Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold156G37306 Striga asiatica HOM05D004952 ORTHO05D006131 0.0e+00 1783.8 886 100.0
MSTRG.25114 Avicennia marina HOM05D004952 ORTHO05D006131 0.0e+00 1141.7 985 61.6
Migut.C00614 Erythranthe guttata HOM05D004952 ORTHO05D006131 0.0e+00 1100.1 963 61.4
SalBow7G3268 Salvia bowleyana HOM05D004952 ORTHO05D006131 5.8e-297 1024.2 987 58.0
Oeu055752.1 Olea europaea HOM05D004952 ORTHO05D006131 1.4e-271 939.9 962 54.7
QL02p006188 Quercus lobata HOM05D004952 ORTHO05D006131 1.1e-258 897.1 999 50.3
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 1.8e-258 896.3 972 52.1
TWI36G1022 Tripterygium wilfordii HOM05D004952 ORTHO05D006131 9.1e-258 894.0 1003 50.5
TAR381G0370 Trochodendron aralioides HOM05D004952 ORTHO05D006131 9.4e-255 884.0 1004 50.5
CiPaw.16G049700 Carya illinoinensis HOM05D004952 ORTHO05D006131 1.6e-254 883.2 1000 49.7
Atru.chr13.612 Acer truncatum HOM05D004952 ORTHO05D006131 2.6e-252 875.9 1003 49.5
PGSC0003DMG400008031 Solanum tuberosum HOM05D004952 ORTHO05D006131 4.5e-249 865.1 983 50.1
Cpa.g.sc64.8 Carica papaya HOM05D004952 ORTHO05D006131 1.1e-247 860.5 980 49.7
Lj4C49T7 Lonicera japonica HOM05D004952 ORTHO05D006131 5.5e-247 858.2 972 51.7
Duzib114G0971 Durio zibethinus HOM05D004952 ORTHO05D006131 1.6e-246 856.7 1003 48.6
CAN.G371.63 Capsicum annuum HOM05D004952 ORTHO05D006131 2.1e-246 856.3 989 49.5
HanXRQChr02g0059171 Helianthus annuus HOM05D004952 ORTHO05D006131 2.7e-246 855.9 955 50.7
Rhsim13G0049200 Rhododendron simsii HOM05D004952 ORTHO05D006131 1.8e-245 853.2 1012 49.6
Sopen04g033000 Solanum pennellii HOM05D004952 ORTHO05D006131 4.0e-245 852.0 989 49.2
Solyc04g079390.3 Solanum lycopersicum HOM05D004952 ORTHO05D006131 1.5e-244 850.1 989 49.0
MD15G1036000 Malus domestica HOM05D004952 ORTHO05D006131 5.7e-244 848.2 982 49.9
RcHm_v2.0_Chr6g0299841 Rosa chinensis HOM05D004952 ORTHO05D006131 2.4e-242 842.8 989 49.1
Lsat_1_v5_gn_6_69040 Lactuca sativa HOM05D004952 ORTHO05D006131 7.0e-242 841.3 973 49.8
CANSAT25G3148 Cannabis sativa HOM05D004952 ORTHO05D006131 2.0e-241 839.7 989 48.7
Gorai.011G225900 Gossypium raimondii HOM05D004952 ORTHO05D006131 3.5e-241 839.0 1006 46.7
Gohir.D10G201200 Gossypium hirsutum HOM05D004952 ORTHO05D006131 5.0e-240 835.1 1006 46.6
Gohir.A10G194100 Gossypium hirsutum HOM05D004952 ORTHO05D006131 1.1e-239 833.9 1006 46.7
Ciclev10000139m.g Citrus clementina HOM05D004952 ORTHO05D006131 2.1e-238 829.7 1009 48.6
Eucgr.F02379 Eucalyptus grandis HOM05D004952 ORTHO05D006131 2.7e-238 829.3 991 48.0
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 2.6e-236 822.8 980 48.1
DCAR_008784 Daucus carota HOM05D004952 ORTHO05D006131 9.8e-236 820.8 980 49.4
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 1.3e-235 820.5 980 48.1
Nitab4.5_0000068g0320 Nicotiana tabacum HOM05D004952 ORTHO05D006131 1.1e-234 817.4 987 48.4
FAN15G3424 Fragaria x ananassa HOM05D004952 ORTHO05D006131 9.1e-234 814.3 990 48.3
FvH4_2g40750 Fragaria vesca HOM05D004952 ORTHO05D006131 2.7e-233 812.8 990 48.5
PSO063G1848 Papaver somniferum HOM05D004952 ORTHO05D006131 1.7e-232 810.1 1009 47.6
Nn6g34572 Nelumbo nucifera HOM05D004952 ORTHO05D006131 6.5e-232 808.1 1005 47.4
vmacro02786 Vaccinium macrocarpon HOM05D004952 ORTHO05D006131 1.9e-231 806.6 992 48.1
FAN27G3039 Fragaria x ananassa HOM05D004952 ORTHO05D006131 4.2e-231 805.4 963 48.6
CsaV3_4G034010 Cucumis sativus L. HOM05D004952 ORTHO05D006131 5.5e-231 805.1 989 47.1
Glyma.06G036500 Glycine max HOM05D004952 ORTHO05D006131 5.5e-231 805.1 999 46.7
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 5.5e-231 805.1 996 47.0
Lj1g0021809 Lotus japonicus HOM05D004952 ORTHO05D006131 8.0e-230 801.2 988 47.2
Medtr3g101230 Medicago truncatula HOM05D004952 ORTHO05D006131 1.8e-229 800.0 995 47.0
Cfa003370 Carpinus fangiana HOM05D004952 ORTHO05D006131 2.3e-229 799.7 1002 47.6
Sed0020372 Sechium edule HOM05D004952 ORTHO05D006131 8.8e-229 797.7 985 47.7
Nitab4.5_0012613g0030 Nicotiana tabacum HOM05D004952 ORTHO05D006131 2.6e-228 796.2 983 47.9
Peaxi162Scf01092g00128 Petunia axillaris HOM05D004952 ORTHO05D006131 2.8e-227 792.7 973 47.7
ClCG05G019550 Citrullus lanatus HOM05D004952 ORTHO05D006131 3.7e-227 792.3 999 46.7
THA.LOC104813523 Tarenaya hassleriana HOM05D004952 ORTHO05D006131 3.7e-227 792.3 1005 45.5
PGR031G2121 Punica granatum HOM05D004952 ORTHO05D006131 1.4e-226 790.4 980 47.2
Lalb_Chr08g0245691 Lupinus albus HOM05D004952 ORTHO05D006131 2.4e-226 789.6 1003 46.1
Aqoxy6G00884 Aquilegia oxysepala HOM05D004952 ORTHO05D006131 4.5e-225 785.4 1007 46.9
COL.COLO4_06475 Corchorus olitorius HOM05D004952 ORTHO05D006131 8.6e-224 781.2 984 45.9
Psat5g044920 Pisum sativum HOM05D004952 ORTHO05D006131 8.6e-224 781.2 954 46.8
Phvul.009G062500 Phaseolus vulgaris HOM05D004952 ORTHO05D006131 1.1e-223 780.8 999 46.4
VMungo1309G1417 Vigna mungo HOM05D004952 ORTHO05D006131 3.6e-222 775.8 998 46.3
GSVIVG01009573001 Vitis vinifera HOM05D004952 ORTHO05D006131 4.0e-221 772.3 970 46.9
Ca_15974_v3 Cicer arietinum L. HOM05D004952 ORTHO05D006131 5.7e-220 768.5 966 46.4
CANSAT35G0575 Cannabis sativa HOM05D004952 ORTHO05D006131 3.2e-218 762.7 972 46.5
Actinidia03540 Actinidia chinensis HOM05D004952 ORTHO05D006131 3.9e-216 755.7 958 47.1
Manes.10G059950 Manihot esculenta HOM05D004952 ORTHO05D006131 3.3e-215 752.7 975 45.7
Sabra16G0008200 Salix brachista HOM05D004952 ORTHO05D006131 4.4e-212 742.3 1070 43.8
Thhalv10018067m.g Eutrema salsugineum HOM05D004952 ORTHO05D006131 7.5e-212 741.5 973 44.9
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 9.8e-212 741.1 1271 39.1
MELO3C016726.2 Cucumis melo HOM05D004952 ORTHO05D006131 3.7e-211 739.2 1005 44.6
Sp5g35550 Schrenkiella parvula HOM05D004952 ORTHO05D006131 3.7e-211 739.2 977 45.5
Carub.0001s2004 Capsella rubella HOM05D004952 ORTHO05D006131 1.9e-210 736.9 971 45.7
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 5.0e-208 728.8 971 45.3
TAR625G1292 Trochodendron aralioides HOM05D004952 ORTHO05D006131 1.9e-207 726.9 1004 44.1
EL10Ac2g03413 Beta vulgaris HOM05D004952 ORTHO05D006131 4.7e-206 722.2 1086 40.7
BcaC03g15988 Brassica carinata HOM05D004952 ORTHO05D006131 8.1e-206 721.5 970 44.8
BcaB02g07284 Brassica carinata HOM05D004952 ORTHO05D006131 7.5e-204 714.9 978 44.6
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 2.1e-201 706.8 974 44.3
AUR62038364 Chenopodium quinoa HOM05D004952 ORTHO05D006131 3.5e-201 706.1 941 45.2
AT1G20570 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 6.6e-200 701.8 986 43.3
Prupe.1G389900 Prunus persica HOM05D004952 ORTHO05D006131 1.6e-198 697.2 835 48.6
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 2.8e-198 696.4 964 44.0
Haze_25582 Corylus avellana HOM05D004952 ORTHO05D006131 1.4e-197 694.1 1047 42.3
AUR62040965 Chenopodium quinoa HOM05D004952 ORTHO05D006131 1.8e-197 693.7 932 45.0
ECA240G1628 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-196 690.6 897 46.2
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 2.1e-190 670.2 967 43.0
Hund10174 Selenicereus undatus HOM05D004952 ORTHO05D006131 2.4e-189 666.8 929 43.5
Dinv39342 Davidia involucrata HOM05D004952 ORTHO05D006131 1.5e-188 664.1 720 52.8
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 9.9e-188 661.4 967 42.8
ATR0706G013 Amborella trichopoda HOM05D004952 ORTHO05D006131 1.4e-186 657.5 1016 40.8
Cc00_g16150 Coffea canephora HOM05D004952 ORTHO05D006131 1.7e-184 650.6 716 52.8
Os02g0523300 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 3.0e-184 649.8 1019 39.9
Aa31LG4G540 Aethionema arabicum HOM05D004952 ORTHO05D006131 1.9e-183 647.1 1023 40.8
Cc10_g03830 Coffea canephora HOM05D004952 ORTHO05D006131 3.6e-182 642.9 697 53.1
Os12g0606100 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 2.4e-181 640.2 1015 39.3
TPR.G26027 Trifolium pratense HOM05D004952 ORTHO05D006131 4.5e-180 636.0 848 45.3
Manes.02G076400 Manihot esculenta HOM05D004952 ORTHO05D006131 5.8e-180 635.6 811 46.4
Zm00001eb327280 Zea mays HOM05D004952 ORTHO05D006131 2.1e-177 627.1 1007 39.4
Hma1.2p1_0260F.1_g104660 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 7.9e-177 625.2 685 51.8
SHI13748 Sapria himalayana HOM05D004952 ORTHO05D006131 6.7e-176 622.1 1022 38.7
Oeu007037.1 Olea europaea HOM05D004952 ORTHO05D006131 4.3e-175 619.4 931 44.4
Thecc.10G126500 Theobroma cacao HOM05D004952 ORTHO05D006131 2.8e-174 616.7 866 43.3
PSO339G5893 Papaver somniferum HOM05D004952 ORTHO05D006131 1.0e-168 598.2 825 45.3
Haze_17576 Corylus avellana HOM05D004952 ORTHO05D006131 1.4e-165 587.8 861 43.3
FAN20G1371 Fragaria x ananassa HOM05D004952 ORTHO05D006131 4.3e-159 566.2 884 41.5
AT1G80260 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 5.7e-151 539.3 836 41.4
CARHR074230 Cardamine hirsuta HOM05D004952 ORTHO05D006131 3.8e-147 526.6 841 40.8
CDE04G1747 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 2.7e-129 467.2 437 56.1
Pp3c13_8820 Physcomitrium patens HOM05D004952 ORTHO05D006131 4.1e-125 453.4 1135 31.3
Mapoly0015s0183 Marchantia polymorpha HOM05D004952 ORTHO05D006131 1.5e-122 444.9 1091 31.3
HPP92_010073 Vanilla planifolia HOM05D004952 ORTHO05D006131 1.2e-121 441.8 885 35.3
AagrBONN_evm.TU.Sc2ySwM_344.3827 Anthoceros agrestis HOM05D004952 ORTHO05D006131 8.8e-120 435.6 968 33.3
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 2.4e-117 427.6 432 56.0
BcaC08g45301 Brassica carinata HOM05D004952 ORTHO05D006131 4.9e-110 403.3 646 41.6
Potri.016G000100 Populus trichocarpa HOM05D004952 ORTHO05D006131 4.9e-110 403.3 617 41.8
CSS0048180 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 5.0e-107 393.3 599 43.6
BolC6t38070H Brassica oleracea HOM05D004952 ORTHO05D006131 3.0e-104 384.0 620 41.9
SEGI_10220 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 2.0e-103 381.3 495 43.8
Potri.014G184701 Populus trichocarpa HOM05D004952 ORTHO05D006131 2.1e-76 291.6 175 78.3
CSS0028060 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 1.5e-74 285.4 170 78.8
CBR_g22067 Chara braunii HOM05D004952 ORTHO05D006131 1.5e-71 275.4 482 37.3
Potri.014G184801 Populus trichocarpa HOM05D004952 ORTHO05D006131 1.2e-68 265.8 215 63.3
Cc00_g35230 Coffea canephora HOM05D004952 ORTHO05D006131 2.8e-65 254.6 315 50.2
SEGI_19344 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 9.0e-64 249.6 661 31.3
Cc00_g35300 Coffea canephora HOM05D004952 ORTHO05D006131 1.7e-62 245.4 296 50.3
SEGI_10713 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 1.6e-60 238.8 162 68.5
C06p29070 Brassica napus HOM05D002649 ORTHO05D002838 4.0e-56 224.2 543 32.2
Actinidia22602 Actinidia chinensis HOM05D004952 ORTHO05D006131 2.3e-51 208.4 130 75.4
SEGI_09331 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 7.4e-42 176.8 289 39.4
Glyma.04G036340 Glycine max HOM05D004952 ORTHO05D006131 2.2e-41 175.3 170 50.6
Prupe.1G390100 Prunus persica HOM05D004952 ORTHO05D006131 9.0e-40 169.9 143 60.1
unitig_0.g725 Utricularia gibba HOM05D004952 ORTHO05D006131 3.6e-36 157.9 196 44.9
Glyma.04G036460 Glycine max HOM05D004952 ORTHO05D006131 1.0e-30 139.8 120 59.2
Ah.16g107230 Amaranthus hybridus HOM05D004952 ORTHO05D006131 1.4e-24 119.4 123 52.0
C06p29060 Brassica napus HOM05D004952 ORTHO05D006131 5.5e-21 107.5 105 51.4
BolC6t38069H Brassica oleracea HOM05D004952 ORTHO05D006131 5.5e-21 107.5 105 51.4
Glyma.04G036420 Glycine max HOM05D004952 ORTHO05D006131 1.0e-19 103.2 89 56.2
CDE06G0077 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 8.2e-17 93.6 125 44.8
MCO11G910 Micromonas commoda HOM05D004952 ORTHO05D006131 8.2e-17 93.6 171 32.2
unitig_0.g726 Utricularia gibba HOM05D004952 ORTHO05D006131 4.1e-16 91.3 71 59.2
BcaB05g23764 Brassica carinata HOM05D004952 ORTHO05D006131 4.5e-15 87.8 60 73.3
Haze_25585 Corylus avellana HOM05D004952 ORTHO05D006131 1.3e-14 86.3 84 54.8
MBI13_g43601_MAGBIO Magnolia biondii HOM05D004952 ORTHO05D018024 4.0e-11 74.7 78 48.7
MELO3C010311.2 Cucumis melo HOM05D004952 ORTHO05D006131 5.2e-11 74.3 53 60.4
MELO3C016650.2 Cucumis melo HOM05D004952 ORTHO05D006131 4.8e-09 67.8 53 64.2
Cre10.g430900 Chlamydomonas reinhardtii HOM05D004952 ORTHO05D006131 6.3e-09 67.4 155 24.5
CBR_g19823 Chara braunii HOM05D004952 ORTHO05D000937 2.4e-08 65.5 244 28.7
MBI03_g03594_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 2.0e-07 62.4 44 61.4
CDE04G0120 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 3.5e-07 61.6 63 44.4
MBI19_g46141_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 1.3e-06 59.7 60 45.0
Lalb_Chr23g0266901 Lupinus albus HOM05D004952 ORTHO05D006131 8.5e-06 57.0 43 60.5


User provided reference genes

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