Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold147G36333 Striga asiatica HOM05D001179 ORTHO05D003685 6.1e-63 243.8 109 100.0
Aqoxy2G00698 Aquilegia oxysepala HOM05D001179 ORTHO05D003685 1.2e-21 106.7 56 82.1
ECA233G6173 Erigeron canadensis HOM05D001179 ORTHO05D003685 2.6e-21 105.5 56 80.4
Duzib106G1949 Durio zibethinus HOM05D001179 ORTHO05D003685 4.4e-21 104.8 56 80.4
Manes.07G140500 Manihot esculenta HOM05D001179 ORTHO05D003685 4.4e-21 104.8 56 80.4
Thecc.10G182900 Theobroma cacao HOM05D001179 ORTHO05D003685 4.4e-21 104.8 56 80.4
Eucgr.G03132 Eucalyptus grandis HOM05D001179 ORTHO05D003685 5.7e-21 104.4 56 78.6
Lsat_1_v5_gn_8_13581 Lactuca sativa HOM05D001179 ORTHO05D003685 5.7e-21 104.4 56 78.6
Lj8C56G4 Lonicera japonica HOM05D001179 ORTHO05D003685 5.7e-21 104.4 56 80.4
Rhsim03G0151400 Rhododendron simsii HOM05D001179 ORTHO05D003685 5.7e-21 104.4 56 78.6
SGA_v2.0_scaffold223G42888 Striga asiatica HOM05D000287 ORTHO05D000319 5.7e-21 104.4 84 60.7
GSVIVG01032675001 Vitis vinifera HOM05D001179 ORTHO05D003685 5.7e-21 104.4 56 78.6
Ah.12g064220 Amaranthus hybridus HOM05D001179 ORTHO05D003685 7.5e-21 104.0 56 78.6
Gohir.A10G178700 Gossypium hirsutum HOM05D001179 ORTHO05D003685 7.5e-21 104.0 56 80.4
Gohir.D10G185400 Gossypium hirsutum HOM05D001179 ORTHO05D003685 7.5e-21 104.0 56 80.4
Gorai.011G207900 Gossypium raimondii HOM05D001179 ORTHO05D003685 7.5e-21 104.0 56 80.4
HanXRQChr08g0221521 Helianthus annuus HOM05D001179 ORTHO05D003685 7.5e-21 104.0 56 76.8
Dinv21838 Davidia involucrata HOM05D001179 ORTHO05D003685 9.8e-21 103.6 56 78.6
ECA238G4669 Erigeron canadensis HOM05D001179 ORTHO05D003685 9.8e-21 103.6 56 80.4
Peaxi162Scf00167g01325 Petunia axillaris HOM05D001179 ORTHO05D003685 1.3e-20 103.2 56 78.6
Prupe.2G262400 Prunus persica HOM05D001179 ORTHO05D003685 1.3e-20 103.2 55 81.8
Cfa001218 Carpinus fangiana HOM05D001179 ORTHO05D003685 1.7e-20 102.8 55 81.8
Haze_17344 Corylus avellana HOM05D001179 ORTHO05D003685 1.7e-20 102.8 55 81.8
PGR044G2534 Punica granatum HOM05D001179 ORTHO05D003685 1.7e-20 102.8 56 76.8
Nitab4.5_0000375g0200 Nicotiana tabacum HOM05D001179 ORTHO05D003685 2.2e-20 102.4 56 78.6
PGR044G0674 Punica granatum HOM05D001179 ORTHO05D003685 2.2e-20 102.4 56 76.8
VMungo1309G2082 Vigna mungo HOM05D001179 ORTHO05D003685 2.8e-20 102.1 55 80.0
Ca_16879_v3 Cicer arietinum L. HOM05D001179 ORTHO05D003685 3.7e-20 101.7 55 80.0
Hund15827 Selenicereus undatus HOM05D001179 ORTHO05D003685 3.7e-20 101.7 56 76.8
TPR.G16129 Trifolium pratense HOM05D001179 ORTHO05D003685 3.7e-20 101.7 55 80.0
Eucgr.J00124 Eucalyptus grandis HOM05D001179 ORTHO05D003685 4.9e-20 101.3 56 76.8
Glyma.04G221300 Glycine max HOM05D001179 ORTHO05D003685 4.9e-20 101.3 55 80.0
Manes.10G000300 Manihot esculenta HOM05D001179 ORTHO05D003685 4.9e-20 101.3 55 80.0
PGSC0003DMG400016647 Solanum tuberosum HOM05D001179 ORTHO05D003685 4.9e-20 101.3 56 76.8
EL10Ac2g02625 Beta vulgaris HOM05D001179 ORTHO05D003685 6.3e-20 100.9 55 78.2
AUR62030627 Chenopodium quinoa HOM05D001179 ORTHO05D003685 6.3e-20 100.9 56 73.2
HanXRQChr14g0460121 Helianthus annuus HOM05D001179 ORTHO05D003685 6.3e-20 100.9 56 76.8
Nitab4.5_0001743g0010 Nicotiana tabacum HOM05D001179 ORTHO05D003685 6.3e-20 100.9 56 76.8
Nitab4.5_0004599g0060 Nicotiana tabacum HOM05D001179 ORTHO05D003685 6.3e-20 100.9 56 76.8
Oeu036535.1 Olea europaea HOM05D001179 ORTHO05D003685 6.3e-20 100.9 56 76.8
Aa31LG3G3910 Aethionema arabicum HOM05D001179 ORTHO05D003685 8.3e-20 100.5 56 75.0
BcaC05g29410 Brassica carinata HOM05D001179 ORTHO05D003685 8.3e-20 100.5 56 75.0
C05p57140 Brassica napus HOM05D001179 ORTHO05D003685 8.3e-20 100.5 56 75.0
BolC5t34377H Brassica oleracea HOM05D001179 ORTHO05D003685 8.3e-20 100.5 56 75.0
CANSAT56G3903 Cannabis sativa HOM05D001179 ORTHO05D003685 8.3e-20 100.5 55 80.0
Cpa.g.sc2.301 Carica papaya HOM05D001179 ORTHO05D003685 8.3e-20 100.5 56 76.8
Cc02_g05460 Coffea canephora HOM05D001179 ORTHO05D003685 8.3e-20 100.5 56 75.0
Thhalv10021449m.g Eutrema salsugineum HOM05D001179 ORTHO05D003685 8.3e-20 100.5 56 75.0
Glyma.06G144500 Glycine max HOM05D001179 ORTHO05D003685 8.3e-20 100.5 55 78.2
Solyc06g049080.3 Solanum lycopersicum HOM05D001179 ORTHO05D003685 8.3e-20 100.5 56 76.8
Sopen06g015450 Solanum pennellii HOM05D001179 ORTHO05D003685 8.3e-20 100.5 56 76.8
MSTRG.8897 Avicennia marina HOM05D001179 ORTHO05D003685 1.1e-19 100.1 56 75.0
BcaB04g21165 Brassica carinata HOM05D001179 ORTHO05D003685 1.1e-19 100.1 56 75.0
BcaB06g25656 Brassica carinata HOM05D001179 ORTHO05D003685 1.1e-19 100.1 56 75.0
BcaB06g25661 Brassica carinata HOM05D001179 ORTHO05D003685 1.1e-19 100.1 56 75.0
A05p38320 Brassica napus HOM05D001179 ORTHO05D003685 1.1e-19 100.1 56 75.0
BraA05t22623Z Brassica rapa HOM05D001179 ORTHO05D003685 1.1e-19 100.1 56 75.0
CANSAT56G1791 Cannabis sativa HOM05D001179 ORTHO05D003685 1.1e-19 100.1 55 78.2
Peaxi162Scf00739g00213 Petunia axillaris HOM05D001179 ORTHO05D003685 1.1e-19 100.1 56 76.8
THA.LOC104826834 Tarenaya hassleriana HOM05D001179 ORTHO05D003685 1.1e-19 100.1 56 75.0
PSO017G6218 Papaver somniferum HOM05D001179 ORTHO05D003685 1.4e-19 99.8 56 73.2
PSO170G0286 Papaver somniferum HOM05D001179 ORTHO05D003685 1.4e-19 99.8 56 73.2
Phvul.009G141600 Phaseolus vulgaris HOM05D001179 ORTHO05D003685 1.4e-19 99.8 55 78.2
TWI09G0424 Tripterygium wilfordii HOM05D001179 ORTHO05D003685 1.4e-19 99.8 56 75.0
unitig_736.g22963 Utricularia gibba HOM05D001179 ORTHO05D003685 1.4e-19 99.8 55 78.2
MSTRG.27266 Avicennia marina HOM05D001179 ORTHO05D003685 1.8e-19 99.4 52 82.7
QL08p064627 Quercus lobata HOM05D001179 ORTHO05D003685 1.8e-19 99.4 56 76.8
Sp3g09250 Schrenkiella parvula HOM05D001179 ORTHO05D003685 1.8e-19 99.4 56 75.0
CAN.G203.48 Capsicum annuum HOM05D001179 ORTHO05D003685 2.4e-19 99.0 56 75.0
Ciclev10032324m.g Citrus clementina HOM05D001179 ORTHO05D003685 2.4e-19 99.0 56 73.2
Gohir.A05G278100 Gossypium hirsutum HOM05D001179 ORTHO05D003685 2.4e-19 99.0 55 76.4
Gohir.D05G279800 Gossypium hirsutum HOM05D001179 ORTHO05D003685 2.4e-19 99.0 55 76.4
Gorai.009G293300 Gossypium raimondii HOM05D001179 ORTHO05D003685 2.4e-19 99.0 55 76.4
TAR623G0689 Trochodendron aralioides HOM05D001179 ORTHO05D003685 2.4e-19 99.0 56 75.0
Actinidia07798 Actinidia chinensis HOM05D001179 ORTHO05D003685 3.1e-19 98.6 55 74.5
AL3G22460 Arabidopsis lyrata HOM05D001179 ORTHO05D003685 3.1e-19 98.6 56 73.2
BcaC09g48138 Brassica carinata HOM05D001179 ORTHO05D003685 3.1e-19 98.6 56 73.2
BolC1t05344H Brassica oleracea HOM05D001179 ORTHO05D003685 3.1e-19 98.6 56 73.2
BraA01t04214Z Brassica rapa HOM05D001179 ORTHO05D003685 3.1e-19 98.6 56 73.2
CARHR085500 Cardamine hirsuta HOM05D001179 ORTHO05D003685 3.1e-19 98.6 56 73.2
MD01G1164700 Malus domestica HOM05D001179 ORTHO05D003685 3.1e-19 98.6 55 78.2
arahy.Tifrunner.gnm1.ann1.PB70UC Arachis hypogaea HOM05D001179 ORTHO05D003685 4.1e-19 98.2 55 76.4
arahy.Tifrunner.gnm1.ann1.R3C42M Arachis hypogaea HOM05D001179 ORTHO05D003685 4.1e-19 98.2 55 76.4
MSTRG.8372 Avicennia marina HOM05D001179 ORTHO05D003685 4.1e-19 98.2 56 75.0
Carub.0003s1019 Capsella rubella HOM05D001179 ORTHO05D003685 4.1e-19 98.2 56 71.4
Oeu044161.2 Olea europaea HOM05D001179 ORTHO05D003685 4.1e-19 98.2 55 72.7
CANSAT54G3050 Cannabis sativa HOM05D001179 ORTHO05D003685 5.4e-19 97.8 55 74.5
Prupe.6G042300 Prunus persica HOM05D001179 ORTHO05D003685 5.4e-19 97.8 58 72.4
RcHm_v2.0_Chr1g0371971 Rosa chinensis HOM05D001179 ORTHO05D003685 7.0e-19 97.4 55 76.4
Sed0008431 Sechium edule HOM05D001179 ORTHO05D003685 7.0e-19 97.4 55 78.2
Migut.F00601 Erythranthe guttata HOM05D001179 ORTHO05D003685 9.2e-19 97.1 55 76.4
FvH4_7g25730 Fragaria vesca HOM05D001179 ORTHO05D003685 9.2e-19 97.1 55 76.4
FAN01G2567 Fragaria x ananassa HOM05D001179 ORTHO05D003685 9.2e-19 97.1 55 76.4
MD07G1232200 Malus domestica HOM05D001179 ORTHO05D003685 9.2e-19 97.1 55 76.4
Medtr3g094250 Medicago truncatula HOM05D001179 ORTHO05D003685 9.2e-19 97.1 53 79.2
PSO832G1696 Papaver somniferum HOM05D001179 ORTHO05D003685 9.2e-19 97.1 55 76.4
Lalb_Chr08g0239041 Lupinus albus HOM05D001179 ORTHO05D003685 1.2e-18 96.7 55 76.4
Lalb_Chr11g0067941 Lupinus albus HOM05D001179 ORTHO05D003685 1.2e-18 96.7 55 76.4
PSO339G1613 Papaver somniferum HOM05D001179 ORTHO05D003685 1.2e-18 96.7 53 79.2
PSO384G4860 Papaver somniferum HOM05D001179 ORTHO05D003685 1.2e-18 96.7 53 79.2
Psat5g067840 Pisum sativum HOM05D001179 ORTHO05D003685 1.2e-18 96.7 55 76.4
vmacro06882 Vaccinium macrocarpon HOM05D001179 ORTHO05D003685 1.2e-18 96.7 55 74.5
Actinidia31620 Actinidia chinensis HOM05D001179 ORTHO05D003685 1.6e-18 96.3 56 76.8
DCAR_010472 Daucus carota HOM05D001179 ORTHO05D003685 1.6e-18 96.3 56 73.2
Potri.019G057300 Populus trichocarpa HOM05D001179 ORTHO05D003685 2.0e-18 95.9 55 80.0
TWI53G1486 Tripterygium wilfordii HOM05D001179 ORTHO05D003685 2.0e-18 95.9 55 72.7
Lj1g0015160 Lotus japonicus HOM05D001179 ORTHO05D003685 2.7e-18 95.5 55 74.5
AT3G10920 Arabidopsis thaliana HOM05D001179 ORTHO05D003685 3.5e-18 95.1 55 72.7
ClCG03G000100 Citrullus lanatus HOM05D001179 ORTHO05D003685 3.5e-18 95.1 55 74.5
Duzib114G0343 Durio zibethinus HOM05D001179 ORTHO05D003685 3.5e-18 95.1 55 76.4
PGR142G2939 Punica granatum HOM05D001179 ORTHO05D003685 3.5e-18 95.1 55 70.9
Rhsim09G0185000 Rhododendron simsii HOM05D001179 ORTHO05D003685 3.5e-18 95.1 56 71.4
Sc10g0002960 Simmondsia chinensis HOM05D001179 ORTHO05D003685 3.5e-18 95.1 53 75.5
CiPaw.01G305300 Carya illinoinensis HOM05D001179 ORTHO05D003685 4.5e-18 94.7 55 78.2
COL.COLO4_19443 Corchorus olitorius HOM05D001179 ORTHO05D003685 4.5e-18 94.7 55 74.5
Migut.D00823 Erythranthe guttata HOM05D001179 ORTHO05D003685 4.5e-18 94.7 56 71.4
Haze_24459 Corylus avellana HOM05D001179 ORTHO05D003685 5.9e-18 94.4 55 72.7
Lsat_1_v5_gn_3_61900 Lactuca sativa HOM05D001179 ORTHO05D003685 5.9e-18 94.4 52 80.8
GSVIVG01024575001 Vitis vinifera HOM05D001179 ORTHO05D003685 5.9e-18 94.4 55 72.7
Cfa011821 Carpinus fangiana HOM05D001179 ORTHO05D003685 7.8e-18 94.0 55 72.7
CiPaw.14G051200 Carya illinoinensis HOM05D001179 ORTHO05D003685 7.8e-18 94.0 56 67.9
CsaV3_1G004740 Cucumis sativus L. HOM05D001179 ORTHO05D003685 7.8e-18 94.0 55 72.7
Potri.013G092600 Populus trichocarpa HOM05D001179 ORTHO05D003685 7.8e-18 94.0 55 76.4
QL01p025028 Quercus lobata HOM05D001179 ORTHO05D003685 7.8e-18 94.0 55 72.7
Sabra13G0072300 Salix brachista HOM05D001179 ORTHO05D003685 7.8e-18 94.0 55 76.4
HPP92_002074 Vanilla planifolia HOM05D001179 ORTHO05D003685 7.8e-18 94.0 55 72.7
HPP92_002085 Vanilla planifolia HOM05D001179 ORTHO05D003685 7.8e-18 94.0 55 72.7
CDE06G1288 Ceratophyllum demersum HOM05D001179 ORTHO05D003685 1.0e-17 93.6 81 56.8
Zm00001eb285090 Zea mays HOM05D001179 ORTHO05D003685 1.0e-17 93.6 53 75.5
Zm00001eb347200 Zea mays HOM05D001179 ORTHO05D003685 1.0e-17 93.6 53 75.5
Os05g0323900 Oryza sativa ssp. japonica HOM05D001179 ORTHO05D003685 1.3e-17 93.2 53 75.5
CDE07G1965 Ceratophyllum demersum HOM05D001179 ORTHO05D003685 1.7e-17 92.8 56 71.4
AUR62024917 Chenopodium quinoa HOM05D001179 ORTHO05D003685 1.7e-17 92.8 51 74.5
MBI15_g08969_MAGBIO Magnolia biondii HOM05D001179 ORTHO05D003685 1.7e-17 92.8 55 70.9
DCAR_019807 Daucus carota HOM05D001179 ORTHO05D003685 2.3e-17 92.4 55 72.7
THA.LOC104803203 Tarenaya hassleriana HOM05D001179 ORTHO05D003685 3.8e-17 91.7 55 72.7
Cpa.g.sc19.67 Carica papaya HOM05D001179 ORTHO05D003685 8.6e-17 90.5 56 64.3
Atru.chr12.168 Acer truncatum HOM05D001179 ORTHO05D003685 1.9e-16 89.4 48 79.2
Thhalv10006477m.g Eutrema salsugineum HOM05D001179 ORTHO05D003685 1.9e-16 89.4 53 69.8
RcHm_v2.0_Chr5g0072711 Rosa chinensis HOM05D001179 ORTHO05D003685 2.5e-16 89.0 55 69.1
RcHm_v2.0_Chr5g0072741 Rosa chinensis HOM05D001179 ORTHO05D003685 2.5e-16 89.0 55 67.3
Aa31LG10G11240 Aethionema arabicum HOM05D001179 ORTHO05D003685 7.3e-16 87.4 53 69.8
AL5G37680 Arabidopsis lyrata HOM05D001179 ORTHO05D003685 7.3e-16 87.4 53 69.8
BraA09t40384Z Brassica rapa HOM05D001179 ORTHO05D003685 9.5e-16 87.0 53 67.9
AT3G56350 Arabidopsis thaliana HOM05D001179 ORTHO05D003685 1.6e-15 86.3 53 69.8
BolC8t50788H Brassica oleracea HOM05D001179 ORTHO05D003685 2.1e-15 85.9 52 69.2
CARHR166500 Cardamine hirsuta HOM05D001179 ORTHO05D003685 2.8e-15 85.5 52 69.2
Carub.0005s2313 Capsella rubella HOM05D001179 ORTHO05D003685 3.6e-15 85.1 53 67.9
CAN.G607.9 Capsicum annuum HOM05D001179 ORTHO05D003685 8.0e-15 84.0 48 72.9
Mapoly0005s0177 Marchantia polymorpha HOM05D001179 ORTHO05D003685 5.2e-14 81.3 78 53.8
MD03G1053000 Malus domestica HOM05D001179 ORTHO05D003685 8.9e-14 80.5 47 74.5
CBR_g49466 Chara braunii HOM05D001179 ORTHO05D003685 9.8e-13 77.0 53 62.3
CAN.G645.20 Capsicum annuum HOM05D001179 ORTHO05D003685 1.7e-12 76.3 68 55.9
SMO116G0440 Selaginella moellendorffii HOM05D001179 ORTHO05D003685 8.3e-12 73.9 82 51.2
BcaC07g39949 Brassica carinata HOM05D001179 ORTHO05D003685 1.4e-11 73.2 64 51.6
Pp3c19_10240 Physcomitrium patens HOM05D001179 ORTHO05D003685 1.4e-11 73.2 46 71.7
SalBow3G0545 Salvia bowleyana HOM05D001179 ORTHO05D003685 2.0e-10 69.3 48 60.4
SalBow3G4262 Salvia bowleyana HOM05D001179 ORTHO05D003685 2.0e-10 69.3 48 60.4
Actinidia00995 Actinidia chinensis HOM05D001179 ORTHO05D003685 6.0e-10 67.8 35 80.0
Cre13.g605150 Chlamydomonas reinhardtii HOM05D001179 ORTHO05D003685 6.0e-10 67.8 45 66.7
Haze_26188 Corylus avellana HOM05D001179 ORTHO05D003685 1.0e-09 67.0 52 59.6
Lsat_1_v5_gn_3_110340 Lactuca sativa HOM05D001179 ORTHO05D003685 3.0e-09 65.5 51 64.7
MCO14G582 Micromonas commoda HOM05D001179 ORTHO05D003685 3.0e-09 65.5 50 54.0
BcaB06g25657 Brassica carinata HOM05D001179 ORTHO05D003685 6.6e-09 64.3 70 48.6
SGA_v2.0_scaffold247G44849 Striga asiatica HOM05D001179 ORTHO05D003685 6.6e-09 64.3 54 55.6
unitig_90.g27576 Utricularia gibba HOM05D001179 ORTHO05D003685 6.6e-09 64.3 55 56.4
PRCOL_00000354 Prasinoderma coloniale HOM05D001179 ORTHO05D003685 1.9e-08 62.8 59 49.2
Cfa021817 Carpinus fangiana HOM05D001179 ORTHO05D003685 2.5e-08 62.4 50 54.0
Cre02.g096150 Chlamydomonas reinhardtii HOM05D001179 ORTHO05D003685 2.8e-07 58.9 55 45.5
arahy.Tifrunner.gnm1.ann1.Y0JQGL Arachis hypogaea HOM05D001179 ORTHO05D011061 2.3e-06 55.8 27 88.9
CSS0007208 Camellia sinensis var. sinensis HOM05D001179 ORTHO05D003685 2.3e-06 55.8 27 85.2
CSS0020848 Camellia sinensis var. sinensis HOM05D001179 ORTHO05D003685 2.3e-06 55.8 27 85.2
Lsat_1_v5_gn_1_9140 Lactuca sativa HOM05D001179 ORTHO05D003685 4.0e-06 55.1 30 73.3
Lsat_1_v5_gn_2_125000 Lactuca sativa HOM05D001179 ORTHO05D003685 4.0e-06 55.1 27 88.9
Ca_28890_v3 Cicer arietinum L. HOM05D002348 ORTHO05D003685 5.2e-06 54.7 36 52.8
THA.LOC104823172 Tarenaya hassleriana HOM05D001179 ORTHO05D003685 5.2e-06 54.7 31 74.2
arahy.Tifrunner.gnm1.ann1.H81B4F Arachis hypogaea HOM05D001179 ORTHO05D003685 6.8e-06 54.3 27 85.2
Sc11g0005770 Simmondsia chinensis HOM05D001179 ORTHO05D003685 6.8e-06 54.3 30 76.7


User provided reference genes

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