6
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 5.1e-185 652.5 1020 40.6
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 2.0e-181 640.6 551 62.4
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.9e-176 624.0 533 61.0
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 3.8e-164 583.2 602 54.3
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 9.1e-158 562.0 532 62.6
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 1.3e-156 558.1 383 76.8
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 9.4e-155 552.0 453 63.6
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 2.8e-151 540.4 507 57.2
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 3.0e-145 520.4 509 55.6
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 8.8e-145 518.8 337 80.1
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 1.8e-134 484.6 317 73.5
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 8.5e-132 475.7 385 67.0
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 4.7e-130 469.9 337 66.8
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 2.4e-126 457.6 436 56.0
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 6.6e-108 396.4 311 62.7
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 3.4e-104 384.0 266 79.7
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 3.9e-100 370.5 268 67.2
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 6.8e-97 359.8 293 66.2
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 1.5e-83 315.5 328 50.0
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 1.5e-72 278.9 320 54.4
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 3.2e-70 271.2 300 56.7
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 6.7e-68 263.5 304 55.6
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 1.6e-13 82.8 69 60.9
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 2.1e-13 82.4 69 60.9
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 8.8e-12 77.0 36 88.9
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.2e-11 76.6 34 94.1
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.2e-11 76.6 34 94.1
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.2e-11 76.6 69 55.1
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 1.2e-11 76.6 34 94.1
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.6e-11 75.5 69 55.1
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 4.5e-08 64.7 168 33.3
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 5.9e-08 64.3 37 83.8


User provided reference genes

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