Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 0.0e+00 1154.8 638 100.0
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 8.8e-170 601.3 648 57.1
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 4.0e-122 443.0 751 46.6
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.2e-115 421.4 715 47.8
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.8e-114 417.5 715 47.4
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 4.0e-106 389.8 440 54.5
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 8.6e-101 372.1 654 46.8
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 1.4e-87 328.2 683 43.8
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 5.4e-87 326.2 439 50.3
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 5.4e-87 326.2 720 41.9
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 5.4e-87 326.2 720 41.9
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 8.7e-85 318.9 472 47.2
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 3.3e-84 317.0 427 48.0
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 2.1e-83 314.3 448 46.9
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.1e-82 310.5 446 46.6
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 3.1e-82 310.5 438 47.5
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 6.9e-82 309.3 437 47.6
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 5.8e-81 306.2 592 42.4
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 3.8e-80 303.5 471 46.9
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.1e-79 302.0 455 46.6
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 9.3e-79 298.9 693 41.8
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 3.5e-78 297.0 395 48.6
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 7.9e-78 295.8 406 48.0
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 1.0e-77 295.4 651 37.2
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 1.8e-77 294.7 597 43.6
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.8e-77 294.7 472 44.7
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 2.3e-77 294.3 445 45.4
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 3.0e-77 293.9 651 42.9
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 3.9e-77 293.5 386 49.7
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 5.1e-77 293.1 432 45.4
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 8.7e-77 292.4 475 44.0
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 5.6e-76 289.7 638 42.8
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.6e-75 288.1 638 43.1
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 2.8e-75 287.3 424 45.0
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 2.8e-75 287.3 722 40.7
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 8.1e-75 285.8 433 46.7
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 1.1e-74 285.4 671 41.4
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 1.4e-74 285.0 703 42.5
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 1.4e-74 285.0 397 47.4
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 4.0e-74 283.5 412 46.6
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 6.9e-74 282.7 709 38.6
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 9.0e-74 282.3 513 45.8
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 9.0e-74 282.3 427 46.6
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 1.5e-73 281.6 709 40.1
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 2.6e-73 280.8 363 49.9
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 3.4e-73 280.4 327 50.5
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 3.4e-73 280.4 224 65.2
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 4.5e-73 280.0 634 43.4
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 7.6e-73 279.3 443 44.7
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 9.9e-73 278.9 637 42.5
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 2.9e-72 277.3 375 49.1
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 2.9e-72 277.3 486 42.8
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 2.9e-72 277.3 704 37.5
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 2.9e-72 277.3 398 48.2
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 3.8e-72 276.9 375 47.7
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 4.9e-72 276.6 426 45.1
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 4.9e-72 276.6 461 43.2
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 6.4e-72 276.2 675 42.5
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 1.4e-71 275.0 392 46.4
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 1.9e-71 274.6 436 45.0
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 4.2e-71 273.5 412 46.1
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 5.5e-71 273.1 406 46.8
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 5.5e-71 273.1 472 42.8
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 1.6e-70 271.6 419 45.3
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 1.6e-70 271.6 624 42.3
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 2.1e-70 271.2 676 40.8
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 2.7e-70 270.8 373 48.3
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 2.7e-70 270.8 432 43.8
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 3.5e-70 270.4 413 44.3
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 1.0e-69 268.9 457 44.9
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 3.0e-69 267.3 442 42.8
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 3.9e-69 266.9 197 70.6
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 1.1e-68 265.4 400 45.2
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 2.5e-68 264.2 451 42.4
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 2.5e-68 264.2 447 42.3
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 3.3e-68 263.8 452 41.6
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 5.6e-68 263.1 442 43.0
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 7.4e-68 262.7 460 42.2
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 9.6e-68 262.3 429 43.6
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 1.3e-67 261.9 209 65.1
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.6e-67 261.5 207 66.7
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 2.8e-67 260.8 405 44.0
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 2.8e-67 260.8 209 64.1
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 2.8e-67 260.8 491 43.6
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 3.7e-67 260.4 444 43.0
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 3.7e-67 260.4 713 36.9
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 8.2e-67 259.2 404 42.3
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 1.4e-66 258.5 397 45.6
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 1.8e-66 258.1 423 42.3
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 3.1e-66 257.3 456 41.4
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 5.3e-66 256.5 421 43.9
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 1.5e-65 255.0 227 61.2
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 2.0e-65 254.6 434 44.5
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 2.6e-65 254.2 405 43.5
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 2.6e-65 254.2 405 43.5
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 3.4e-65 253.8 356 46.9
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 4.5e-65 253.4 486 40.3
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 5.8e-65 253.1 182 68.7
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 2.2e-64 251.1 455 42.9
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 2.9e-64 250.8 423 41.8
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 2.5e-63 247.7 426 41.3
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 4.2e-63 246.9 379 44.3
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 7.1e-63 246.1 444 40.1
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 6.1e-62 243.0 282 52.1
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 1.0e-61 242.3 636 37.7
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 1.3e-61 241.9 394 42.4
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 1.3e-61 241.9 618 39.3
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 2.3e-61 241.1 235 55.7
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 5.1e-61 240.0 368 45.1
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 5.1e-61 240.0 427 40.7
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 1.9e-60 238.0 440 42.0
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 3.7e-59 233.8 426 40.8
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 8.2e-59 232.6 169 68.0
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 1.8e-58 231.5 206 60.2
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 2.0e-57 228.0 343 45.8
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 2.0e-57 228.0 183 63.9
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 3.4e-57 227.3 409 40.8
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 1.3e-56 225.3 390 42.6
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 5.5e-55 219.9 441 39.2
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 9.4e-55 219.2 177 62.1
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 7.9e-54 216.1 425 38.4
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 3.9e-53 213.8 215 55.8
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 1.5e-52 211.8 624 32.5
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 4.3e-52 210.3 302 44.7
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.3e-51 208.8 383 39.7
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 4.8e-51 206.8 228 50.0
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 1.4e-50 205.3 205 54.6
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 9.1e-50 202.6 205 54.6
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 1.7e-48 198.4 224 51.3
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 7.2e-47 193.0 384 40.1
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 1.5e-41 175.3 204 49.0
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 6.5e-40 169.9 286 39.5
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 1.4e-37 162.2 244 42.2
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 5.2e-37 160.2 278 40.6
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 2.0e-36 158.3 379 35.4
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 2.0e-36 158.3 321 39.6
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 2.6e-36 157.9 163 52.1
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 3.3e-36 157.5 136 52.9
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 2.8e-35 154.5 141 53.2
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 2.0e-33 148.3 136 54.4
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 2.3e-29 134.8 119 58.0
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 8.8e-29 132.9 119 58.0
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 3.8e-24 117.5 96 66.7
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 3.8e-16 90.9 84 52.4
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 6.6e-16 90.1 71 62.0
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 8.9e-13 79.7 298 34.2
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 9.8e-12 76.3 158 32.3
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 3.2e-10 71.2 108 35.2
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 9.2e-10 69.7 100 41.0
SEGI_25704 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.1e-07 62.8 74 47.3


User provided reference genes

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