Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 2.5e-104 382.1 189 100.0
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 1.8e-102 375.9 188 97.3
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 8.2e-100 367.1 189 93.7
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 4.1e-99 364.8 189 93.7
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 9.1e-99 363.6 189 92.1
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 7.7e-98 360.5 189 92.6
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 9.7e-93 343.6 189 88.4
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 2.7e-87 325.5 189 85.2
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 3.6e-87 325.1 189 86.2
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 5.2e-86 321.2 189 85.2
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.2e-85 320.1 189 84.7
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.2e-85 320.1 189 84.7
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.2e-85 320.1 189 84.1
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 1.5e-85 319.7 189 83.6
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 2.0e-85 319.3 189 84.7
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 2.0e-85 319.3 189 83.6
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 2.0e-85 319.3 189 83.6
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 2.0e-85 319.3 189 84.7
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 2.6e-85 318.9 189 83.1
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 7.5e-85 317.4 189 82.5
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 9.8e-85 317.0 189 82.5
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.3e-84 316.6 189 83.6
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 1.8e-83 312.8 189 81.0
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 2.4e-83 312.4 189 81.0
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 5.4e-83 311.2 189 81.5
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 9.1e-83 310.5 189 80.4
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.2e-82 310.1 189 81.5
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 1.6e-82 309.7 189 81.5
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 3.5e-82 308.5 189 80.4
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 4.5e-82 308.1 189 81.5
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 4.5e-82 308.1 189 81.5
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 4.5e-82 308.1 189 81.5
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 5.9e-82 307.8 189 81.5
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 5.9e-82 307.8 189 81.5
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 5.9e-82 307.8 189 81.5
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 7.7e-82 307.4 189 81.5
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 7.7e-82 307.4 189 81.0
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 7.7e-82 307.4 189 80.4
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.3e-81 306.6 189 79.4
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.3e-81 306.6 189 80.4
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 1.7e-81 306.2 189 81.0
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 2.3e-81 305.8 189 78.8
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 2.9e-81 305.4 189 81.0
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 2.9e-81 305.4 189 81.0
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 2.9e-81 305.4 189 81.0
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 3.8e-81 305.1 189 81.0
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 5.0e-81 304.7 189 81.0
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 6.6e-81 304.3 189 81.0
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 6.6e-81 304.3 189 81.0
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 8.6e-81 303.9 189 79.9
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 1.5e-80 303.1 181 82.9
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.5e-80 303.1 189 81.0
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.5e-80 303.1 189 81.0
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.5e-80 303.1 189 81.0
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 1.9e-80 302.8 189 79.9
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 1.9e-80 302.8 189 80.4
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 2.5e-80 302.4 189 80.4
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 2.5e-80 302.4 189 80.4
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 4.2e-80 301.6 189 79.9
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 4.2e-80 301.6 189 79.9
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 5.5e-80 301.2 189 79.4
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 5.5e-80 301.2 189 79.4
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 7.2e-80 300.8 189 78.8
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 1.2e-79 300.1 189 78.3
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 1.2e-79 300.1 189 77.8
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 1.6e-79 299.7 189 78.8
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 2.1e-79 299.3 191 80.1
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 2.1e-79 299.3 191 80.1
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 2.1e-79 299.3 189 77.2
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 2.8e-79 298.9 189 77.8
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 3.6e-79 298.5 189 79.4
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 4.7e-79 298.1 189 77.2
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 4.7e-79 298.1 189 77.2
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 4.7e-79 298.1 189 78.3
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 4.7e-79 298.1 189 76.2
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 4.7e-79 298.1 189 76.2
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 4.7e-79 298.1 189 77.8
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 4.7e-79 298.1 189 76.7
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 6.1e-79 297.7 189 79.4
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 6.1e-79 297.7 189 79.4
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 6.1e-79 297.7 189 79.4
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 6.1e-79 297.7 189 78.3
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 6.1e-79 297.7 189 77.8
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 6.1e-79 297.7 189 76.7
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 1.0e-78 297.0 189 77.8
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.0e-78 297.0 189 77.8
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 1.0e-78 297.0 189 77.8
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.4e-78 296.6 189 78.3
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 1.8e-78 296.2 189 77.8
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 3.0e-78 295.4 189 77.8
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 3.0e-78 295.4 189 76.7
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 4.0e-78 295.0 189 76.2
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 5.2e-78 294.7 189 76.7
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 8.9e-78 293.9 188 76.6
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 8.9e-78 293.9 186 77.4
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.0e-77 292.7 189 76.2
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 2.0e-77 292.7 186 77.4
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 4.4e-77 291.6 189 76.7
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 7.5e-77 290.8 189 74.6
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 9.8e-77 290.4 189 77.2
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 9.8e-77 290.4 189 77.2
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 9.8e-77 290.4 186 76.9
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.3e-76 290.0 189 75.1
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 1.3e-76 290.0 189 76.2
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 1.3e-76 290.0 189 75.7
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.7e-76 289.7 186 76.3
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 1.7e-76 289.7 186 76.3
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 3.7e-76 288.5 189 74.6
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 3.7e-76 288.5 189 74.6
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.4e-75 286.6 186 75.8
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.4e-75 285.8 189 74.1
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 3.1e-75 285.4 189 75.7
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 3.1e-75 285.4 189 74.1
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 9.2e-75 283.9 189 74.1
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 9.2e-75 283.9 189 74.6
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.0e-74 282.7 189 74.1
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 4.5e-74 281.6 180 77.2
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 8.6e-73 277.3 189 71.4
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 1.1e-72 276.9 189 76.2
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 2.5e-72 275.8 189 71.4
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 4.3e-72 275.0 191 73.3
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 5.6e-72 274.6 191 72.8
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 7.3e-72 274.2 189 73.5
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 9.5e-72 273.9 181 74.0
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.6e-69 265.8 170 75.9
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.9e-68 262.3 175 73.7
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.9e-67 259.6 190 68.4
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.9e-67 259.6 190 68.4
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.6e-66 256.5 189 67.2
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 2.7e-66 255.8 189 67.2
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 4.6e-66 255.0 180 72.2
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.0e-65 253.8 180 71.1
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 2.3e-65 252.7 189 65.1
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 5.0e-65 251.5 189 70.4
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 3.3e-64 248.8 178 72.5
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 8.0e-63 244.2 189 66.7
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.8e-62 243.0 189 68.3
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 1.7e-60 236.5 188 62.8
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 2.2e-60 236.1 189 66.7
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 4.9e-60 235.0 190 62.6
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 6.4e-60 234.6 188 61.2
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 9.2e-59 230.7 188 60.6
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 1.2e-55 220.3 178 60.7
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 2.8e-55 219.2 182 62.6
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.4e-54 216.9 189 54.5
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 1.2e-50 203.8 115 86.1
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.0e-49 200.7 166 66.3
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 6.6e-49 198.0 189 57.7
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 2.2e-44 183.0 188 48.4
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 3.0e-41 172.6 120 69.2
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 2.0e-37 159.8 109 73.4
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.4e-35 153.7 174 52.3
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 4.2e-35 152.1 124 62.9
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.3e-33 147.1 85 85.9
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 8.7e-33 144.4 189 47.1
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 1.1e-32 144.1 123 63.4
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.8e-25 120.2 78 73.1
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 2.0e-21 106.7 92 63.0
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 2.6e-21 106.3 65 76.9
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 1.5e-08 63.9 39 71.8
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 4.8e-07 58.9 35 77.1


User provided reference genes

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