Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 3.0e-309 1064.3 528 100.0
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 2.5e-271 938.3 527 87.3
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.3e-267 926.0 527 87.3
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 8.3e-267 923.3 525 86.5
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 1.2e-262 909.4 509 86.8
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.6e-262 909.1 528 84.3
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 3.6e-262 907.9 531 83.8
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.8e-261 905.6 529 86.6
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 5.2e-261 904.0 536 83.4
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 1.5e-260 902.5 509 86.1
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 2.0e-260 902.1 529 83.9
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 5.8e-260 900.6 510 85.9
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 7.5e-260 900.2 510 86.1
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 7.5e-260 900.2 510 85.9
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 9.9e-260 899.8 536 82.6
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 2.2e-259 898.7 531 83.4
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 2.9e-259 898.3 530 83.2
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 3.7e-259 897.9 510 85.7
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 3.7e-259 897.9 537 83.1
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 4.9e-259 897.5 535 83.6
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 8.3e-259 896.7 510 85.1
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 8.3e-259 896.7 510 85.5
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 1.9e-258 895.6 543 81.2
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 1.9e-258 895.6 510 85.5
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 2.4e-258 895.2 527 83.3
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 9.2e-258 893.3 529 82.8
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.2e-257 892.9 510 84.5
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 2.1e-257 892.1 510 84.9
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 2.1e-257 892.1 510 84.9
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 1.3e-256 889.4 510 85.3
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 1.7e-256 889.0 567 79.7
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 1.7e-256 889.0 537 80.8
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.7e-256 889.0 529 82.6
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.7e-256 889.0 529 82.6
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 1.7e-256 889.0 529 82.8
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 2.3e-256 888.6 532 82.5
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 3.9e-256 887.9 526 81.9
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 6.6e-256 887.1 532 82.5
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 8.6e-256 886.7 529 81.3
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 8.6e-256 886.7 532 82.5
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.1e-255 886.3 532 82.5
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 1.1e-255 886.3 510 84.7
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.5e-255 885.9 532 82.3
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.9e-255 885.6 527 81.8
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.9e-255 885.6 537 81.4
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 4.3e-255 884.4 528 82.0
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 4.3e-255 884.4 534 80.5
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 7.3e-255 883.6 528 82.2
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.2e-254 882.9 532 82.5
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 1.2e-254 882.9 528 82.0
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.6e-254 882.5 532 82.1
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 4.7e-254 880.9 510 84.3
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.7e-254 880.9 534 81.3
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 4.7e-254 880.9 531 81.4
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 6.2e-254 880.6 510 83.1
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.1e-253 879.8 534 81.5
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 1.4e-253 879.4 536 81.0
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.4e-253 878.6 533 80.3
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 2.4e-253 878.6 530 81.1
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 2.4e-253 878.6 518 83.0
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 4.0e-253 877.9 566 78.3
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 6.8e-253 877.1 527 82.2
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 6.8e-253 877.1 510 83.7
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 8.9e-253 876.7 510 83.3
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 1.5e-252 875.9 535 80.7
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 2.0e-252 875.5 536 80.4
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 5.8e-252 874.0 530 80.8
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 9.9e-252 873.2 526 81.7
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 9.9e-252 873.2 528 80.9
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 9.9e-252 873.2 538 81.0
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 1.3e-251 872.8 517 82.0
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.7e-251 872.5 511 82.8
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 1.7e-251 872.5 510 83.1
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.2e-251 872.1 534 81.1
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 2.9e-251 871.7 527 81.0
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 3.8e-251 871.3 534 81.3
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 4.9e-251 870.9 528 81.2
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 1.9e-250 869.0 524 81.5
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 4.1e-250 867.8 524 81.5
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 4.1e-250 867.8 524 81.5
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 5.4e-250 867.5 509 82.1
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 9.2e-250 866.7 524 81.3
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 9.2e-250 866.7 524 81.3
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 9.2e-250 866.7 530 79.8
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.6e-249 865.9 534 80.3
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 2.1e-249 865.5 533 79.0
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 3.5e-249 864.8 509 82.7
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 6.0e-249 864.0 524 81.1
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 6.0e-249 864.0 557 76.8
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 6.0e-249 864.0 530 80.4
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 7.8e-249 863.6 526 80.8
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 1.0e-248 863.2 530 79.2
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 3.9e-248 861.3 540 78.7
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 8.7e-248 860.1 534 79.4
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 2.5e-247 858.6 509 80.6
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 3.3e-247 858.2 511 81.6
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 9.6e-247 856.7 533 78.0
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 9.6e-247 856.7 510 82.7
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 1.1e-245 853.2 507 81.1
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 4.0e-245 851.3 510 81.0
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.2e-244 849.7 496 82.1
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 4.4e-244 847.8 528 80.1
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.4e-243 844.0 510 80.4
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 2.4e-242 842.0 524 77.7
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 6.0e-241 837.4 518 79.5
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 6.0e-241 837.4 518 79.5
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 3.4e-236 821.6 539 73.7
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 2.4e-229 798.9 539 72.0
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 1.2e-225 786.6 532 71.6
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 2.7e-225 785.4 532 72.4
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 3.3e-223 778.5 549 70.7
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.2e-219 765.8 517 70.2
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 5.5e-218 761.1 484 79.3
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.0e-216 756.9 514 70.6
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 8.7e-216 753.8 507 70.4
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 9.7e-215 750.4 524 68.9
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.1e-213 746.9 511 69.3
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 3.8e-211 738.4 523 67.3
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 3.7e-206 721.8 509 69.0
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.1e-202 710.3 423 81.8
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.6e-201 706.4 527 71.0
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 3.0e-200 702.2 527 70.8
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 9.7e-199 697.2 408 85.0
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 1.2e-196 690.3 502 64.9
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 3.7e-190 668.7 533 66.0
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 7.7e-188 661.0 390 84.6
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 5.7e-183 644.8 553 58.4
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 3.8e-179 632.1 510 62.5
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 1.2e-172 610.5 355 86.2
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 2.3e-171 606.3 357 85.4
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 2.3e-171 606.3 430 73.3
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 2.5e-162 576.2 525 58.5
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 3.7e-150 535.8 495 53.3
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.1e-146 524.2 356 74.2
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 3.1e-144 516.2 289 85.1
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 1.5e-143 513.8 288 84.7
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 4.9e-134 482.3 286 85.0
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.4e-133 480.7 521 49.5
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.3e-130 469.5 367 67.8
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 1.9e-122 443.7 521 46.6
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 1.0e-115 421.4 286 75.5
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 8.8e-91 338.6 190 82.1
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 5.2e-75 286.2 420 36.0
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 1.1e-61 241.9 325 43.7
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 1.2e-60 238.4 362 41.2
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.5e-45 187.6 120 75.8
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 2.8e-36 157.5 104 76.0
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 4.6e-31 140.2 79 84.8
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.1e-28 131.3 93 68.8
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 1.4e-24 118.6 68 76.5
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 3.6e-20 104.0 82 70.7
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 2.4e-16 91.3 53 77.4
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 3.6e-12 77.4 103 47.6
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 5.3e-11 73.6 48 66.7
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 7.1e-08 63.2 35 80.0


User provided reference genes

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