Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 4.2e-68 261.5 162 100.0
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 5.3e-55 218.0 146 95.9
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 2.9e-53 212.2 152 88.8
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 2.5e-52 209.1 152 85.5
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 8.7e-50 200.7 156 80.1
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 1.9e-49 199.5 152 84.9
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.9e-49 199.5 155 81.3
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.9e-49 199.5 155 83.2
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.9e-49 199.5 155 83.2
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 1.6e-48 196.4 158 82.3
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 2.8e-48 195.7 157 80.3
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 3.7e-48 195.3 122 82.8
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 3.7e-48 195.3 122 82.8
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.8e-47 193.0 154 79.9
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 4.1e-47 191.8 121 82.6
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 5.3e-47 191.4 152 81.6
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 5.3e-47 191.4 152 81.6
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 5.3e-47 191.4 154 80.5
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 6.9e-47 191.0 158 78.5
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 9.0e-47 190.7 122 82.0
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 9.0e-47 190.7 124 79.0
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 9.0e-47 190.7 124 79.0
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 9.0e-47 190.7 124 79.0
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.2e-46 190.3 121 81.8
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 1.2e-46 190.3 122 82.0
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 1.5e-46 189.9 122 80.3
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 7.7e-46 187.6 122 81.1
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 1.0e-45 187.2 126 77.8
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 1.3e-45 186.8 124 77.4
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 1.3e-45 186.8 152 75.7
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.2e-45 186.0 122 79.5
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 2.2e-45 186.0 158 76.6
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 2.9e-45 185.7 121 80.2
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 2.9e-45 185.7 122 78.7
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 3.8e-45 185.3 122 77.9
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 3.8e-45 185.3 121 80.2
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 3.8e-45 185.3 117 76.9
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.0e-45 184.9 122 79.5
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 5.0e-45 184.9 120 80.8
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 5.0e-45 184.9 152 79.6
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 6.5e-45 184.5 122 78.7
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 6.5e-45 184.5 152 78.9
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 8.5e-45 184.1 149 83.9
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 8.5e-45 184.1 149 83.9
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 8.5e-45 184.1 121 80.2
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 8.5e-45 184.1 121 79.3
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 1.1e-44 183.7 122 78.7
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 1.1e-44 183.7 119 79.8
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 1.1e-44 183.7 121 79.3
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 1.1e-44 183.7 122 76.2
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.9e-44 183.0 156 76.3
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 2.5e-44 182.6 122 77.9
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 3.2e-44 182.2 122 77.0
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 4.2e-44 181.8 122 77.9
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 4.2e-44 181.8 121 77.7
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 5.5e-44 181.4 127 72.4
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 5.5e-44 181.4 150 73.3
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 5.5e-44 181.4 122 77.9
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 5.5e-44 181.4 122 78.7
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.2e-43 180.3 125 77.6
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 2.7e-43 179.1 124 75.0
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.6e-43 178.7 125 73.6
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.6e-43 178.7 125 73.6
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 3.6e-43 178.7 147 78.9
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 3.6e-43 178.7 121 77.7
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 3.6e-43 178.7 122 77.9
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 4.6e-43 178.3 123 74.0
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 6.1e-43 177.9 126 74.6
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 7.9e-43 177.6 125 72.0
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 7.9e-43 177.6 151 76.2
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 1.8e-42 176.4 120 76.7
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 2.3e-42 176.0 122 75.4
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 6.7e-42 174.5 152 77.6
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 6.7e-42 174.5 121 76.0
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 8.8e-42 174.1 121 71.9
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 1.1e-41 173.7 125 76.0
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 1.5e-41 173.3 136 69.1
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.0e-41 172.9 124 71.0
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 2.5e-41 172.6 150 68.7
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 3.3e-41 172.2 153 73.9
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 4.3e-41 171.8 120 74.2
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 4.3e-41 171.8 121 74.4
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 5.7e-41 171.4 150 68.0
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 5.7e-41 171.4 123 70.7
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 7.4e-41 171.0 122 72.1
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 7.4e-41 171.0 150 66.0
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 7.4e-41 171.0 119 72.3
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 9.7e-41 170.6 120 73.3
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.7e-40 169.9 120 72.5
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 1.7e-40 169.9 120 73.3
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 2.8e-40 169.1 120 74.2
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 3.7e-40 168.7 130 67.7
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.1e-39 167.2 125 74.4
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 1.4e-39 166.8 122 71.3
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.8e-39 166.4 149 70.5
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 2.4e-39 166.0 120 71.7
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 2.4e-39 166.0 120 71.7
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 2.4e-39 166.0 120 71.7
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 3.1e-39 165.6 120 72.5
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 3.1e-39 165.6 119 70.6
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 3.1e-39 165.6 119 70.6
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 3.1e-39 165.6 119 70.6
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 4.1e-39 165.2 155 65.2
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 5.3e-39 164.9 122 71.3
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 5.3e-39 164.9 120 70.8
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.2e-38 163.7 119 69.7
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.5e-38 163.3 102 82.4
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 2.0e-38 162.9 119 69.7
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 1.0e-37 160.6 121 67.8
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 1.0e-37 160.6 129 67.4
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 6.5e-37 157.9 120 70.0
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.1e-36 157.1 121 64.5
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 7.2e-36 154.5 121 71.9
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 3.6e-35 152.1 103 79.6
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 7.9e-35 151.0 97 82.5
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 1.0e-34 150.6 193 49.7
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 1.8e-34 149.8 122 64.8
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 2.3e-34 149.4 148 52.7
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 8.8e-34 147.5 121 62.8
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 2.6e-33 146.0 123 61.0
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 9.7e-33 144.1 98 77.6
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 1.3e-32 143.7 97 79.4
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.8e-32 142.5 93 77.4
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 4.1e-31 138.7 94 79.8
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 2.0e-30 136.3 121 57.0
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 3.8e-29 132.1 121 54.5
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 2.5e-28 129.4 124 54.0
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 1.8e-26 123.2 132 53.0
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 2.6e-25 119.4 83 74.7
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 3.7e-24 115.5 121 48.8
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 3.1e-23 112.5 90 63.3
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 3.1e-23 112.5 90 63.3
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 3.1e-23 112.5 79 72.2
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 4.7e-19 98.6 85 74.1
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 6.1e-19 98.2 101 57.4
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 1.0e-18 97.4 98 66.3
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 1.0e-18 97.4 98 66.3
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 7.5e-17 91.3 73 68.5
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.7e-16 89.0 96 57.3
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 4.7e-11 72.0 49 65.3
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 4.9e-08 62.0 50 68.0


User provided reference genes

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