Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 1.9e-133 479.2 240 100.0
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 1.7e-113 412.9 242 84.7
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 4.7e-92 341.7 241 69.3
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 1.5e-85 320.1 240 67.1
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 2.9e-81 305.8 241 63.5
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 1.6e-79 300.1 238 60.1
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 2.3e-70 269.6 241 57.7
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.9e-70 268.9 243 56.0
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 6.6e-70 268.1 243 56.0
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 1.9e-69 266.5 243 55.6
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 3.3e-69 265.8 241 57.7
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 2.8e-68 262.7 240 54.6
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 4.7e-68 261.9 240 55.8
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 5.2e-67 258.5 242 55.4
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 2.0e-66 256.5 237 53.6
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.6e-66 256.1 238 55.9
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.9e-64 250.0 236 53.4
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.9e-64 250.0 237 53.2
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.1e-64 248.8 239 54.0
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 4.1e-64 248.8 230 53.0
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 5.4e-64 248.4 231 52.8
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 9.2e-64 247.7 237 51.5
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 9.2e-64 247.7 231 52.8
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 9.2e-64 247.7 237 53.2
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.6e-63 246.9 227 53.3
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.1e-63 246.5 235 51.1
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 2.7e-63 246.1 237 51.5
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 2.7e-63 246.1 237 52.7
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 3.5e-63 245.7 227 53.7
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 3.5e-63 245.7 235 52.3
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 3.5e-63 245.7 230 53.0
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 3.5e-63 245.7 237 53.2
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 4.6e-63 245.4 227 52.0
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 6.0e-63 245.0 235 52.3
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.0e-62 244.2 237 52.7
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.7e-62 243.4 231 51.9
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.7e-62 243.4 237 51.9
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 6.6e-62 241.5 227 52.9
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.6e-62 241.5 230 52.6
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 7.3e-61 238.0 234 53.4
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 6.2e-60 235.0 235 50.2
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 6.2e-60 235.0 237 48.5
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.4e-59 233.8 241 47.7
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.8e-59 233.4 229 51.1
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 1.8e-59 233.4 235 49.4
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 3.1e-59 232.6 237 48.5
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 2.0e-58 229.9 237 51.5
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.4e-58 228.8 231 50.6
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 7.6e-58 228.0 238 50.8
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 2.2e-57 226.5 237 48.1
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 3.8e-57 225.7 225 49.3
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 8.4e-57 224.6 195 54.9
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 8.4e-57 224.6 201 56.2
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 1.1e-56 224.2 225 48.9
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.4e-56 223.8 244 49.2
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 2.4e-56 223.0 228 48.2
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 3.2e-56 222.6 232 50.0
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 5.4e-56 221.9 228 47.4
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 5.4e-56 221.9 236 48.3
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 7.1e-56 221.5 225 48.4
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 2.7e-55 219.5 229 49.3
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 3.5e-55 219.2 241 48.1
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.3e-54 217.2 225 48.9
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.3e-54 217.2 232 45.3
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.3e-54 217.2 244 47.5
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 2.3e-54 216.5 211 53.6
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.3e-54 216.5 227 44.9
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.0e-54 216.1 241 47.3
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.0e-54 216.1 241 47.3
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 3.0e-54 216.1 241 47.7
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 3.9e-54 215.7 211 53.6
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 6.6e-54 214.9 238 45.0
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 8.7e-54 214.5 169 66.3
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.3e-53 212.6 229 49.3
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.1e-52 209.9 228 49.6
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 2.1e-52 209.9 196 50.5
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.8e-52 208.8 235 45.1
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.8e-52 208.8 235 45.1
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.2e-52 208.4 235 45.1
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 1.1e-51 207.6 235 45.1
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.4e-51 207.2 229 48.9
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 1.4e-51 207.2 221 50.7
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.8e-51 206.8 235 44.7
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 2.4e-51 206.5 230 47.4
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 3.1e-51 206.1 235 44.3
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 4.0e-51 205.7 248 46.8
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 4.0e-51 205.7 231 49.4
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 5.3e-51 205.3 227 48.0
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 5.3e-51 205.3 235 43.4
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 1.7e-49 200.3 232 49.6
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 1.1e-48 197.6 227 46.7
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.4e-48 197.2 231 44.2
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.4e-48 197.2 226 45.6
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 1.9e-48 196.8 238 49.2
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 3.2e-48 196.1 228 44.7
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 7.1e-48 194.9 235 42.6
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.2e-47 194.1 230 46.1
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.2e-47 194.1 235 45.5
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 1.2e-47 194.1 147 64.6
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 2.7e-47 193.0 230 45.2
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 4.6e-47 192.2 235 43.4
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 7.9e-47 191.4 235 42.6
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.0e-46 191.0 235 43.8
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 8.7e-46 188.0 230 43.5
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 8.7e-46 188.0 235 42.1
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 1.9e-45 186.8 230 43.5
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 1.9e-45 186.8 230 43.9
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 1.9e-45 186.8 230 43.5
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 1.9e-45 186.8 230 43.9
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 2.5e-45 186.4 230 42.6
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 2.5e-45 186.4 231 44.6
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.3e-45 186.0 233 41.2
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 4.3e-45 185.7 237 42.6
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 7.4e-45 184.9 230 44.3
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 1.3e-44 184.1 157 58.6
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 1.6e-44 183.7 231 44.6
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 2.1e-44 183.3 220 42.3
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 2.8e-44 183.0 231 45.5
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.1e-43 181.0 232 44.0
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.4e-43 179.9 229 42.4
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 6.9e-43 178.3 188 45.2
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 9.0e-43 177.9 229 45.4
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.5e-42 177.2 228 42.5
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 7.6e-42 174.9 231 41.1
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 9.9e-42 174.5 230 40.9
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.7e-41 173.7 212 44.3
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.2e-41 173.3 229 41.5
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 8.4e-41 171.4 225 42.7
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 1.4e-40 170.6 175 47.4
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 3.2e-40 169.5 204 46.6
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 4.2e-40 169.1 223 43.0
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 4.6e-39 165.6 223 43.5
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 7.9e-39 164.9 231 40.7
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 1.0e-38 164.5 228 41.7
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.8e-38 163.7 151 51.7
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 1.1e-37 161.0 234 41.5
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 1.1e-37 161.0 234 41.5
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 2.5e-37 159.8 234 43.2
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 7.4e-37 158.3 223 42.2
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 2.8e-36 156.4 213 38.5
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.7e-36 156.0 164 48.2
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 4.8e-36 155.6 180 45.6
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 8.2e-36 154.8 192 44.3
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 5.3e-35 152.1 216 36.6
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 1.5e-34 150.6 223 35.0
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.0e-33 147.9 151 48.3
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 2.2e-33 146.7 216 35.6
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.5e-32 143.3 217 40.1
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.5e-32 143.3 146 51.4
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.3e-30 137.5 151 45.0
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 3.0e-30 136.3 216 31.9
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 1.3e-28 131.0 216 31.0
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 2.4e-27 126.7 234 32.1
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 4.1e-27 125.9 215 33.0
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 2.0e-26 123.6 114 57.0
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 5.9e-26 122.1 196 34.2
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.2e-25 120.2 175 40.6
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 1.1e-24 117.9 122 45.9
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 2.5e-24 116.7 139 42.4
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 3.0e-22 109.8 110 46.4
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.9e-21 107.1 105 50.5
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.5e-21 106.7 151 42.4
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 8.2e-20 101.7 142 45.1
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 8.2e-20 101.7 77 62.3
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 2.2e-17 93.6 120 45.8
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.1e-15 87.0 223 32.3
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 6.7e-14 82.0 78 47.4
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 1.1e-13 81.3 101 52.5
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 2.2e-12 77.0 91 41.8
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 3.7e-12 76.3 157 28.7
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 6.3e-12 75.5 71 46.5
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 2.0e-10 70.5 98 37.8
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.6e-10 70.1 92 37.0
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.6e-10 70.1 66 54.5
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.0e-09 68.2 59 57.6
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 2.9e-09 66.6 90 40.0
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 8.5e-09 65.1 110 32.7
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 1.2e-07 61.2 99 31.3
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.2e-07 61.2 99 31.3
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.6e-07 60.8 53 54.7


User provided reference genes

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