Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07513 Striga asiatica HOM05D000068 ORTHO05D020743 2.0e-95 352.4 183 100.0
Hma1.2p1_2582F.1_g324790 Hydrangea macrophylla HOM05D000068 ORTHO05D003956 2.3e-22 109.8 178 46.6
SGA_v2.0_scaffold108G31011 Striga asiatica HOM05D000068 ORTHO05D003956 6.9e-19 98.2 286 33.9
Oeu059707.1 Olea europaea HOM05D000068 ORTHO05D003956 1.0e-17 94.4 169 43.2
GSVIVG01016617001 Vitis vinifera HOM05D000068 ORTHO05D003956 1.9e-16 90.1 270 33.7
MSTRG.8234 Avicennia marina HOM05D000068 ORTHO05D003956 7.1e-16 88.2 289 32.2
SalBow6G0152 Salvia bowleyana HOM05D000068 ORTHO05D003956 2.7e-15 86.3 294 31.6
Psat6g236760 Pisum sativum HOM05D000068 ORTHO05D003956 7.9e-15 84.7 288 32.6
Ca_11297_v3 Cicer arietinum L. HOM05D000068 ORTHO05D003956 3.0e-14 82.8 290 31.0
COL.COLO4_14920 Corchorus olitorius HOM05D000068 ORTHO05D003956 3.0e-14 82.8 290 31.0
Dinv25971 Davidia involucrata HOM05D000068 ORTHO05D003956 3.0e-14 82.8 288 32.3
Cc02_g08390 Coffea canephora HOM05D000068 ORTHO05D003956 3.9e-14 82.4 289 31.1
Sabra10G0162400 Salix brachista HOM05D000068 ORTHO05D003956 3.9e-14 82.4 290 31.4
Dinv31417 Davidia involucrata HOM05D000068 ORTHO05D003956 5.1e-14 82.0 292 31.2
Migut.F01521 Erythranthe guttata HOM05D000068 ORTHO05D003956 5.1e-14 82.0 282 31.2
Nn2g10493 Nelumbo nucifera HOM05D000068 ORTHO05D003956 6.7e-14 81.6 291 31.3
Carub.0005s2196 Capsella rubella HOM05D000068 ORTHO05D003956 8.7e-14 81.3 75 61.3
TAR623G1155 Trochodendron aralioides HOM05D000068 ORTHO05D003956 1.5e-13 80.5 290 31.7
MSTRG.309 Avicennia marina HOM05D000068 ORTHO05D003956 1.9e-13 80.1 290 30.3
Nn2g12881 Nelumbo nucifera HOM05D000068 ORTHO05D003956 1.9e-13 80.1 49 83.7
Aa31LG10G10310 Aethionema arabicum HOM05D000068 ORTHO05D003956 2.5e-13 79.7 270 31.9
BcaC02g09744 Brassica carinata HOM05D000068 ORTHO05D003956 2.5e-13 79.7 98 49.0
C04p37140 Brassica napus HOM05D000068 ORTHO05D003956 2.5e-13 79.7 80 57.5
A04p04620 Brassica napus HOM05D000068 ORTHO05D003956 4.3e-13 79.0 80 58.8
BraA04t16172Z Brassica rapa HOM05D000068 ORTHO05D003956 4.3e-13 79.0 80 58.8
MD01G1121400 Malus domestica HOM05D000068 ORTHO05D003956 4.3e-13 79.0 321 29.3
Manes.07G111300 Manihot esculenta HOM05D000068 ORTHO05D003956 4.3e-13 79.0 289 31.8
Lj5g0000141 Lotus japonicus HOM05D000068 ORTHO05D003956 5.7e-13 78.6 290 30.7
Medtr1g115430 Medicago truncatula HOM05D000068 ORTHO05D003956 5.7e-13 78.6 280 31.1
TPR.G14001 Trifolium pratense HOM05D000068 ORTHO05D003956 5.7e-13 78.6 290 30.3
AL5G36440 Arabidopsis lyrata HOM05D000068 ORTHO05D003956 7.4e-13 78.2 79 55.7
CARHR134350 Cardamine hirsuta HOM05D000068 ORTHO05D003956 7.4e-13 78.2 106 46.2
Haze_17013 Corylus avellana HOM05D000068 ORTHO05D003956 7.4e-13 78.2 289 31.1
FAN06G0375 Fragaria x ananassa HOM05D000068 ORTHO05D003956 7.4e-13 78.2 278 30.9
Potri.010G210100 Populus trichocarpa HOM05D000068 ORTHO05D003956 7.4e-13 78.2 289 31.1
BolC4t25276H Brassica oleracea HOM05D000068 ORTHO05D003956 9.7e-13 77.8 100 44.0
Cfa001528 Carpinus fangiana HOM05D000068 ORTHO05D003956 9.7e-13 77.8 291 30.9
Glyma.20G239800 Glycine max HOM05D000068 ORTHO05D003956 9.7e-13 77.8 290 31.4
Aqoxy4G03027 Aquilegia oxysepala HOM05D000068 ORTHO05D003956 1.3e-12 77.4 288 30.9
BcaB02g08430 Brassica carinata HOM05D000068 ORTHO05D003956 1.3e-12 77.4 99 49.5
BcaB02g09115 Brassica carinata HOM05D000068 ORTHO05D003956 1.3e-12 77.4 272 31.2
Peaxi162Scf00060g00438 Petunia axillaris HOM05D000068 ORTHO05D003956 1.3e-12 77.4 289 29.1
arahy.Tifrunner.gnm1.ann1.ZP6UQG Arachis hypogaea HOM05D000068 ORTHO05D003956 1.6e-12 77.0 286 30.4
Potri.008G050400 Populus trichocarpa HOM05D000068 ORTHO05D003956 1.6e-12 77.0 287 31.0
Sp5g07160 Schrenkiella parvula HOM05D000068 ORTHO05D003956 1.6e-12 77.0 300 29.0
CSS0015971 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D003956 2.2e-12 76.6 278 30.9
QL08p058678 Quercus lobata HOM05D000068 ORTHO05D003956 2.2e-12 76.6 289 30.4
arahy.Tifrunner.gnm1.ann1.JDZ0RF Arachis hypogaea HOM05D000068 ORTHO05D003956 2.8e-12 76.3 72 61.1
C03p26240 Brassica napus HOM05D000068 ORTHO05D003956 2.8e-12 76.3 164 38.4
BolC3t15008H Brassica oleracea HOM05D000068 ORTHO05D003956 2.8e-12 76.3 164 38.4
ClCG09G020190 Citrullus lanatus HOM05D000068 ORTHO05D003956 2.8e-12 76.3 291 30.2
Thhalv10010064m.g Eutrema salsugineum HOM05D000068 ORTHO05D003956 2.8e-12 76.3 110 46.4
Glyma.10G290800 Glycine max HOM05D000068 ORTHO05D003956 2.8e-12 76.3 290 31.0
Lj8A89T28 Lonicera japonica HOM05D000068 ORTHO05D003956 2.8e-12 76.3 279 30.8
TWI63G0814 Tripterygium wilfordii HOM05D000068 ORTHO05D003956 2.8e-12 76.3 289 30.1
VMungo0720G1917 Vigna mungo HOM05D000068 ORTHO05D003956 3.7e-12 75.9 263 31.2
CDE02G1090 Ceratophyllum demersum HOM05D000068 ORTHO05D003956 4.8e-12 75.5 65 61.5
Ciclev10030519m.g Citrus clementina HOM05D000068 ORTHO05D003956 4.8e-12 75.5 291 30.2
Hma1.2p1_0402F.1_g144950 Hydrangea macrophylla HOM05D000068 ORTHO05D003956 4.8e-12 75.5 264 31.1
Manes.10G034900 Manihot esculenta HOM05D000068 ORTHO05D003956 4.8e-12 75.5 289 30.4
Phvul.007G010600 Phaseolus vulgaris HOM05D000068 ORTHO05D003956 4.8e-12 75.5 264 30.7
CiPaw.02G180800 Carya illinoinensis HOM05D000068 ORTHO05D003956 6.3e-12 75.1 279 29.7
Thecc.10G052400 Theobroma cacao HOM05D000068 ORTHO05D003956 6.3e-12 75.1 290 29.7
CARHR165300 Cardamine hirsuta HOM05D000068 ORTHO05D003956 8.2e-12 74.7 292 29.8
Duzib114G0068 Durio zibethinus HOM05D000068 ORTHO05D003956 8.2e-12 74.7 290 29.7
Rhsim03G0127200 Rhododendron simsii HOM05D000068 ORTHO05D003956 8.2e-12 74.7 293 30.0
Sopen04g005490 Solanum pennellii HOM05D000068 ORTHO05D003956 8.2e-12 74.7 290 29.0
Atru.chr12.544 Acer truncatum HOM05D000068 ORTHO05D003956 1.1e-11 74.3 290 30.3
Medtr7g023340 Medicago truncatula HOM05D000068 ORTHO05D003956 1.1e-11 74.3 290 29.7
PSO339G0013 Papaver somniferum HOM05D000068 ORTHO05D003956 1.1e-11 74.3 76 55.3
Actinidia34347 Actinidia chinensis HOM05D000068 ORTHO05D003956 1.4e-11 73.9 289 30.4
CDE09G1026 Ceratophyllum demersum HOM05D000068 ORTHO05D003956 1.4e-11 73.9 65 66.2
CsaV3_5G026260 Cucumis sativus L. HOM05D000068 ORTHO05D003956 1.4e-11 73.9 281 29.5
Eucgr.J00052 Eucalyptus grandis HOM05D000068 ORTHO05D003956 1.4e-11 73.9 288 29.2
FAN10G0082 Fragaria x ananassa HOM05D000068 ORTHO05D003956 1.4e-11 73.9 263 30.0
PSO384G2617 Papaver somniferum HOM05D000068 ORTHO05D003956 1.4e-11 73.9 76 55.3
Sabra08G0035800 Salix brachista HOM05D000068 ORTHO05D003956 1.4e-11 73.9 290 30.3
HPP92_001487 Vanilla planifolia HOM05D000068 ORTHO05D003956 1.4e-11 73.9 90 51.1
AT3G55320 Arabidopsis thaliana HOM05D000068 ORTHO05D003956 1.8e-11 73.6 49 71.4
FvH4_7g21390 Fragaria vesca HOM05D000068 ORTHO05D003956 1.8e-11 73.6 264 29.9
Prupe.2G229100 Prunus persica HOM05D000068 ORTHO05D003956 2.4e-11 73.2 290 29.3
MELO3C025468.2 Cucumis melo HOM05D000068 ORTHO05D003956 3.1e-11 72.8 283 29.3
FAN01G0364 Fragaria x ananassa HOM05D000068 ORTHO05D003956 3.1e-11 72.8 264 29.9
RcHm_v2.0_Chr1g0365761 Rosa chinensis HOM05D000068 ORTHO05D003956 3.1e-11 72.8 264 29.9
EL10Ac2g03452 Beta vulgaris HOM05D000068 ORTHO05D003956 4.1e-11 72.4 264 30.3
A03p22160 Brassica napus HOM05D000068 ORTHO05D003956 4.1e-11 72.4 164 37.2
BraA03t11447Z Brassica rapa HOM05D000068 ORTHO05D003956 4.1e-11 72.4 164 37.2
CAN.G1557.13 Capsicum annuum HOM05D000068 ORTHO05D003956 4.1e-11 72.4 76 55.3
Psat3g184480 Pisum sativum HOM05D000068 ORTHO05D003956 4.1e-11 72.4 290 30.0
AT2G39480 Arabidopsis thaliana HOM05D000068 ORTHO05D003956 5.3e-11 72.0 293 29.4
arahy.Tifrunner.gnm1.ann1.EA8TAW Arachis hypogaea HOM05D000068 ORTHO05D003956 5.3e-11 72.0 314 28.7
arahy.Tifrunner.gnm1.ann1.VZ1HH7 Arachis hypogaea HOM05D000068 ORTHO05D003956 5.3e-11 72.0 314 28.7
CiPaw.01G282400 Carya illinoinensis HOM05D000068 ORTHO05D003956 5.3e-11 72.0 278 30.6
Dinv34339 Davidia involucrata HOM05D000068 ORTHO05D003956 5.3e-11 72.0 288 29.9
FAN06G2447 Fragaria x ananassa HOM05D000068 ORTHO05D003956 5.3e-11 72.0 264 29.5
Glyma.18G286600 Glycine max HOM05D000068 ORTHO05D003956 5.3e-11 72.0 280 30.0
Gohir.D04G061700 Gossypium hirsutum HOM05D000068 ORTHO05D003956 5.3e-11 72.0 290 29.3
Gorai.012G069000 Gossypium raimondii HOM05D000068 ORTHO05D003956 5.3e-11 72.0 290 29.3
Carub.0004s2155 Capsella rubella HOM05D000068 ORTHO05D003956 6.9e-11 71.6 293 29.4
Lalb_Chr02g0144021 Lupinus albus HOM05D000068 ORTHO05D003956 6.9e-11 71.6 290 29.3
Os03g0280000 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D003956 6.9e-11 71.6 65 58.5
THA.LOC104810015 Tarenaya hassleriana HOM05D000068 ORTHO05D003956 6.9e-11 71.6 277 30.0
CSS0038972 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D003956 9.0e-11 71.2 288 30.6
AUR62022519 Chenopodium quinoa HOM05D000068 ORTHO05D003956 9.0e-11 71.2 264 29.9
Glyma.02G094800 Glycine max HOM05D000068 ORTHO05D003956 9.0e-11 71.2 279 29.7
Gohir.A05G350900 Gossypium hirsutum HOM05D000068 ORTHO05D003956 9.0e-11 71.2 290 29.3
Lalb_Chr17g0336251 Lupinus albus HOM05D000068 ORTHO05D003956 9.0e-11 71.2 280 29.3
HPP92_021166 Vanilla planifolia HOM05D000068 ORTHO05D003956 9.0e-11 71.2 290 30.0
Ca_07205_v3 Cicer arietinum L. HOM05D000068 ORTHO05D003956 1.2e-10 70.9 280 29.6
DCAR_015215 Daucus carota HOM05D000068 ORTHO05D003956 1.2e-10 70.9 288 28.5
Gohir.A10G213400 Gossypium hirsutum HOM05D000068 ORTHO05D003956 1.2e-10 70.9 92 48.9
PGR044G0060 Punica granatum HOM05D000068 ORTHO05D003956 1.2e-10 70.9 290 28.3
Sed0007890 Sechium edule HOM05D000068 ORTHO05D003956 1.2e-10 70.9 281 29.5
AUR62035951 Chenopodium quinoa HOM05D000068 ORTHO05D003956 1.5e-10 70.5 263 29.7
Dinv26274 Davidia involucrata HOM05D000068 ORTHO05D003956 1.5e-10 70.5 288 29.5
Phvul.008G015000 Phaseolus vulgaris HOM05D000068 ORTHO05D003956 1.5e-10 70.5 264 29.9
Sp4g21780 Schrenkiella parvula HOM05D000068 ORTHO05D003956 1.5e-10 70.5 303 28.7
A05p06900 Brassica napus HOM05D000068 ORTHO05D003956 2.0e-10 70.1 289 29.4
C04p08170 Brassica napus HOM05D000068 ORTHO05D003956 2.0e-10 70.1 289 29.4
BolC4t22427H Brassica oleracea HOM05D000068 ORTHO05D003956 2.0e-10 70.1 289 29.4
BraA05t19655Z Brassica rapa HOM05D000068 ORTHO05D003956 2.0e-10 70.1 289 29.4
Lalb_Chr04g0257921 Lupinus albus HOM05D000068 ORTHO05D003956 2.0e-10 70.1 290 29.7
MD07G1191100 Malus domestica HOM05D000068 ORTHO05D003956 2.0e-10 70.1 290 29.3
AL4G36870 Arabidopsis lyrata HOM05D000068 ORTHO05D003956 2.6e-10 69.7 293 28.7
CANSAT56G1302 Cannabis sativa HOM05D000068 ORTHO05D003956 2.6e-10 69.7 287 29.3
DCAR_027678 Daucus carota HOM05D000068 ORTHO05D003956 2.6e-10 69.7 286 28.7
ECA233G0466 Erigeron canadensis HOM05D000068 ORTHO05D003956 2.6e-10 69.7 63 60.3
Aa31LG5G20120 Aethionema arabicum HOM05D000068 ORTHO05D003956 4.5e-10 68.9 262 29.4
MBI05_g08788_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D003956 4.5e-10 68.9 288 28.8
Solyc04g010310.4 Solanum lycopersicum HOM05D000068 ORTHO05D003956 4.5e-10 68.9 264 29.2
Zm00001eb397430 Zea mays HOM05D000068 ORTHO05D003956 4.5e-10 68.9 49 67.3
Thhalv10016145m.g Eutrema salsugineum HOM05D000068 ORTHO05D003956 5.9e-10 68.6 293 29.0
Hund20005 Selenicereus undatus HOM05D000068 ORTHO05D003956 5.9e-10 68.6 264 29.5
unitig_747.g21788 Utricularia gibba HOM05D000068 ORTHO05D003956 5.9e-10 68.6 69 55.1
Hund12553 Selenicereus undatus HOM05D000068 ORTHO05D003956 7.7e-10 68.2 264 29.2
vmacro07147 Vaccinium macrocarpon HOM05D000068 ORTHO05D003956 7.7e-10 68.2 288 29.9
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 7.7e-10 68.2 51 74.5
Ah.10g033200 Amaranthus hybridus HOM05D000068 ORTHO05D003956 1.0e-09 67.8 263 29.7
HanXRQChr07g0200971 Helianthus annuus HOM05D000068 ORTHO05D003956 1.0e-09 67.8 54 63.0
HanXRQChr08g0220221 Helianthus annuus HOM05D000068 ORTHO05D003956 1.0e-09 67.8 262 30.2
PGR142G2178 Punica granatum HOM05D000068 ORTHO05D003956 1.0e-09 67.8 290 30.0
Sed0003459 Sechium edule HOM05D000068 ORTHO05D003956 1.0e-09 67.8 281 28.8
Eucgr.G02905 Eucalyptus grandis HOM05D000068 ORTHO05D003956 1.3e-09 67.4 76 52.6
Lsat_1_v5_gn_2_115960 Lactuca sativa HOM05D000068 ORTHO05D003956 1.3e-09 67.4 266 29.7
Sc20g0002500 Simmondsia chinensis HOM05D000068 ORTHO05D003956 1.3e-09 67.4 282 29.8
Zm00001eb012760 Zea mays HOM05D000068 ORTHO05D003956 1.3e-09 67.4 67 58.2
HanXRQChr14g0457711 Helianthus annuus HOM05D000068 ORTHO05D003956 1.7e-09 67.0 266 28.9
ECA238G1581 Erigeron canadensis HOM05D000068 ORTHO05D003956 2.9e-09 66.2 265 29.1
Lsat_1_v5_gn_8_16161 Lactuca sativa HOM05D000068 ORTHO05D003956 2.9e-09 66.2 91 49.5
SHI22527 Sapria himalayana HOM05D000068 ORTHO05D003956 3.8e-09 65.9 50 68.0
TWI15G0634 Tripterygium wilfordii HOM05D000068 ORTHO05D003956 3.8e-09 65.9 279 29.0
ATR0033G039 Amborella trichopoda HOM05D000068 ORTHO05D003956 5.0e-09 65.5 276 28.6
Gohir.D10G222500 Gossypium hirsutum HOM05D000068 ORTHO05D003956 5.0e-09 65.5 287 28.2
Gorai.011G252900 Gossypium raimondii HOM05D000068 ORTHO05D003956 5.0e-09 65.5 287 28.2
Zm00001eb139690 Zea mays HOM05D000068 ORTHO05D003956 5.0e-09 65.5 285 28.4
Actinidia34348 Actinidia chinensis HOM05D000068 ORTHO05D003956 6.5e-09 65.1 288 28.5
TPR.G15484 Trifolium pratense HOM05D000068 ORTHO05D003956 6.5e-09 65.1 264 28.8
Nitab4.5_0002655g0040 Nicotiana tabacum HOM05D000068 ORTHO05D003956 7.2e-08 61.6 67 59.7
Eucgr.G02906 Eucalyptus grandis HOM05D000068 ORTHO05D003956 1.2e-07 60.8 53 58.5
SEGI_33379 Sequoiadendron giganteum HOM05D000068 ORTHO05D003956 1.2e-07 60.8 88 44.3
Lj2A1052G39 Lonicera japonica HOM05D000068 ORTHO05D003956 1.6e-07 60.5 67 61.2
GSVIVG01025040001 Vitis vinifera HOM05D000068 ORTHO05D003956 1.6e-07 60.5 291 29.9
Lj1g0011982 Lotus japonicus HOM05D000068 ORTHO05D003956 2.1e-07 60.1 67 59.7
PSO206G0002 Papaver somniferum HOM05D000068 ORTHO05D003956 3.6e-07 59.3 67 56.7
TAR369G0472 Trochodendron aralioides HOM05D000068 ORTHO05D003956 7.9e-07 58.2 67 59.7
PSO339G6153 Papaver somniferum HOM05D000068 ORTHO05D003956 1.4e-06 57.4 67 55.2
Actinidia34335 Actinidia chinensis HOM05D000068 ORTHO05D003956 1.8e-06 57.0 67 58.2
Psat2g151280 Pisum sativum HOM05D000068 ORTHO05D020743 1.8e-06 57.0 63 60.3
Aqoxy2G01999 Aquilegia oxysepala HOM05D000068 ORTHO05D003956 3.9e-06 55.8 67 55.2
unitig_747.g21787 Utricularia gibba HOM05D000068 ORTHO05D003956 3.9e-06 55.8 67 53.7
DCAR_006006 Daucus carota HOM05D000068 ORTHO05D003956 8.8e-06 54.7 67 55.2


User provided reference genes

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