Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold138G35334 Striga asiatica HOM05D002407 ORTHO05D002476 0.0e+00 1275.4 693 100.0
SGA_v2.0_scaffold1G00485 Striga asiatica HOM05D002407 ORTHO05D002476 5.1e-123 446.0 748 44.0
MSTRG.21555 Avicennia marina HOM05D002407 ORTHO05D002476 1.2e-58 232.3 472 39.4
SalBow4G0092 Salvia bowleyana HOM05D002407 ORTHO05D002476 1.1e-51 209.1 586 32.8
Migut.D00304 Erythranthe guttata HOM05D002407 ORTHO05D002476 9.8e-50 202.6 471 37.2
MSTRG.18236 Avicennia marina HOM05D002407 ORTHO05D002476 1.9e-48 198.4 426 39.4
unitig_8.g3722 Utricularia gibba HOM05D002407 ORTHO05D002476 1.8e-27 128.6 406 34.0
TAR365G0729 Trochodendron aralioides HOM05D002407 ORTHO05D002476 1.4e-24 119.0 487 28.1
QL12p021604 Quercus lobata HOM05D002407 ORTHO05D002476 1.6e-23 115.5 420 29.5
Atru.chr5.1448 Acer truncatum HOM05D002407 ORTHO05D002476 2.1e-23 115.2 440 28.6
SGA_v2.0_scaffold191G40497 Striga asiatica HOM05D002407 ORTHO05D002476 2.1e-23 115.2 75 82.7
Thecc.01G277700 Theobroma cacao HOM05D002407 ORTHO05D002476 1.9e-21 108.6 449 30.3
COL.COLO4_09085 Corchorus olitorius HOM05D002407 ORTHO05D002476 2.5e-21 108.2 372 30.9
Duzib211G0657 Durio zibethinus HOM05D002407 ORTHO05D002476 7.4e-21 106.7 457 28.7
Duzib133G0624 Durio zibethinus HOM05D002407 ORTHO05D002476 9.6e-21 106.3 478 28.0
Cfa006148 Carpinus fangiana HOM05D002407 ORTHO05D002476 1.1e-19 102.8 476 27.7
BcaB04g20522 Brassica carinata HOM05D002407 ORTHO05D002476 1.4e-19 102.4 431 27.1
TAR362G1005 Trochodendron aralioides HOM05D002407 ORTHO05D002476 2.4e-19 101.7 479 26.5
TWI73G0052 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 5.3e-19 100.5 327 29.1
GSVIVG01001149001 Vitis vinifera HOM05D002407 ORTHO05D002476 1.2e-18 99.4 440 28.0
TWI53G2093 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 1.5e-18 99.0 439 27.6
Haze_00920 Corylus avellana HOM05D002407 ORTHO05D002476 2.6e-18 98.2 468 26.9
Atru.chr4.2501 Acer truncatum HOM05D002407 ORTHO05D002476 3.4e-18 97.8 350 28.0
TAR636G3152 Trochodendron aralioides HOM05D002407 ORTHO05D002476 1.3e-17 95.9 464 28.7
Sabra08G0115000 Salix brachista HOM05D002407 ORTHO05D002476 2.2e-17 95.1 331 26.9
Haze_04701 Corylus avellana HOM05D002407 ORTHO05D002476 2.9e-17 94.7 486 27.4
Gorai.006G237700 Gossypium raimondii HOM05D002407 ORTHO05D002476 2.9e-17 94.7 469 25.8
Gorai.011G169000 Gossypium raimondii HOM05D002407 ORTHO05D002476 2.9e-17 94.7 424 25.7
AT3G22380 Arabidopsis thaliana HOM05D002407 ORTHO05D002476 4.9e-17 94.0 464 26.7
Gohir.A10G117100 Gossypium hirsutum HOM05D002407 ORTHO05D002476 4.9e-17 94.0 424 26.9
COL.COLO4_10231 Corchorus olitorius HOM05D002407 ORTHO05D002476 6.4e-17 93.6 361 27.4
Sp3g20150 Schrenkiella parvula HOM05D002407 ORTHO05D002476 1.1e-16 92.8 408 27.2
A03p42740 Brassica napus HOM05D002407 ORTHO05D002476 1.4e-16 92.4 432 27.3
Gohir.D09G217200 Gossypium hirsutum HOM05D002407 ORTHO05D002476 1.4e-16 92.4 469 25.8
Nn1g02265 Nelumbo nucifera HOM05D002407 ORTHO05D002476 1.9e-16 92.0 319 30.1
Potri.005G210200 Populus trichocarpa HOM05D002407 ORTHO05D002476 1.9e-16 92.0 456 27.4
Gohir.A09G214700 Gossypium hirsutum HOM05D002407 ORTHO05D002476 2.4e-16 91.7 460 26.3
Potri.010G089700 Populus trichocarpa HOM05D002407 ORTHO05D002476 2.4e-16 91.7 352 27.6
TWI09G0219 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 3.2e-16 91.3 443 29.1
Potri.008G151200 Populus trichocarpa HOM05D002407 ORTHO05D002476 4.2e-16 90.9 433 26.6
Aa31LG8G8910 Aethionema arabicum HOM05D002407 ORTHO05D002476 5.5e-16 90.5 468 27.6
BcaC09g49170 Brassica carinata HOM05D002407 ORTHO05D002476 5.5e-16 90.5 444 27.5
Thhalv10019888m.g Eutrema salsugineum HOM05D002407 ORTHO05D002476 5.5e-16 90.5 437 27.2
AL3G36660 Arabidopsis lyrata HOM05D002407 ORTHO05D002476 7.1e-16 90.1 383 30.0
BraA03t13421Z Brassica rapa HOM05D002407 ORTHO05D002476 7.1e-16 90.1 433 27.3
Carub.0005s2985 Capsella rubella HOM05D002407 ORTHO05D002476 7.1e-16 90.1 365 28.8
C01p41910 Brassica napus HOM05D002407 ORTHO05D002476 9.3e-16 89.7 444 27.3
Gohir.D10G151700 Gossypium hirsutum HOM05D002407 ORTHO05D002476 1.6e-15 89.0 402 25.4
Nn4g26275 Nelumbo nucifera HOM05D002407 ORTHO05D002476 1.6e-15 89.0 498 25.1
TAR633G0416 Trochodendron aralioides HOM05D002407 ORTHO05D002476 2.7e-15 88.2 307 29.0
Manes.15G026500 Manihot esculenta HOM05D002407 ORTHO05D002476 3.5e-15 87.8 336 26.2
THA.LOC104822274 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 6.0e-15 87.0 446 26.0
AL7G40870 Arabidopsis lyrata HOM05D002407 ORTHO05D002476 7.9e-15 86.7 369 26.6
Actinidia23483 Actinidia chinensis HOM05D002407 ORTHO05D002476 1.0e-14 86.3 449 28.7
A01p32710 Brassica napus HOM05D002407 ORTHO05D002476 1.0e-14 86.3 390 28.7
Ciclev10018523m.g Citrus clementina HOM05D002407 ORTHO05D002476 1.0e-14 86.3 287 28.9
BcaB06g26339 Brassica carinata HOM05D002407 ORTHO05D002476 1.3e-14 85.9 362 27.6
BolC1t04147H Brassica oleracea HOM05D002407 ORTHO05D002476 1.3e-14 85.9 446 27.1
Duzib138G1894 Durio zibethinus HOM05D002407 ORTHO05D002476 1.3e-14 85.9 450 28.0
Glyma.20G144400 Glycine max HOM05D002407 ORTHO05D002476 1.3e-14 85.9 433 24.9
Sed0021914 Sechium edule HOM05D002407 ORTHO05D002476 1.3e-14 85.9 449 25.8
Carub.0003s2254 Capsella rubella HOM05D002407 ORTHO05D002476 1.8e-14 85.5 281 30.2
Thecc.04G228600 Theobroma cacao HOM05D002407 ORTHO05D002476 1.8e-14 85.5 473 24.1
Sabra02G0042400 Salix brachista HOM05D002407 ORTHO05D002476 2.3e-14 85.1 391 25.1
MELO3C014484.2 Cucumis melo HOM05D002407 ORTHO05D002476 3.0e-14 84.7 469 25.4
Duzib212G0865 Durio zibethinus HOM05D002407 ORTHO05D002476 3.9e-14 84.3 381 26.0
THA.LOC104803022 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 3.9e-14 84.3 470 27.2
BcaB04g19200 Brassica carinata HOM05D002407 ORTHO05D002476 6.7e-14 83.6 369 28.7
BraA01t03399Z Brassica rapa HOM05D002407 ORTHO05D002476 6.7e-14 83.6 399 28.3
Phvul.007G055400 Phaseolus vulgaris HOM05D002407 ORTHO05D002476 6.7e-14 83.6 444 25.7
Lj6C594G25 Lonicera japonica HOM05D002407 ORTHO05D002476 1.1e-13 82.8 433 26.3
BcaC01g03446 Brassica carinata HOM05D002407 ORTHO05D002476 1.5e-13 82.4 389 28.8
BcaC05g28079 Brassica carinata HOM05D002407 ORTHO05D002476 1.5e-13 82.4 400 26.8
C05p41010 Brassica napus HOM05D002407 ORTHO05D002476 1.5e-13 82.4 400 26.8
Duzib151G0448 Durio zibethinus HOM05D002407 ORTHO05D002476 1.5e-13 82.4 445 24.7
C03p52490 Brassica napus HOM05D002407 ORTHO05D002476 1.9e-13 82.0 388 29.6
BolC3t17519H Brassica oleracea HOM05D002407 ORTHO05D002476 1.9e-13 82.0 388 29.6
Sed0008106 Sechium edule HOM05D002407 ORTHO05D002476 1.9e-13 82.0 447 26.2
Potri.002G052300 Populus trichocarpa HOM05D002407 ORTHO05D002476 2.5e-13 81.6 399 24.8
THA.LOC104808535 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 2.5e-13 81.6 433 27.3
SalBow4G2733 Salvia bowleyana HOM05D002407 ORTHO05D002476 3.3e-13 81.3 79 59.5
Carub.0007s2714 Capsella rubella HOM05D002407 ORTHO05D002476 4.3e-13 80.9 439 27.1
ClCG09G007080 Citrullus lanatus HOM05D002407 ORTHO05D002476 5.6e-13 80.5 393 25.4
CARHR098270 Cardamine hirsuta HOM05D002407 ORTHO05D002476 7.4e-13 80.1 290 30.7
Ciclev10004136m.g Citrus clementina HOM05D002407 ORTHO05D002476 7.4e-13 80.1 442 26.0
CsaV3_6G038190 Cucumis sativus L. HOM05D002407 ORTHO05D002476 7.4e-13 80.1 461 24.3
BolC5t32844H Brassica oleracea HOM05D002407 ORTHO05D002476 9.6e-13 79.7 330 27.9
Dinv38434 Davidia involucrata HOM05D002407 ORTHO05D002476 9.6e-13 79.7 485 25.2
Duzib052G1002 Durio zibethinus HOM05D002407 ORTHO05D002476 9.6e-13 79.7 442 26.0
CiPaw.01G164400 Carya illinoinensis HOM05D002407 ORTHO05D002476 1.3e-12 79.3 492 24.8
Sabra10G0053600 Salix brachista HOM05D002407 ORTHO05D002476 1.3e-12 79.3 224 27.2
AL5G46020 Arabidopsis lyrata HOM05D002407 ORTHO05D002476 2.1e-12 78.6 356 27.2
HPP92_027912 Vanilla planifolia HOM05D002407 ORTHO05D002476 2.8e-12 78.2 244 32.0
Aqoxy2G03363 Aquilegia oxysepala HOM05D002407 ORTHO05D002476 3.7e-12 77.8 486 26.1
Prupe.1G011200 Prunus persica HOM05D002407 ORTHO05D002476 3.7e-12 77.8 363 26.7
THA.LOC104802231 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 3.7e-12 77.8 241 29.0
Cc03_g03560 Coffea canephora HOM05D002407 ORTHO05D002476 4.8e-12 77.4 469 24.7
Manes.15G027400 Manihot esculenta HOM05D002407 ORTHO05D002476 4.8e-12 77.4 418 24.9
GSVIVG01017938001 Vitis vinifera HOM05D002407 ORTHO05D002476 6.2e-12 77.0 313 29.4
Actinidia08503 Actinidia chinensis HOM05D002407 ORTHO05D002476 8.1e-12 76.6 453 26.5
Cpa.g.sc58.130 Carica papaya HOM05D002407 ORTHO05D002476 8.1e-12 76.6 460 25.2
PGR004G2462 Punica granatum HOM05D002407 ORTHO05D002476 8.1e-12 76.6 345 25.5
arahy.Tifrunner.gnm1.ann1.GGU5D9 Arachis hypogaea HOM05D002407 ORTHO05D002476 1.1e-11 76.3 430 25.8
MD13G1190800 Malus domestica HOM05D002407 ORTHO05D002476 1.1e-11 76.3 460 25.9
arahy.Tifrunner.gnm1.ann1.C339P9 Arachis hypogaea HOM05D002407 ORTHO05D002476 1.4e-11 75.9 431 26.0
Dinv44512 Davidia involucrata HOM05D002407 ORTHO05D002476 1.4e-11 75.9 368 27.2
VMungo0720G1158 Vigna mungo HOM05D002407 ORTHO05D002476 1.8e-11 75.5 427 23.9
Hma1.2p1_3606F.1_g337000 Hydrangea macrophylla HOM05D002407 ORTHO05D002476 2.4e-11 75.1 482 25.3
MBI04_g44890_MAGBIO Magnolia biondii HOM05D002407 ORTHO05D002476 2.4e-11 75.1 291 28.9
SalBow2G0563 Salvia bowleyana HOM05D002407 ORTHO05D002476 2.4e-11 75.1 426 27.0
A05p26430 Brassica napus HOM05D002407 ORTHO05D002476 4.0e-11 74.3 410 26.6
Sp5g00350 Schrenkiella parvula HOM05D002407 ORTHO05D002476 4.0e-11 74.3 393 27.2
Gorai.008G004200 Gossypium raimondii HOM05D002407 ORTHO05D002476 6.9e-11 73.6 415 28.7
Glyma.10G249300 Glycine max HOM05D002407 ORTHO05D002476 9.0e-11 73.2 437 24.9
Gohir.A12G004800 Gossypium hirsutum HOM05D002407 ORTHO05D002476 9.0e-11 73.2 359 29.5
Gohir.D12G004400 Gossypium hirsutum HOM05D002407 ORTHO05D002476 9.0e-11 73.2 415 28.2
AUR62038630 Chenopodium quinoa HOM05D002407 ORTHO05D002476 1.5e-10 72.4 343 26.8
QL06p003139 Quercus lobata HOM05D002407 ORTHO05D002476 1.5e-10 72.4 354 24.0
Sed0012197 Sechium edule HOM05D002407 ORTHO05D002476 1.5e-10 72.4 372 26.9
BraA04t15742Z Brassica rapa HOM05D002407 ORTHO05D002476 2.0e-10 72.0 344 29.7
BraA05t21516Z Brassica rapa HOM05D002407 ORTHO05D002476 2.6e-10 71.6 333 27.3
Sabra05G0160300 Salix brachista HOM05D002407 ORTHO05D002476 2.6e-10 71.6 294 28.2
PSO210G7189 Papaver somniferum HOM05D002407 ORTHO05D002476 3.4e-10 71.2 444 26.1
CiPaw.02G096000 Carya illinoinensis HOM05D002407 ORTHO05D002476 4.5e-10 70.9 336 25.3
PSO832G2586 Papaver somniferum HOM05D002407 ORTHO05D002476 4.5e-10 70.9 444 25.5
Lj6A599G41 Lonicera japonica HOM05D002407 ORTHO05D002476 5.8e-10 70.5 462 25.3
vmacro15329 Vaccinium macrocarpon HOM05D002407 ORTHO05D002476 5.8e-10 70.5 327 28.1
Actinidia36978 Actinidia chinensis HOM05D002407 ORTHO05D002476 1.0e-09 69.7 328 26.8
ATR0332G080 Amborella trichopoda HOM05D002407 ORTHO05D002476 1.0e-09 69.7 248 29.0
A04p00230 Brassica napus HOM05D002407 ORTHO05D002476 1.0e-09 69.7 344 28.5
CARHR173500 Cardamine hirsuta HOM05D002407 ORTHO05D002476 1.3e-09 69.3 355 28.2
Sopen09g030650 Solanum pennellii HOM05D002407 ORTHO05D002476 1.3e-09 69.3 291 29.9
Nitab4.5_0007048g0010 Nicotiana tabacum HOM05D002407 ORTHO05D002476 1.7e-09 68.9 467 25.9
Oeu025732.3 Olea europaea HOM05D002407 ORTHO05D002476 2.9e-09 68.2 344 27.0
Oeu034964.1 Olea europaea HOM05D002407 ORTHO05D002476 2.9e-09 68.2 380 26.8
Oeu041218.1 Olea europaea HOM05D002407 ORTHO05D002476 2.9e-09 68.2 350 26.9
Solyc09g075830.3 Solanum lycopersicum HOM05D002407 ORTHO05D002476 3.8e-09 67.8 334 29.3
AT3G63180 Arabidopsis thaliana HOM05D002407 ORTHO05D002476 6.5e-09 67.0 362 27.1
Eucgr.H03537 Eucalyptus grandis HOM05D002407 ORTHO05D002476 6.5e-09 67.0 464 25.0
MD16G1191200 Malus domestica HOM05D002407 ORTHO05D002476 6.5e-09 67.0 383 24.3
Medtr1g104710 Medicago truncatula HOM05D002407 ORTHO05D002476 6.5e-09 67.0 364 24.5
CsaV3_7G028090 Cucumis sativus L. HOM05D002407 ORTHO05D002476 8.4e-09 66.6 389 23.9
Ca_10916_v3 Cicer arietinum L. HOM05D002407 ORTHO05D002476 1.1e-08 66.2 288 27.4
DCAR_027191 Daucus carota HOM05D002407 ORTHO05D002476 1.1e-08 66.2 390 25.1
HanXRQChr04g0111791 Helianthus annuus HOM05D002407 ORTHO05D002476 1.1e-08 66.2 335 27.8
HPP92_024476 Vanilla planifolia HOM05D002407 ORTHO05D002476 1.1e-08 66.2 207 31.4
AUR62038105 Chenopodium quinoa HOM05D002407 ORTHO05D002476 1.4e-08 65.9 251 27.1
HPP92_024374 Vanilla planifolia HOM05D002407 ORTHO05D002476 1.4e-08 65.9 207 32.9
Ah.13g073850 Amaranthus hybridus HOM05D002407 ORTHO05D002476 1.9e-08 65.5 382 25.7
MSTRG.4019 Avicennia marina HOM05D002407 ORTHO05D002476 1.9e-08 65.5 378 27.0
BcaC02g10349 Brassica carinata HOM05D002407 ORTHO05D002476 1.9e-08 65.5 474 25.1
Peaxi162Scf00437g00026 Petunia axillaris HOM05D002407 ORTHO05D002476 1.9e-08 65.5 339 26.5
PGSC0003DMG400031808 Solanum tuberosum HOM05D002407 ORTHO05D002476 1.9e-08 65.5 455 25.1
MELO3C015830.2 Cucumis melo HOM05D002407 ORTHO05D002476 2.5e-08 65.1 404 23.3
RcHm_v2.0_Chr4g0416621 Rosa chinensis HOM05D002407 ORTHO05D002476 2.5e-08 65.1 457 28.0
DCAR_027192 Daucus carota HOM05D002407 ORTHO05D002476 3.2e-08 64.7 407 24.1
Psat6g208200 Pisum sativum HOM05D002407 ORTHO05D002476 3.2e-08 64.7 296 26.0
arahy.Tifrunner.gnm1.ann1.Q6BK6L Arachis hypogaea HOM05D002407 ORTHO05D002476 4.2e-08 64.3 377 26.5
Sc25g0004400 Simmondsia chinensis HOM05D002407 ORTHO05D002476 4.2e-08 64.3 382 25.1
Rhsim02G0022900 Rhododendron simsii HOM05D002407 ORTHO05D002476 5.5e-08 63.9 462 25.3
ClCG06G006080 Citrullus lanatus HOM05D002407 ORTHO05D002476 7.1e-08 63.5 501 23.2
MSTRG.21848 Avicennia marina HOM05D002407 ORTHO05D002476 9.3e-08 63.2 451 24.6
FvH4_4g15230 Fragaria vesca HOM05D002407 ORTHO05D002476 9.3e-08 63.2 450 24.7
HanXRQChr04g0111801 Helianthus annuus HOM05D002407 ORTHO05D002476 1.6e-07 62.4 337 24.3
Cpa.g.sc52.41 Carica papaya HOM05D002407 ORTHO05D002476 2.1e-07 62.0 395 23.3
ECA234G2398 Erigeron canadensis HOM05D002407 ORTHO05D002476 2.1e-07 62.0 392 25.3
Lj5g0016334 Lotus japonicus HOM05D002407 ORTHO05D002476 2.7e-07 61.6 435 22.8
Hund12142 Selenicereus undatus HOM05D002407 ORTHO05D002476 2.7e-07 61.6 119 37.0
BolC4t24537H Brassica oleracea HOM05D002407 ORTHO05D002476 3.5e-07 61.2 359 26.5
FAN07G2387 Fragaria x ananassa HOM05D002407 ORTHO05D002476 4.6e-07 60.8 460 25.7
FAN12G3852 Fragaria x ananassa HOM05D002407 ORTHO05D002476 4.6e-07 60.8 458 25.1
TPR.G5532 Trifolium pratense HOM05D002407 ORTHO05D002476 4.6e-07 60.8 223 27.4
CAN.G907.19 Capsicum annuum HOM05D002407 ORTHO05D002476 6.0e-07 60.5 288 29.5
FAN17G1063 Fragaria x ananassa HOM05D002407 ORTHO05D002476 6.0e-07 60.5 452 24.8
HPP92_006103 Vanilla planifolia HOM05D002407 ORTHO05D002476 7.9e-07 60.1 217 30.0
FAN22G1385 Fragaria x ananassa HOM05D002407 ORTHO05D002476 1.0e-06 59.7 494 24.5
arahy.Tifrunner.gnm1.ann1.5R3DYZ Arachis hypogaea HOM05D002407 ORTHO05D002476 1.3e-06 59.3 424 26.4
Aa31LG10G17010 Aethionema arabicum HOM05D002407 ORTHO05D002476 1.8e-06 58.9 390 24.1
Lalb_Chr05g0210931 Lupinus albus HOM05D002407 ORTHO05D002476 1.8e-06 58.9 475 23.4
unitig_748.g8339 Utricularia gibba HOM05D002407 ORTHO05D002476 1.8e-06 58.9 424 25.5
Lalb_Chr09g0319791 Lupinus albus HOM05D002407 ORTHO05D002476 3.0e-06 58.2 452 23.9
Lalb_Chr02g0142731 Lupinus albus HOM05D002407 ORTHO05D002476 3.9e-06 57.8 256 28.1
Prupe.8G240200 Prunus persica HOM05D002407 ORTHO05D002476 5.1e-06 57.4 445 24.9
Actinidia40180 Actinidia chinensis HOM05D002407 ORTHO05D002476 8.7e-06 56.6 240 28.3


User provided reference genes

Program Settings