Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07505 Striga asiatica HOM05D005094 ORTHO05D006271 9.7e-164 580.1 296 100.0
Oeu058195.3 Olea europaea HOM05D005094 ORTHO05D006271 1.2e-89 334.0 335 61.2
MSTRG.12396 Avicennia marina HOM05D005094 ORTHO05D006271 1.0e-88 330.9 310 64.2
HanXRQChr13g0420191 Helianthus annuus HOM05D005094 ORTHO05D006271 1.1e-87 327.4 292 65.8
Oeu048825.1 Olea europaea HOM05D005094 ORTHO05D006271 2.5e-87 326.2 304 64.1
CSS0045075 Camellia sinensis var. sinensis HOM05D005094 ORTHO05D006271 2.1e-86 323.2 291 65.3
CAN.G689.3 Capsicum annuum HOM05D005094 ORTHO05D006271 1.8e-85 320.1 307 63.5
unitig_8.g3656 Utricularia gibba HOM05D005094 ORTHO05D006271 1.8e-85 320.1 304 63.2
Migut.N02437 Erythranthe guttata HOM05D005094 ORTHO05D006271 5.3e-85 318.5 310 63.2
PGSC0003DMG400002984 Solanum tuberosum HOM05D005094 ORTHO05D006271 5.3e-85 318.5 308 63.0
Actinidia07282 Actinidia chinensis HOM05D005094 ORTHO05D006271 2.9e-83 312.8 292 64.7
SalBow3G2633 Salvia bowleyana HOM05D005094 ORTHO05D006271 2.9e-83 312.8 284 66.2
Lj2A957G10 Lonicera japonica HOM05D005094 ORTHO05D006271 6.4e-83 311.6 304 61.5
Solyc11g071930.2 Solanum lycopersicum HOM05D005094 ORTHO05D006271 4.6e-81 305.4 308 61.0
Sopen11g029600 Solanum pennellii HOM05D005094 ORTHO05D006271 4.6e-81 305.4 308 61.0
SGA_v2.0_scaffold268G46196 Striga asiatica HOM05D005094 ORTHO05D006271 6.0e-81 305.1 337 58.2
Nitab4.5_0010585g0010 Nicotiana tabacum HOM05D005094 ORTHO05D006271 7.9e-81 304.7 288 63.5
Solyc06g073950.3 Solanum lycopersicum HOM05D005094 ORTHO05D006271 1.3e-80 303.9 289 63.7
Sopen06g030350 Solanum pennellii HOM05D005094 ORTHO05D006271 1.3e-80 303.9 289 63.7
Peaxi162Scf00429g00211 Petunia axillaris HOM05D005094 ORTHO05D006271 2.3e-80 303.1 290 62.8
DCAR_014060 Daucus carota HOM05D005094 ORTHO05D006271 1.1e-79 300.8 304 59.9
Nitab4.5_0007630g0010 Nicotiana tabacum HOM05D005094 ORTHO05D006271 1.5e-79 300.4 308 60.4
ECA240G4521 Erigeron canadensis HOM05D005094 ORTHO05D006271 3.3e-79 299.3 304 59.5
HanXRQChr03g0091071 Helianthus annuus HOM05D005094 ORTHO05D006271 5.6e-79 298.5 292 62.0
PGR119G0969 Punica granatum HOM05D005094 ORTHO05D006271 7.4e-79 298.1 292 62.7
PGSC0003DMG400005935 Solanum tuberosum HOM05D005094 ORTHO05D006271 2.8e-78 296.2 289 61.6
Rhsim01G0200800 Rhododendron simsii HOM05D005094 ORTHO05D006271 3.1e-77 292.7 304 60.5
arahy.Tifrunner.gnm1.ann1.S09H8L Arachis hypogaea HOM05D005094 ORTHO05D006271 4.0e-77 292.4 304 58.6
Ciclev10029128m.g Citrus clementina HOM05D005094 ORTHO05D006271 5.3e-77 292.0 304 60.5
VMungo1080G0255 Vigna mungo HOM05D005094 ORTHO05D006271 2.0e-76 290.0 304 58.6
Aqoxy1G00640 Aquilegia oxysepala HOM05D005094 ORTHO05D006271 2.6e-76 289.7 289 60.6
arahy.Tifrunner.gnm1.ann1.5LCH1K Arachis hypogaea HOM05D005094 ORTHO05D006271 4.5e-76 288.9 291 59.1
Glyma.12G189400 Glycine max HOM05D005094 ORTHO05D006271 4.5e-76 288.9 299 58.2
Potri.001G215800 Populus trichocarpa HOM05D005094 ORTHO05D006271 4.5e-76 288.9 304 58.9
Sed0013610 Sechium edule HOM05D005094 ORTHO05D006271 4.5e-76 288.9 304 59.2
AUR62020223 Chenopodium quinoa HOM05D005094 ORTHO05D006271 7.6e-76 288.1 291 59.8
Ca_01630_v3 Cicer arietinum L. HOM05D005094 ORTHO05D006271 9.9e-76 287.7 304 58.2
Manes.04G062000 Manihot esculenta HOM05D005094 ORTHO05D006271 9.9e-76 287.7 290 61.0
CsaV3_1G043920 Cucumis sativus L. HOM05D005094 ORTHO05D006271 1.7e-75 287.0 304 58.2
Lsat_1_v5_gn_3_114781 Lactuca sativa HOM05D005094 ORTHO05D006271 1.7e-75 287.0 288 59.7
Glyma.13G312400 Glycine max HOM05D005094 ORTHO05D006271 2.2e-75 286.6 299 58.2
Gohir.A05G077850 Gossypium hirsutum HOM05D005094 ORTHO05D006271 3.8e-75 285.8 295 60.3
TAR636G3194 Trochodendron aralioides HOM05D005094 ORTHO05D006271 3.8e-75 285.8 290 60.0
QL01p019499 Quercus lobata HOM05D005094 ORTHO05D006271 4.9e-75 285.4 294 59.2
Duzib170G0543 Durio zibethinus HOM05D005094 ORTHO05D006271 1.1e-74 284.3 290 61.0
CDE06G0118 Ceratophyllum demersum HOM05D005094 ORTHO05D006271 1.4e-74 283.9 290 60.7
Gohir.D05G080650 Gossypium hirsutum HOM05D005094 ORTHO05D006271 2.4e-74 283.1 295 60.0
Zm00001eb011420 Zea mays HOM05D005094 ORTHO05D006271 4.2e-74 282.3 290 59.7
ATR0665G096 Amborella trichopoda HOM05D005094 ORTHO05D006271 7.1e-74 281.6 233 68.7
Lj3g0019788 Lotus japonicus HOM05D005094 ORTHO05D006271 7.1e-74 281.6 298 57.0
Os03g0261500 Oryza sativa ssp. japonica HOM05D005094 ORTHO05D006271 9.3e-74 281.2 290 59.3
HPP92_002190 Vanilla planifolia HOM05D005094 ORTHO05D006271 1.6e-73 280.4 290 59.3
Potri.009G016700 Populus trichocarpa HOM05D005094 ORTHO05D006271 2.1e-73 280.0 299 58.2
Carub.0006s1972 Capsella rubella HOM05D005094 ORTHO05D006271 4.6e-73 278.9 293 59.0
Eucgr.J00577 Eucalyptus grandis HOM05D005094 ORTHO05D006271 3.9e-72 275.8 290 60.7
TWI79G0842 Tripterygium wilfordii HOM05D005094 ORTHO05D006271 2.5e-71 273.1 304 57.2
CAN.G1463.12 Capsicum annuum HOM05D005094 ORTHO05D006271 3.3e-71 272.7 289 58.8
COL.COLO4_25411 Corchorus olitorius HOM05D005094 ORTHO05D006271 3.3e-71 272.7 336 52.4
EL10Ac7g16288 Beta vulgaris HOM05D005094 ORTHO05D006271 5.6e-71 271.9 294 58.2
Sabra16G0127800 Salix brachista HOM05D005094 ORTHO05D006271 5.6e-71 271.9 341 51.9
CANSAT54G2440 Cannabis sativa HOM05D005094 ORTHO05D006271 9.6e-71 271.2 292 57.2
ClCG03G012000 Citrullus lanatus HOM05D005094 ORTHO05D006271 1.3e-70 270.8 289 57.4
arahy.Tifrunner.gnm1.ann1.23FIWR Arachis hypogaea HOM05D005094 ORTHO05D006271 3.7e-70 269.2 304 56.2
Nn2g14337 Nelumbo nucifera HOM05D005094 ORTHO05D006271 4.8e-70 268.9 238 66.4
Aa31LG1G13330 Aethionema arabicum HOM05D005094 ORTHO05D006271 1.4e-69 267.3 304 56.6
Dinv18848 Davidia involucrata HOM05D005094 ORTHO05D006271 1.8e-69 266.9 293 57.0
Sp6g23110 Schrenkiella parvula HOM05D005094 ORTHO05D006271 1.8e-69 266.9 293 57.3
Hund18798 Selenicereus undatus HOM05D005094 ORTHO05D006271 9.0e-69 264.6 290 58.6
Thecc.09G271300 Theobroma cacao HOM05D005094 ORTHO05D006271 2.0e-68 263.5 295 57.6
BcaC04g19539 Brassica carinata HOM05D005094 ORTHO05D006271 1.0e-67 261.2 293 57.0
THA.LOC104810936 Tarenaya hassleriana HOM05D005094 ORTHO05D006271 1.7e-67 260.4 291 56.7
Atru.chr3.3099 Acer truncatum HOM05D005094 ORTHO05D006271 2.2e-67 260.0 290 56.6
MELO3C015043.2 Cucumis melo HOM05D005094 ORTHO05D006271 4.6e-65 252.3 304 54.6
AT5G22080 Arabidopsis thaliana HOM05D005094 ORTHO05D006271 6.0e-65 251.9 293 54.9
A10p18680 Brassica napus HOM05D005094 ORTHO05D006271 3.9e-64 249.2 293 55.3
C09p54620 Brassica napus HOM05D005094 ORTHO05D006271 3.9e-64 249.2 293 55.3
BolC9t58328H Brassica oleracea HOM05D005094 ORTHO05D006271 3.9e-64 249.2 293 55.3
BraA10t43948Z Brassica rapa HOM05D005094 ORTHO05D006271 6.7e-64 248.4 302 53.6
Lalb_Chr24g0393351 Lupinus albus HOM05D005094 ORTHO05D006271 3.3e-63 246.1 292 53.4
FvH4_5g27361 Fragaria vesca HOM05D005094 ORTHO05D006271 4.3e-63 245.7 291 53.6
SHI25260 Sapria himalayana HOM05D005094 ORTHO05D006271 4.3e-63 245.7 298 53.0
Nn6g34655 Nelumbo nucifera HOM05D005094 ORTHO05D006271 7.4e-63 245.0 238 62.2
Medtr2g087520 Medicago truncatula HOM05D005094 ORTHO05D006271 1.3e-62 244.2 299 52.2
CARHR191450 Cardamine hirsuta HOM05D005094 ORTHO05D006271 2.1e-62 243.4 293 53.6
Pp3c14_160 Physcomitrium patens HOM05D005094 ORTHO05D006271 2.8e-62 243.0 293 50.2
Pp3c14_168 Physcomitrium patens HOM05D005094 ORTHO05D006271 2.8e-62 243.0 293 50.2
Mapoly0009s0161 Marchantia polymorpha HOM05D005094 ORTHO05D006271 4.8e-62 242.3 292 52.4
AagrBONN_evm.TU.Sc2ySwM_362.382 Anthoceros agrestis HOM05D005094 ORTHO05D006271 6.3e-62 241.9 293 51.2
Cc01_g07820 Coffea canephora HOM05D005094 ORTHO05D006271 1.4e-61 240.7 289 54.0
FAN04G2258 Fragaria x ananassa HOM05D005925 ORTHO05D007270 4.1e-61 239.2 294 52.0
Phvul.005G118800 Phaseolus vulgaris HOM05D005094 ORTHO05D006271 6.9e-61 238.4 291 53.3
Psat5g261040 Pisum sativum HOM05D005094 ORTHO05D006271 9.0e-61 238.0 291 53.3
SMO361G0106 Selaginella moellendorffii HOM05D005094 ORTHO05D006271 2.6e-60 236.5 293 51.5
unitig_22.g5683 Utricularia gibba HOM05D005094 ORTHO05D006271 1.1e-58 231.1 304 51.3
TAR633G0299 Trochodendron aralioides HOM05D005094 ORTHO05D006271 1.4e-58 230.7 291 52.6
BraA02t05635Z Brassica rapa HOM05D004977 ORTHO05D006454 3.2e-58 229.6 355 46.2
AUR62001557 Chenopodium quinoa HOM05D005094 ORTHO05D006271 2.1e-57 226.9 275 52.7
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.7e-57 226.5 291 51.2
AL6G33050 Arabidopsis lyrata HOM05D005094 ORTHO05D006271 4.6e-57 225.7 293 50.9
Duzib168G1065 Durio zibethinus HOM05D005094 ORTHO05D006271 6.1e-57 225.3 280 53.2
arahy.Tifrunner.gnm1.ann1.1B470G Arachis hypogaea HOM05D005094 ORTHO05D006271 7.9e-57 224.9 304 50.7
CBR_g39052 Chara braunii HOM05D005094 ORTHO05D006271 2.3e-56 223.4 286 48.6
Gorai.009G082400 Gossypium raimondii HOM05D005094 ORTHO05D006271 9.1e-53 211.5 288 51.4
Sc21g0006770 Simmondsia chinensis HOM05D005094 ORTHO05D006271 1.2e-52 211.1 267 53.2
FAN08G3356 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.3e-51 207.6 294 48.0
TPR.G4181 Trifolium pratense HOM05D005094 ORTHO05D006271 1.4e-50 204.1 184 64.1
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 4.2e-50 202.6 291 47.4
MD11G1174000 Malus domestica HOM05D005094 ORTHO05D006271 2.7e-49 199.9 291 48.5
RcHm_v2.0_Chr7g0218521 Rosa chinensis HOM05D005094 ORTHO05D006271 3.6e-49 199.5 291 47.8
Hma1.2p1_0101F.1_g049550 Hydrangea macrophylla HOM05D005094 ORTHO05D006271 4.6e-49 199.1 291 48.5
Prupe.6G145600 Prunus persica HOM05D005094 ORTHO05D006271 2.3e-48 196.8 291 48.1
vmacro14319 Vaccinium macrocarpon HOM05D005094 ORTHO05D006271 1.1e-47 194.5 143 79.0
MBI06_g20956_MAGBIO Magnolia biondii HOM05D005094 ORTHO05D006271 1.5e-47 194.1 290 47.9
GSVIVG01037590001 Vitis vinifera HOM05D005094 ORTHO05D006271 1.5e-47 194.1 292 47.6
BcaB08g36455 Brassica carinata HOM05D005094 ORTHO05D006271 4.1e-45 186.0 293 45.7
CiPaw.14G093900 Carya illinoinensis HOM05D005094 ORTHO05D006271 5.3e-45 185.7 292 45.9
PSO384G0916 Papaver somniferum HOM05D005094 ORTHO05D006271 5.3e-45 185.7 295 45.1
PSO339G5010 Papaver somniferum HOM05D005094 ORTHO05D006271 9.1e-45 184.9 295 44.7
BNapus_Darmor_BZH_scaffold_38p00890 Brassica napus HOM05D005094 ORTHO05D006271 5.9e-44 182.2 293 45.4
BolC2t07135H Brassica oleracea HOM05D005094 ORTHO05D006271 5.9e-44 182.2 293 45.4
Thhalv10014509m.g Eutrema salsugineum HOM05D005094 ORTHO05D006271 5.9e-44 182.2 290 46.2
Nitab4.5_0005360g0010 Nicotiana tabacum HOM05D005094 ORTHO05D006271 2.2e-43 180.3 175 61.1
Oeu058196.1 Olea europaea HOM05D005094 ORTHO05D006271 2.5e-42 176.8 172 61.6
Haze_23570 Corylus avellana HOM05D005094 ORTHO05D006271 3.6e-41 172.9 354 40.4
BcaC01g06605 Brassica carinata HOM05D005094 ORTHO05D006271 5.2e-40 169.1 123 76.4
Cpa.g.sc103.15 Carica papaya HOM05D005094 ORTHO05D006271 2.0e-39 167.2 220 50.5
Cre12.g557950 Chlamydomonas reinhardtii HOM05D005094 ORTHO05D006271 6.7e-32 142.1 290 35.2
SEGI_32448 Sequoiadendron giganteum HOM05D005094 ORTHO05D006271 3.3e-31 139.8 130 63.8
CDE08G1429 Ceratophyllum demersum HOM05D005094 ORTHO05D006271 4.1e-29 132.9 82 86.6
BcaB05g22752 Brassica carinata HOM05D005094 ORTHO05D006271 5.3e-29 132.5 184 50.5
A03p10590 Brassica napus HOM05D001105 ORTHO05D003643 5.9e-28 129.0 110 69.1
BraA03t10371Z Brassica rapa HOM05D001105 ORTHO05D003643 5.9e-28 129.0 110 69.1
Duzib150G0850 Durio zibethinus HOM05D005094 ORTHO05D006271 7.7e-28 128.6 141 60.3
BolC8t51866H Brassica oleracea HOM05D004977 ORTHO05D006454 1.9e-26 124.0 150 55.3
MSTRG.17673 Avicennia marina HOM05D005094 ORTHO05D006271 4.2e-26 122.9 118 61.9
C08p43100 Brassica napus HOM05D004977 ORTHO05D006454 5.5e-26 122.5 150 54.7
vmacro14320 Vaccinium macrocarpon HOM05D005094 ORTHO05D006271 3.7e-22 109.8 146 50.0
C03p12180 Brassica napus HOM05D001105 ORTHO05D003643 1.6e-20 104.4 105 62.9
BcaC03g13856 Brassica carinata HOM05D005094 ORTHO05D006271 3.8e-19 99.8 252 36.9
FAN08G2987 Fragaria x ananassa HOM05D005094 ORTHO05D006271 4.0e-16 89.7 66 71.2
BcaC07g41303 Brassica carinata HOM05D004977 ORTHO05D006454 1.2e-15 88.2 74 70.3
MD03G1156400 Malus domestica HOM05D005094 ORTHO05D006271 2.6e-15 87.0 55 80.0
Migut.F00838 Erythranthe guttata HOM05D005094 ORTHO05D006271 7.5e-15 85.5 109 50.5
CDE08G0906 Ceratophyllum demersum HOM05D005094 ORTHO05D006271 3.1e-13 80.1 81 56.8
MELO3C000325.2 Cucumis melo HOM05D005094 ORTHO05D006271 7.0e-13 79.0 76 59.2
MCO03G485 Micromonas commoda HOM05D005094 ORTHO05D006271 2.7e-12 77.0 269 29.4
BcaB01g04743 Brassica carinata HOM05D005094 ORTHO05D006271 3.5e-12 76.6 157 37.6
Nitab4.5_0005360g0020 Nicotiana tabacum HOM05D005094 ORTHO05D006271 8.6e-11 72.0 86 47.7
PRCOL_00005229 Prasinoderma coloniale HOM05D005094 ORTHO05D006271 7.3e-10 68.9 256 28.1
MD03G1156300 Malus domestica HOM05D005094 ORTHO05D006271 1.2e-09 68.2 39 82.1
SEGI_09358 Sequoiadendron giganteum HOM05D005094 ORTHO05D006271 6.8e-08 62.4 92 41.3
SGA_v2.0_scaffold16G07506 Striga asiatica HOM05D005094 ORTHO05D401324 1.5e-07 61.2 40 80.0
MD03G1156500 Malus domestica HOM05D005094 ORTHO05D006271 2.6e-07 60.5 80 46.2
FvH4_5g27290 Fragaria vesca HOM05D042164 ORTHO05D046305 3.4e-07 60.1 90 47.8


User provided reference genes

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