Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 1.8e-301 1038.5 527 100.0
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 3.2e-226 788.5 514 76.8
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 7.9e-225 783.9 543 73.3
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 7.9e-225 783.9 503 78.1
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 2.0e-212 742.7 510 73.5
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.7e-211 739.6 516 71.5
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 1.4e-205 719.9 502 72.7
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 5.0e-203 711.4 493 72.8
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 2.5e-202 709.1 510 69.8
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 9.4e-202 707.2 517 69.6
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.9e-200 701.8 519 68.6
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 8.8e-200 700.7 544 65.8
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.1e-199 700.3 504 70.0
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.5e-199 699.9 518 68.1
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 2.0e-199 699.5 510 69.8
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.5e-199 699.1 531 67.4
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 3.3e-199 698.7 497 70.0
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 9.7e-199 697.2 483 72.0
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 2.8e-198 695.7 476 70.8
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 1.4e-197 693.3 482 71.2
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.8e-197 693.0 513 67.6
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.4e-197 692.6 476 72.5
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 2.4e-197 692.6 509 68.8
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 5.3e-197 691.4 529 65.8
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 9.1e-197 690.6 478 71.3
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.0e-196 689.5 476 72.1
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 2.6e-196 689.1 513 67.3
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 5.9e-196 688.0 505 68.1
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 7.7e-196 687.6 480 71.9
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 1.7e-195 686.4 486 70.6
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 2.2e-195 686.0 481 69.9
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 3.8e-195 685.3 497 68.6
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 5.0e-195 684.9 520 66.0
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.9e-194 682.9 519 67.6
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 6.1e-193 677.9 497 68.8
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.0e-192 677.2 476 70.0
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 3.0e-192 675.6 484 69.8
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 3.0e-192 675.6 477 71.1
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 3.9e-192 675.2 495 68.7
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 5.1e-192 674.9 504 67.3
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 8.8e-192 674.1 538 63.9
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.5e-191 673.3 478 69.9
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 2.0e-191 672.9 461 71.6
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 4.4e-191 671.8 518 66.6
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 9.7e-191 670.6 504 67.1
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 9.7e-191 670.6 439 75.2
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 1.7e-190 669.8 534 64.2
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 1.7e-190 669.8 490 67.1
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 3.7e-190 668.7 489 67.1
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 4.8e-190 668.3 475 70.1
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.4e-189 666.8 490 67.6
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.1e-189 665.6 500 68.4
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 2.0e-188 662.9 493 66.7
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 2.0e-188 662.9 474 69.4
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 7.7e-188 661.0 519 63.8
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 7.7e-188 661.0 512 65.0
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 1.3e-187 660.2 480 67.5
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.3e-187 660.2 472 69.9
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.7e-187 659.8 487 67.6
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 2.9e-187 659.1 489 65.6
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 8.5e-187 657.5 490 65.5
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 8.5e-187 657.5 473 67.4
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 8.5e-187 657.5 481 66.7
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 8.5e-187 657.5 470 70.0
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.1e-186 657.1 476 67.6
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.1e-186 657.1 476 67.6
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.9e-186 656.4 487 65.3
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 1.9e-186 656.4 519 62.6
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 2.5e-186 656.0 473 66.8
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.5e-186 656.0 468 70.1
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 3.2e-186 655.6 473 66.8
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 9.4e-186 654.1 488 67.8
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 2.1e-185 652.9 475 67.4
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 2.7e-185 652.5 475 67.4
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 8.0e-185 651.0 492 64.8
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 8.0e-185 651.0 492 65.0
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.8e-184 649.8 474 67.5
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 1.8e-184 649.8 539 62.0
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 3.0e-184 649.0 576 60.2
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.1e-183 647.1 510 64.9
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.5e-183 646.7 510 64.9
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 2.6e-183 646.0 477 65.0
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 2.6e-183 646.0 490 65.9
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 5.7e-183 644.8 520 63.3
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 5.7e-183 644.8 505 64.4
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 1.3e-182 643.7 504 66.3
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 1.7e-182 643.3 527 63.0
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.8e-182 642.5 492 66.9
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 4.8e-182 641.7 519 63.0
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.8e-181 639.8 463 69.8
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.4e-181 639.4 470 68.7
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 5.3e-181 638.3 507 63.7
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.2e-180 637.1 510 64.3
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 2.0e-180 636.3 514 63.4
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.2e-179 632.9 492 65.9
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 2.2e-179 632.9 458 68.3
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 8.5e-179 630.9 474 66.0
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 8.5e-179 630.9 474 65.6
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 2.5e-178 629.4 502 63.3
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 1.2e-177 627.1 499 62.1
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.7e-177 625.9 474 65.4
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 3.6e-177 625.5 494 66.0
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.7e-177 625.2 478 64.0
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 4.7e-177 625.2 521 60.3
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 2.3e-176 622.9 532 58.8
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 4.0e-176 622.1 517 62.7
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.7e-174 616.7 522 62.1
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.1e-173 614.0 455 65.9
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-173 614.0 559 58.1
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.5e-172 609.0 510 62.0
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.5e-172 609.0 508 62.2
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 3.5e-172 609.0 310 99.7
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.3e-171 607.1 559 59.6
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 6.5e-171 604.7 648 51.5
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 2.4e-165 586.3 457 66.1
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 4.1e-157 558.9 464 60.6
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 2.4e-149 533.1 479 58.2
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 7.0e-149 531.6 346 76.3
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 6.0e-148 528.5 367 72.5
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.4e-143 512.3 504 57.9
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 7.5e-143 511.5 364 71.4
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 2.1e-137 493.4 391 63.7
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.8e-136 490.3 458 54.1
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 5.4e-133 478.8 362 68.0
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.5e-132 476.1 460 54.6
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 7.3e-130 468.4 467 50.5
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 1.8e-128 463.8 365 66.6
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.0e-127 460.3 517 49.9
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 2.2e-118 430.3 349 61.3
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 1.3e-115 421.0 325 65.5
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.0e-111 407.1 289 70.6
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.9e-109 400.6 305 65.6
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 3.4e-103 379.8 476 45.6
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 2.9e-102 376.7 240 76.2
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 2.3e-99 367.1 278 64.4
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.9e-98 364.0 490 45.3
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 2.3e-91 340.5 216 76.9
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 3.9e-91 339.7 220 76.4
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 3.6e-84 316.6 223 68.6
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 7.9e-84 315.5 213 71.8
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 3.9e-83 313.2 277 59.2
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 3.9e-83 313.2 457 40.5
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.2e-78 297.4 270 58.1
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.4e-77 294.7 241 58.5
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 3.9e-75 286.6 201 65.2
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 6.3e-73 279.3 444 38.5
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.2e-71 275.0 186 70.4
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 1.0e-67 261.9 274 51.1
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 9.7e-66 255.4 175 70.9
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.7e-60 237.3 262 53.8
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 4.7e-60 236.5 485 35.3
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 6.3e-57 226.1 189 60.8
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 2.4e-56 224.2 154 70.1
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 8.6e-46 189.1 125 73.6
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.9e-41 173.3 283 41.0
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 1.6e-39 168.3 82 100.0
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 7.8e-39 166.0 127 63.0
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 8.6e-38 162.5 115 69.6
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.5e-34 151.8 119 61.3
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 4.4e-34 150.2 125 61.6
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.7e-33 148.3 155 51.0
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 9.2e-32 142.5 106 62.3
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 9.2e-32 142.5 305 35.1
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.7e-31 141.0 80 82.5
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.0e-30 139.0 88 75.0
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 2.5e-29 134.4 305 32.8
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 6.2e-28 129.8 76 80.3
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 1.1e-27 129.0 102 65.7
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.9e-25 120.9 77 77.9
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 3.5e-23 114.0 163 42.3
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.9e-21 108.2 62 80.6
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.5e-21 107.8 63 79.4
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 1.2e-20 105.5 93 53.8
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 1.6e-20 105.1 78 53.8
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 4.7e-20 103.6 90 60.0
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 3.1e-19 100.9 55 78.2
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 2.6e-18 97.8 80 61.2
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 2.2e-17 94.7 55 76.4
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 2.4e-16 91.3 65 67.7
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 5.8e-10 70.1 48 68.8
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 1.7e-09 68.6 52 59.6
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.2e-09 68.2 152 36.2
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 8.4e-09 66.2 110 40.0
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 2.4e-08 64.7 51 58.8
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.3e-06 58.2 66 50.0


User provided reference genes

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