Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold145G36043 Striga asiatica HOM05D000489 ORTHO05D000372 1.6e-89 332.8 172 100.0
SGA_v2.0_scaffold45G17307 Striga asiatica HOM05D000489 ORTHO05D000372 1.0e-11 74.3 166 34.3
SGA_v2.0_scaffold83G26283 Striga asiatica HOM05D000489 ORTHO05D000372 1.2e-09 67.4 162 32.1
COL.COLO4_33856 Corchorus olitorius HOM05D000489 ORTHO05D000372 1.6e-09 67.0 113 38.1
COL.COLO4_33864 Corchorus olitorius HOM05D000489 ORTHO05D000372 1.6e-09 67.0 153 34.0
MSTRG.5262 Avicennia marina HOM05D000489 ORTHO05D000372 3.6e-09 65.9 163 31.9
arahy.Tifrunner.gnm1.ann1.7W2D79 Arachis hypogaea HOM05D000489 ORTHO05D000372 6.1e-09 65.1 113 37.2
Duzib132G0082 Durio zibethinus HOM05D000489 ORTHO05D000372 6.1e-09 65.1 119 34.5
arahy.Tifrunner.gnm1.ann1.VY6T3Y Arachis hypogaea HOM05D002060 ORTHO05D000372 8.0e-09 64.7 106 37.7
CiPaw.05G038100 Carya illinoinensis HOM05D000489 ORTHO05D000372 1.0e-08 64.3 159 34.6
CiPaw.06G152200 Carya illinoinensis HOM05D000489 ORTHO05D000372 1.4e-08 63.9 117 34.2
Peaxi162Scf00152g01116 Petunia axillaris HOM05D000489 ORTHO05D000372 1.4e-08 63.9 140 34.3
Ah.14g085460 Amaranthus hybridus HOM05D000489 ORTHO05D000372 2.3e-08 63.2 119 36.1
arahy.Tifrunner.gnm1.ann1.PF0WST Arachis hypogaea HOM05D000489 ORTHO05D000372 2.3e-08 63.2 111 36.9
AUR62027376 Chenopodium quinoa HOM05D000489 ORTHO05D000372 2.3e-08 63.2 126 29.4
AUR62031292 Chenopodium quinoa HOM05D000489 ORTHO05D000372 2.3e-08 63.2 116 31.0
MELO3C018657.2 Cucumis melo HOM05D000489 ORTHO05D000372 2.3e-08 63.2 99 37.4
Migut.B00627 Erythranthe guttata HOM05D000489 ORTHO05D000372 2.3e-08 63.2 115 33.9
Sed0020787 Sechium edule HOM05D000489 ORTHO05D000372 2.3e-08 63.2 120 36.7
Lalb_Chr10g0097701 Lupinus albus HOM05D000489 ORTHO05D000372 3.0e-08 62.8 118 34.7
CSS0029345 Camellia sinensis var. sinensis HOM05D000489 ORTHO05D000372 3.9e-08 62.4 149 32.2
CsaV3_7G006350 Cucumis sativus L. HOM05D000489 ORTHO05D000372 3.9e-08 62.4 95 37.9
Os03g0192600 Oryza sativa ssp. japonica HOM05D000489 ORTHO05D000372 3.9e-08 62.4 111 35.1
EL10Ac8g19349 Beta vulgaris HOM05D000489 ORTHO05D000372 5.2e-08 62.0 99 34.3
Thecc.02G142100 Theobroma cacao HOM05D000489 ORTHO05D000372 5.2e-08 62.0 119 33.6
MSTRG.16571 Avicennia marina HOM05D000489 ORTHO05D000372 6.7e-08 61.6 159 30.2
GSVIVG01029796001 Vitis vinifera HOM05D000489 ORTHO05D000372 6.7e-08 61.6 121 33.9
Cpa.g.sc100.24 Carica papaya HOM05D000489 ORTHO05D000372 8.8e-08 61.2 97 38.1
Duzib052G1027 Durio zibethinus HOM05D000489 ORTHO05D000372 8.8e-08 61.2 119 31.9
Ca_18339_v3 Cicer arietinum L. HOM05D000489 ORTHO05D000372 1.1e-07 60.8 123 35.8
DCAR_021847 Daucus carota HOM05D000489 ORTHO05D000372 1.1e-07 60.8 87 35.6
Lalb_Chr20g0123091 Lupinus albus HOM05D000489 ORTHO05D000372 1.1e-07 60.8 143 35.0
Rhsim11G0135800 Rhododendron simsii HOM05D000489 ORTHO05D000372 1.1e-07 60.8 120 35.0
Actinidia00258 Actinidia chinensis HOM05D000489 ORTHO05D000372 1.5e-07 60.5 115 31.3
QL11p019810 Quercus lobata HOM05D000489 ORTHO05D000372 1.5e-07 60.5 136 32.4
Sabra03G0011600 Salix brachista HOM05D000489 ORTHO05D000372 1.5e-07 60.5 149 29.5
Manes.14G166800 Manihot esculenta HOM05D000489 ORTHO05D000372 2.0e-07 60.1 108 35.2
Oeu000237.1 Olea europaea HOM05D000489 ORTHO05D000372 2.0e-07 60.1 161 31.7
Sabra01G0162300 Salix brachista HOM05D000489 ORTHO05D000372 2.0e-07 60.1 128 32.8
Cfa005629 Carpinus fangiana HOM05D000489 ORTHO05D000372 2.6e-07 59.7 162 34.0
MD08G1221100 Malus domestica HOM05D000489 ORTHO05D000372 2.6e-07 59.7 88 35.2
Potri.009G158100 Populus trichocarpa HOM05D000489 ORTHO05D000372 2.6e-07 59.7 133 31.6
BolC2t06342H Brassica oleracea HOM05D000489 ORTHO05D000372 3.3e-07 59.3 102 31.4
PSO133G0081 Papaver somniferum HOM05D000489 ORTHO05D000372 3.3e-07 59.3 116 34.5
CANSAT11G2140 Cannabis sativa HOM05D000489 ORTHO05D000372 4.4e-07 58.9 154 32.5
VMungo0540G2188 Vigna mungo HOM05D000489 ORTHO05D000372 4.4e-07 58.9 108 32.4
Glyma.15G052200 Glycine max HOM05D000489 ORTHO05D000372 5.7e-07 58.5 147 34.7
Gohir.A12G014300 Gossypium hirsutum HOM05D000489 ORTHO05D000372 5.7e-07 58.5 147 32.0
Nn5g29038 Nelumbo nucifera HOM05D000489 ORTHO05D000372 5.7e-07 58.5 119 31.9
arahy.Tifrunner.gnm1.ann1.PI996E Arachis hypogaea HOM05D002060 ORTHO05D002098 7.4e-07 58.2 130 33.8
arahy.Tifrunner.gnm1.ann1.UVCD4T Arachis hypogaea HOM05D002060 ORTHO05D000372 7.4e-07 58.2 130 33.8
Actinidia00782 Actinidia chinensis HOM05D000489 ORTHO05D000372 9.7e-07 57.8 143 33.6
Ah.09g232010 Amaranthus hybridus HOM05D000489 ORTHO05D000372 9.7e-07 57.8 152 31.6
Gohir.D02G195700 Gossypium hirsutum HOM05D000489 ORTHO05D000372 9.7e-07 57.8 143 30.1
Gorai.005G218700 Gossypium raimondii HOM05D000489 ORTHO05D000372 9.7e-07 57.8 143 30.1
Lalb_Chr17g0340121 Lupinus albus HOM05D000489 ORTHO05D000372 9.7e-07 57.8 133 31.6
PSO541G5398 Papaver somniferum HOM05D000489 ORTHO05D000372 9.7e-07 57.8 116 33.6
Potri.003G020200 Populus trichocarpa HOM05D000489 ORTHO05D000372 9.7e-07 57.8 149 32.2
vmacro19921 Vaccinium macrocarpon HOM05D000489 ORTHO05D000372 9.7e-07 57.8 145 28.3
BcaB05g21558 Brassica carinata HOM05D000489 ORTHO05D000372 1.3e-06 57.4 118 30.5
ClCG09G015260 Citrullus lanatus HOM05D000489 ORTHO05D000372 1.3e-06 57.4 126 32.5
Duzib248G1232 Durio zibethinus HOM05D000489 ORTHO05D000372 1.3e-06 57.4 157 31.2
arahy.Tifrunner.gnm1.ann1.3V4SEB Arachis hypogaea HOM05D002060 ORTHO05D000372 1.7e-06 57.0 94 37.2
Gohir.A03G172500 Gossypium hirsutum HOM05D000489 ORTHO05D000372 1.7e-06 57.0 128 31.2
Phvul.002G207400 Phaseolus vulgaris HOM05D000489 ORTHO05D000372 1.7e-06 57.0 125 34.4
TAR381G0274 Trochodendron aralioides HOM05D000489 ORTHO05D000372 1.7e-06 57.0 146 31.5
Aqoxy2G03424 Aquilegia oxysepala HOM05D002080 ORTHO05D002062 2.2e-06 56.6 136 33.8
Thhalv10014820m.g Eutrema salsugineum HOM05D000489 ORTHO05D000372 2.2e-06 56.6 108 32.4
Haze_10639 Corylus avellana HOM05D000489 ORTHO05D000372 2.8e-06 56.2 171 33.3
Gorai.008G015000 Gossypium raimondii HOM05D000489 ORTHO05D000372 2.8e-06 56.2 147 31.3
TPR.G13623 Trifolium pratense HOM05D000489 ORTHO05D000372 2.8e-06 56.2 147 32.0
arahy.Tifrunner.gnm1.ann1.282MDX Arachis hypogaea HOM05D002060 ORTHO05D000372 3.7e-06 55.8 130 33.1
SEGI_32233 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 3.7e-06 55.8 124 31.5
TAR376G0535 Trochodendron aralioides HOM05D000489 ORTHO05D000372 3.7e-06 55.8 101 32.7
Glyma.20G146800 Glycine max HOM05D000489 ORTHO05D000372 4.8e-06 55.5 162 32.1
Gohir.D02G039800 Gossypium hirsutum HOM05D000489 ORTHO05D000372 4.8e-06 55.5 172 30.2
Psat2g058560 Pisum sativum HOM05D000489 ORTHO05D000372 4.8e-06 55.5 128 32.8
SEGI_17517 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 4.8e-06 55.5 126 30.2
Sopen11g029680 Solanum pennellii HOM05D000489 ORTHO05D000372 4.8e-06 55.5 134 32.1
CsaV3_3G013120 Cucumis sativus L. HOM05D000489 ORTHO05D000372 6.3e-06 55.1 107 31.8
Phvul.006G207500 Phaseolus vulgaris HOM05D000489 ORTHO05D000372 6.3e-06 55.1 132 31.8
SEGI_36919 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 6.3e-06 55.1 94 33.0
TAR628G0745 Trochodendron aralioides HOM05D000489 ORTHO05D000372 6.3e-06 55.1 115 34.8
TAR628G1546 Trochodendron aralioides HOM05D000489 ORTHO05D000372 6.3e-06 55.1 115 34.8
BcaC03g13249 Brassica carinata HOM05D000489 ORTHO05D000372 8.2e-06 54.7 109 32.1
MELO3C006519.2 Cucumis melo HOM05D000489 ORTHO05D000372 8.2e-06 54.7 107 31.8
THA.LOC104819337 Tarenaya hassleriana HOM05D000489 ORTHO05D000372 8.2e-06 54.7 96 31.2
vmacro01816 Vaccinium macrocarpon HOM05D000489 ORTHO05D000372 8.2e-06 54.7 147 29.9


User provided reference genes

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