Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold153G36928 Striga asiatica HOM05D001240 ORTHO05D002450 3.4e-47 191.4 105 100.0
SGA_v2.0_scaffold153G36926 Striga asiatica HOM05D001240 ORTHO05D002450 5.0e-22 107.8 107 64.5
SGA_v2.0_scaffold153G36935 Striga asiatica HOM05D001240 ORTHO05D002450 4.0e-19 98.2 57 91.2
SGA_v2.0_scaffold52G19205 Striga asiatica HOM05D001240 ORTHO05D003764 2.6e-18 95.5 57 89.5
MSTRG.17144 Avicennia marina HOM05D001240 ORTHO05D002450 3.7e-17 91.7 93 63.4
unitig_8.g3840 Utricularia gibba HOM05D001240 ORTHO05D002450 4.1e-16 88.2 57 84.2
Thecc.01G388000 Theobroma cacao HOM05D001240 ORTHO05D002450 2.7e-15 85.5 57 80.7
Oeu061501.1 Olea europaea HOM05D001240 ORTHO05D002450 4.5e-15 84.7 57 80.7
Oeu061502.1 Olea europaea HOM05D001240 ORTHO05D002450 4.5e-15 84.7 57 80.7
COL.COLO4_12451 Corchorus olitorius HOM05D001240 ORTHO05D002450 5.9e-15 84.3 57 80.7
Dinv02630 Davidia involucrata HOM05D001240 ORTHO05D002450 7.7e-15 84.0 96 56.2
Migut.B01559 Erythranthe guttata HOM05D001240 ORTHO05D002450 1.0e-14 83.6 57 78.9
Oeu063219.1 Olea europaea HOM05D001240 ORTHO05D002450 1.0e-14 83.6 57 78.9
CiPaw.14G023600 Carya illinoinensis HOM05D001240 ORTHO05D002450 2.9e-14 82.0 99 53.5
Gohir.A11G077100 Gossypium hirsutum HOM05D001240 ORTHO05D002450 2.9e-14 82.0 57 78.9
Gohir.D11G081500 Gossypium hirsutum HOM05D001240 ORTHO05D002450 2.9e-14 82.0 57 78.9
Gorai.007G087200 Gossypium raimondii HOM05D001240 ORTHO05D002450 2.9e-14 82.0 57 78.9
PGR004G1996 Punica granatum HOM05D001240 ORTHO05D002450 2.9e-14 82.0 61 75.4
Actinidia12166 Actinidia chinensis HOM05D001240 ORTHO05D002450 5.0e-14 81.3 57 78.9
Cc02_g24800 Coffea canephora HOM05D001240 ORTHO05D002450 5.0e-14 81.3 99 54.5
Duzib138G0437 Durio zibethinus HOM05D001240 ORTHO05D002450 5.0e-14 81.3 57 78.9
RcHm_v2.0_Chr1g0346311 Rosa chinensis HOM05D001240 ORTHO05D002450 5.0e-14 81.3 58 75.9
Duzib268G0901 Durio zibethinus HOM05D001240 ORTHO05D002450 6.5e-14 80.9 57 78.9
CiPaw.13G029600 Carya illinoinensis HOM05D001240 ORTHO05D002450 8.5e-14 80.5 96 56.2
Lj9A560G41 Lonicera japonica HOM05D001240 ORTHO05D002450 8.5e-14 80.5 96 54.2
TWI23G0115 Tripterygium wilfordii HOM05D001240 ORTHO05D002450 8.5e-14 80.5 99 54.5
TWI59G0329 Tripterygium wilfordii HOM05D001240 ORTHO05D002450 1.1e-13 80.1 99 52.5
CAN.G255.1 Capsicum annuum HOM05D001240 ORTHO05D002450 1.5e-13 79.7 99 53.5
Ciclev10018789m.g Citrus clementina HOM05D001240 ORTHO05D002450 1.5e-13 79.7 58 74.1
Gohir.D08G040700 Gossypium hirsutum HOM05D001240 ORTHO05D002450 1.5e-13 79.7 57 77.2
Gohir.A08G029900 Gossypium hirsutum HOM05D001240 ORTHO05D002450 1.9e-13 79.3 57 77.2
Gorai.004G039600 Gossypium raimondii HOM05D001240 ORTHO05D002450 1.9e-13 79.3 57 77.2
Lsat_1_v5_gn_4_43721 Lactuca sativa HOM05D001240 ORTHO05D002450 2.5e-13 79.0 57 73.7
Lj1g0014311 Lotus japonicus HOM05D001240 ORTHO05D002450 2.5e-13 79.0 57 71.9
TPR.G39045 Trifolium pratense HOM05D001240 ORTHO05D002450 2.5e-13 79.0 57 71.9
GSVIVG01018223001 Vitis vinifera HOM05D001240 ORTHO05D002450 2.5e-13 79.0 57 75.4
FAN01G0771 Fragaria x ananassa HOM05D001240 ORTHO05D002450 3.2e-13 78.6 58 74.1
FAN06G2617 Fragaria x ananassa HOM05D001240 ORTHO05D002450 3.2e-13 78.6 58 74.1
FAN06G3317 Fragaria x ananassa HOM05D001240 ORTHO05D002450 3.2e-13 78.6 58 74.1
FAN10G1201 Fragaria x ananassa HOM05D001240 ORTHO05D002450 3.2e-13 78.6 58 74.1
FAN10G2665 Fragaria x ananassa HOM05D001240 ORTHO05D002450 3.2e-13 78.6 58 74.1
MD07G1098900 Malus domestica HOM05D001240 ORTHO05D002450 3.2e-13 78.6 57 75.4
Ca_07362_v3 Cicer arietinum L. HOM05D001240 ORTHO05D002450 5.5e-13 77.8 57 70.2
Duzib133G0682 Durio zibethinus HOM05D001240 ORTHO05D002450 5.5e-13 77.8 57 73.7
ECA234G2180 Erigeron canadensis HOM05D001240 ORTHO05D002450 5.5e-13 77.8 57 73.7
Gohir.A08G137833 Gossypium hirsutum HOM05D001240 ORTHO05D002450 5.5e-13 77.8 57 77.2
Gorai.004G165100 Gossypium raimondii HOM05D001240 ORTHO05D002450 5.5e-13 77.8 57 77.2
Manes.05G051900 Manihot esculenta HOM05D001240 ORTHO05D002450 5.5e-13 77.8 102 50.0
ATR0057G002 Amborella trichopoda HOM05D001240 ORTHO05D002450 7.2e-13 77.4 63 68.3
Sabra14G0041000 Salix brachista HOM05D001240 ORTHO05D002450 7.2e-13 77.4 57 75.4
THA.LOC104817201 Tarenaya hassleriana HOM05D001240 ORTHO05D002450 7.2e-13 77.4 57 75.4
VMungo1383G0153 Vigna mungo HOM05D001240 ORTHO05D002450 7.2e-13 77.4 96 54.2
Aa31LG1G26550 Aethionema arabicum HOM05D001240 ORTHO05D002450 9.5e-13 77.0 57 73.7
FAN03G0248 Fragaria x ananassa HOM05D001240 ORTHO05D002450 9.5e-13 77.0 58 72.4
Manes.01G271200 Manihot esculenta HOM05D001240 ORTHO05D002450 9.5e-13 77.0 61 70.5
Phvul.008G141100 Phaseolus vulgaris HOM05D001240 ORTHO05D002450 9.5e-13 77.0 96 54.2
AL4G44060 Arabidopsis lyrata HOM05D001240 ORTHO05D002450 1.2e-12 76.6 57 71.9
AT2G44950 Arabidopsis thaliana HOM05D001240 ORTHO05D002450 1.2e-12 76.6 57 71.9
Carub.0004s2756 Capsella rubella HOM05D001240 ORTHO05D002450 1.2e-12 76.6 57 71.9
CARHR140190 Cardamine hirsuta HOM05D001240 ORTHO05D002450 1.2e-12 76.6 57 71.9
Cpa.g.sc101.41 Carica papaya HOM05D001240 ORTHO05D002450 1.2e-12 76.6 58 72.4
FvH4_7g09510 Fragaria vesca HOM05D001240 ORTHO05D002450 1.2e-12 76.6 58 72.4
HanXRQChr05g0138451 Helianthus annuus HOM05D001240 ORTHO05D002450 1.2e-12 76.6 57 71.9
Sp4g27030 Schrenkiella parvula HOM05D001240 ORTHO05D002450 1.2e-12 76.6 57 71.9
BcaB06g29409 Brassica carinata HOM05D001240 ORTHO05D002450 1.6e-12 76.3 57 71.9
CsaV3_3G007480 Cucumis sativus L. HOM05D001240 ORTHO05D002450 1.6e-12 76.3 58 74.1
Gohir.D08G159100 Gossypium hirsutum HOM05D001240 ORTHO05D002450 1.6e-12 76.3 57 75.4
Sc25g0000760 Simmondsia chinensis HOM05D001240 ORTHO05D002450 1.6e-12 76.3 102 52.0
Atru.chr5.188 Acer truncatum HOM05D001240 ORTHO05D002450 2.1e-12 75.9 58 70.7
MBI04_g09531_MAGBIO Magnolia biondii HOM05D001240 ORTHO05D002450 2.1e-12 75.9 96 53.1
C04p71340 Brassica napus HOM05D001240 ORTHO05D002450 2.7e-12 75.5 57 70.2
Peaxi162Scf00018g00311 Petunia axillaris HOM05D001240 ORTHO05D002450 2.7e-12 75.5 99 51.5
Thhalv10001306m.g Eutrema salsugineum HOM05D001240 ORTHO05D002450 3.6e-12 75.1 57 70.2
MD02G1218200 Malus domestica HOM05D001240 ORTHO05D002450 3.6e-12 75.1 57 71.9
Potri.014G055800 Populus trichocarpa HOM05D001240 ORTHO05D002450 3.6e-12 75.1 57 73.7
CANSAT21G1530 Cannabis sativa HOM05D001240 ORTHO05D002450 4.7e-12 74.7 104 51.9
ClCG05G000330 Citrullus lanatus HOM05D001240 ORTHO05D003764 4.7e-12 74.7 58 72.4
Prupe.2G122900 Prunus persica HOM05D001240 ORTHO05D002450 4.7e-12 74.7 58 70.7
TAR374G1704 Trochodendron aralioides HOM05D001240 ORTHO05D002450 4.7e-12 74.7 61 67.2
vmacro13473 Vaccinium macrocarpon HOM05D001240 ORTHO05D002450 4.7e-12 74.7 99 52.5
arahy.Tifrunner.gnm1.ann1.PNMP4P Arachis hypogaea HOM05D001240 ORTHO05D002450 6.1e-12 74.3 64 62.5
A05p05070 Brassica napus HOM05D001240 ORTHO05D002450 6.1e-12 74.3 57 68.4
BraA05t19481Z Brassica rapa HOM05D001240 ORTHO05D002450 6.1e-12 74.3 57 68.4
AUR62013696 Chenopodium quinoa HOM05D001240 ORTHO05D002450 6.1e-12 74.3 57 64.9
TAR375G0817 Trochodendron aralioides HOM05D001240 ORTHO05D002450 6.1e-12 74.3 61 68.9
HPP92_015119 Vanilla planifolia HOM05D001240 ORTHO05D002450 6.1e-12 74.3 99 50.5
AUR62004133 Chenopodium quinoa HOM05D001240 ORTHO05D002450 8.0e-12 73.9 57 64.9
arahy.Tifrunner.gnm1.ann1.J7EN8P Arachis hypogaea HOM05D001240 ORTHO05D002450 1.0e-11 73.6 64 62.5
BcaC02g07125 Brassica carinata HOM05D001240 ORTHO05D002450 1.0e-11 73.6 57 68.4
A04p33570 Brassica napus HOM05D001240 ORTHO05D002450 1.0e-11 73.6 57 70.2
BolC4t28639H Brassica oleracea HOM05D001240 ORTHO05D002450 1.0e-11 73.6 57 68.4
BraA04t18819Z Brassica rapa HOM05D001240 ORTHO05D002450 1.0e-11 73.6 57 70.2
SalBow5G0872 Salvia bowleyana HOM05D001240 ORTHO05D002450 1.0e-11 73.6 71 62.0
BcaC02g12257 Brassica carinata HOM05D001240 ORTHO05D002450 1.4e-11 73.2 57 66.7
C04p05920 Brassica napus HOM05D001240 ORTHO05D002450 1.4e-11 73.2 57 66.7
BolC4t22223H Brassica oleracea HOM05D001240 ORTHO05D002450 1.4e-11 73.2 57 66.7
DCAR_015857 Daucus carota HOM05D001240 ORTHO05D002450 1.8e-11 72.8 96 51.0
Psat3g180600 Pisum sativum HOM05D001240 ORTHO05D002450 1.8e-11 72.8 57 66.7
Haze_02752 Corylus avellana HOM05D001240 ORTHO05D002450 2.3e-11 72.4 103 47.6
Oeu051908.1 Olea europaea HOM05D001240 ORTHO05D002450 4.0e-11 71.6 57 66.7
Nn1g00928 Nelumbo nucifera HOM05D001240 ORTHO05D002450 5.2e-11 71.2 61 65.6
Ah.05g173400 Amaranthus hybridus HOM05D001240 ORTHO05D002450 6.8e-11 70.9 57 63.2
Cfa011114 Carpinus fangiana HOM05D001240 ORTHO05D002450 6.8e-11 70.9 103 45.6
EL10Ac1g00804 Beta vulgaris HOM05D001240 ORTHO05D002450 8.8e-11 70.5 57 64.9
CDE11G1177 Ceratophyllum demersum HOM05D001240 ORTHO05D002450 8.8e-11 70.5 57 70.2
Medtr7g046250 Medicago truncatula HOM05D001240 ORTHO05D002450 1.2e-10 70.1 57 64.9
Potri.002G141300 Populus trichocarpa HOM05D001240 ORTHO05D002450 2.6e-10 68.9 61 65.6
Lalb_Chr19g0126661 Lupinus albus HOM05D001240 ORTHO05D002450 4.4e-10 68.2 63 61.9
QL04p034731 Quercus lobata HOM05D001240 ORTHO05D002450 4.4e-10 68.2 50 74.0
Sabra02G0110200 Salix brachista HOM05D001240 ORTHO05D002450 4.4e-10 68.2 58 69.0
Sed0002705 Sechium edule HOM05D001240 ORTHO05D002450 4.4e-10 68.2 58 67.2
CDE09G1357 Ceratophyllum demersum HOM05D001240 ORTHO05D002450 7.5e-10 67.4 91 52.7
Rhsim07G0033400 Rhododendron simsii HOM05D001240 ORTHO05D002450 7.5e-10 67.4 110 43.6
Hund17072 Selenicereus undatus HOM05D001240 ORTHO05D002450 1.3e-09 66.6 57 63.2
Solyc11g013370.3 Solanum lycopersicum HOM05D001240 ORTHO05D002450 1.3e-09 66.6 91 50.5
Lalb_Chr03g0040151 Lupinus albus HOM05D001240 ORTHO05D002450 2.2e-09 65.9 65 61.5
PSO017G0984 Papaver somniferum HOM05D001240 ORTHO05D002450 2.2e-09 65.9 58 63.8
Nitab4.5_0000051g0250 Nicotiana tabacum HOM05D001240 ORTHO05D002450 2.8e-09 65.5 49 73.5
Sed0005356 Sechium edule HOM05D001240 ORTHO05D002450 2.8e-09 65.5 58 65.5
Sopen11g008390 Solanum pennellii HOM05D001240 ORTHO05D002450 2.8e-09 65.5 91 50.5
Nitab4.5_0009626g0010 Nicotiana tabacum HOM05D001240 ORTHO05D002450 3.7e-09 65.1 91 50.5
PSO170G3933 Papaver somniferum HOM05D001240 ORTHO05D002450 3.7e-09 65.1 58 63.8
SHI13595 Sapria himalayana HOM05D001240 ORTHO05D002450 3.1e-08 62.0 57 59.6
SEGI_15435 Sequoiadendron giganteum HOM05D001240 ORTHO05D002450 3.1e-08 62.0 57 59.6
Glyma.01G074000 Glycine max HOM05D001240 ORTHO05D002450 4.1e-08 61.6 87 49.4
MELO3C005971.2 Cucumis melo HOM05D001240 ORTHO05D002450 7.0e-08 60.8 50 68.0
SEGI_31179 Sequoiadendron giganteum HOM05D001240 ORTHO05D002450 9.2e-08 60.5 62 54.8
Eucgr.E02757 Eucalyptus grandis HOM05D001240 ORTHO05D002450 1.2e-07 60.1 49 67.3
Aqoxy7G00824 Aquilegia oxysepala HOM05D001240 ORTHO05D002450 1.6e-07 59.7 51 64.7
Pp3c16_2030 Physcomitrium patens HOM05D001240 ORTHO05D002450 4.5e-07 58.2 55 65.5
Os04g0550400 Oryza sativa ssp. japonica HOM05D001240 ORTHO05D002450 7.7e-07 57.4 57 57.9
Pp3c6_18000 Physcomitrium patens HOM05D001240 ORTHO05D002450 1.0e-06 57.0 57 61.4
Manes.15G105500 Manihot esculenta HOM05D001240 ORTHO05D002450 2.3e-06 55.8 57 56.1
Eucgr.J01791 Eucalyptus grandis HOM05D001240 ORTHO05D002450 2.9e-06 55.5 57 54.4
AagrBONN_evm.TU.Sc2ySwM_228.3485 Anthoceros agrestis HOM05D001240 ORTHO05D002450 5.0e-06 54.7 57 54.4
Glyma.14G050200 Glycine max HOM05D001240 ORTHO05D002450 5.0e-06 54.7 57 52.6
vmacro03818 Vaccinium macrocarpon HOM05D001240 ORTHO05D002450 5.0e-06 54.7 57 52.6
arahy.Tifrunner.gnm1.ann1.11HTNE Arachis hypogaea HOM05D001240 ORTHO05D002450 6.6e-06 54.3 58 51.7
Glyma.02G267300 Glycine max HOM05D001240 ORTHO05D002450 6.6e-06 54.3 57 52.6
Hma1.2p1_0972F.1_g242820 Hydrangea macrophylla HOM05D001240 ORTHO05D002450 6.6e-06 54.3 57 56.1
Mapoly0035s0133 Marchantia polymorpha HOM05D001240 ORTHO05D002450 6.6e-06 54.3 48 60.4
Prupe.1G537100 Prunus persica HOM05D001240 ORTHO05D002450 6.6e-06 54.3 57 50.9
TAR633G0029 Trochodendron aralioides HOM05D001240 ORTHO05D002450 6.6e-06 54.3 57 54.4
Phvul.008G214800 Phaseolus vulgaris HOM05D001240 ORTHO05D002450 8.6e-06 53.9 57 52.6
QL01p007971 Quercus lobata HOM05D001240 ORTHO05D002450 8.6e-06 53.9 61 54.1
Thecc.09G213500 Theobroma cacao HOM05D001240 ORTHO05D002450 8.6e-06 53.9 57 52.6
VMungo0647G1617 Vigna mungo HOM05D001240 ORTHO05D002450 8.6e-06 53.9 57 52.6


User provided reference genes

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