Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 3.4e-189 664.8 337 100.0
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 5.5e-147 524.6 314 83.1
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 1.0e-145 520.4 315 82.2
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 5.5e-139 498.0 314 79.6
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 1.5e-128 463.4 316 72.8
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 1.8e-126 456.4 315 71.1
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 2.4e-126 456.1 316 71.2
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 4.1e-126 455.3 317 72.9
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 4.1e-126 455.3 317 72.9
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 5.4e-126 454.9 315 70.8
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 2.0e-125 453.0 315 69.8
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 3.5e-125 452.2 315 70.5
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 7.7e-125 451.1 315 71.7
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 1.7e-124 449.9 319 70.8
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 2.2e-124 449.5 315 69.8
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 2.5e-123 446.0 316 71.8
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 2.7e-122 442.6 320 70.9
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 6.1e-122 441.4 317 69.1
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 8.0e-122 441.0 319 70.2
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 1.0e-121 440.7 316 71.8
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 1.0e-121 440.7 322 68.9
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 3.0e-121 439.1 316 70.9
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 5.2e-121 438.3 358 63.4
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 5.2e-121 438.3 317 68.8
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 1.5e-120 436.8 322 69.3
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 4.4e-120 435.3 318 68.6
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 4.9e-119 431.8 319 64.9
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 6.3e-119 431.4 320 68.8
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 6.3e-119 431.4 316 68.4
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 6.3e-119 431.4 315 69.2
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 1.4e-118 430.3 317 68.8
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 3.1e-118 429.1 316 67.1
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 4.1e-118 428.7 319 66.8
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 7.0e-118 427.9 319 67.4
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.2e-117 427.2 318 67.6
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 3.5e-117 425.6 317 68.1
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 5.9e-117 424.9 320 66.6
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 1.0e-116 424.1 321 67.9
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 6.6e-116 421.4 316 69.9
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 1.1e-115 420.6 319 65.8
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 1.1e-115 420.6 317 67.8
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 1.1e-115 420.6 317 66.6
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 1.5e-115 420.2 319 66.1
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 1.5e-115 420.2 320 65.3
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 2.5e-115 419.5 318 67.0
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 3.3e-115 419.1 318 67.0
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 4.2e-115 418.7 317 69.1
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 4.2e-115 418.7 320 65.6
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 5.6e-115 418.3 318 66.7
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 5.6e-115 418.3 317 65.9
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 9.5e-115 417.5 317 66.9
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 9.5e-115 417.5 323 65.3
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.2e-114 417.2 319 66.8
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 1.2e-114 417.2 321 66.7
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 1.6e-114 416.8 317 66.6
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.6e-114 416.8 320 65.3
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 1.6e-114 416.8 316 66.1
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.1e-114 416.4 320 65.3
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 2.8e-114 416.0 318 65.7
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 2.8e-114 416.0 320 65.3
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.8e-114 416.0 320 65.0
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 3.6e-114 415.6 323 66.3
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 4.7e-114 415.2 314 65.6
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 4.7e-114 415.2 315 69.5
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 6.1e-114 414.8 315 64.4
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 6.1e-114 414.8 314 65.3
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 1.0e-113 414.1 318 65.7
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.0e-113 414.1 320 64.7
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 1.0e-113 414.1 314 65.9
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 1.0e-113 414.1 361 59.3
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.4e-113 413.7 320 64.7
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 8.9e-113 411.0 318 62.9
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 8.9e-113 411.0 318 62.9
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 1.2e-112 410.6 323 63.5
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 1.2e-112 410.6 323 63.8
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 2.0e-112 409.8 323 63.5
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 2.6e-112 409.5 319 63.9
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 3.4e-112 409.1 323 63.5
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 3.4e-112 409.1 323 63.2
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 3.4e-112 409.1 319 64.3
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 5.7e-112 408.3 317 65.6
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 7.5e-112 407.9 322 63.4
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 7.5e-112 407.9 321 63.6
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 9.8e-112 407.5 323 63.5
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 1.3e-111 407.1 321 63.2
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 1.3e-111 407.1 323 62.8
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 4.9e-111 405.2 322 64.6
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 8.3e-111 404.4 323 63.2
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 2.4e-110 402.9 325 62.8
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 5.4e-110 401.7 323 62.2
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 1.2e-109 400.6 323 62.5
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 1.6e-109 400.2 261 76.6
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 2.7e-109 399.4 323 62.2
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 3.5e-109 399.1 316 62.0
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 3.5e-109 399.1 318 61.6
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 4.6e-109 398.7 320 61.2
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 2.9e-108 396.0 323 62.8
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 5.0e-108 395.2 323 61.3
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 1.5e-107 393.7 351 58.1
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 2.5e-107 392.9 323 61.0
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 1.6e-106 390.2 318 63.2
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 2.3e-105 386.3 317 61.5
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 6.8e-105 384.8 316 61.1
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 2.6e-104 382.9 317 60.6
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 2.2e-103 379.8 319 61.1
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 6.4e-103 378.3 319 60.8
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 1.1e-102 377.5 323 60.4
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 4.3e-99 365.5 317 56.8
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 6.4e-95 351.7 285 60.7
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 1.4e-94 350.5 252 67.5
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 3.3e-83 312.8 320 47.2
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 7.6e-80 301.6 338 46.2
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 1.1e-78 297.7 329 49.2
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 3.2e-70 269.6 317 44.5
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 2.8e-66 256.5 157 80.9
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 3.4e-64 249.6 224 58.0
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 1.1e-59 234.6 246 51.2
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 5.6e-59 232.3 167 67.1
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 9.6e-59 231.5 165 67.9
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 2.1e-58 230.3 167 66.5
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 3.5e-53 213.0 315 39.0
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 1.6e-50 204.1 150 68.7
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 1.0e-47 194.9 135 70.4
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 2.5e-46 190.3 131 72.5
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 2.3e-44 183.7 323 33.7
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 1.0e-39 168.3 291 40.2
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 1.8e-36 157.5 106 69.8
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 3.0e-36 156.8 152 53.9
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 6.7e-36 155.6 100 75.0
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 8.8e-36 155.2 99 72.7
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 2.5e-35 153.7 97 72.2
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 3.3e-35 153.3 97 72.2
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 6.3e-34 149.1 111 65.8
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 2.4e-33 147.1 101 69.3
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 4.1e-33 146.4 190 44.7
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 5.9e-32 142.5 99 68.7
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 2.9e-31 140.2 262 32.1
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 1.1e-30 138.3 342 29.2
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 1.9e-30 137.5 188 42.6
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 1.4e-28 131.3 99 61.6
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 9.7e-27 125.2 82 69.5
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 9.7e-27 125.2 82 69.5
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 4.8e-26 122.9 164 40.2
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 9.1e-25 118.6 156 44.2
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 4.2e-22 109.8 136 47.1
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 2.6e-19 100.5 123 47.2
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.7e-18 97.8 121 46.3
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 6.3e-18 95.9 114 44.7
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 2.4e-17 94.0 123 48.0
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 1.3e-15 88.2 100 50.0
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 5.2e-12 76.3 43 81.4
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 4.1e-09 66.6 51 64.7
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 5.9e-08 62.8 111 40.5
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 2.2e-07 60.8 58 56.9
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 4.2e-06 56.6 40 65.0


User provided reference genes

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