Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold138G35320 Striga asiatica HOM05D004826 ORTHO05D006367 1.2e-172 609.8 305 100.0
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 2.4e-69 266.5 438 40.4
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 3.7e-65 252.7 431 39.9
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 3.7e-65 252.7 432 39.4
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 3.3e-58 229.6 434 35.5
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 3.3e-58 229.6 426 36.9
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.4e-56 224.2 420 36.4
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 1.4e-56 224.2 441 34.5
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 1.5e-55 220.7 433 34.9
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 9.3e-53 211.5 430 33.7
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 3.5e-52 209.5 434 33.9
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 4.6e-52 209.1 433 33.7
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 6.0e-52 208.8 300 42.7
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 1.0e-51 208.0 425 33.2
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 1.3e-51 207.6 419 34.4
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 1.3e-51 207.6 423 33.3
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 1.8e-51 207.2 452 33.8
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 1.8e-51 207.2 442 32.8
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 2.3e-51 206.8 433 33.7
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 2.3e-51 206.8 428 35.0
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 3.0e-51 206.5 434 33.9
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 3.9e-51 206.1 433 34.2
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 3.9e-51 206.1 437 33.0
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 5.1e-51 205.7 445 33.9
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 5.1e-51 205.7 420 34.3
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 6.7e-51 205.3 422 34.6
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 8.7e-51 204.9 458 33.4
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 8.7e-51 204.9 420 34.3
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 1.1e-50 204.5 413 33.9
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 1.9e-50 203.8 434 33.6
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 1.9e-50 203.8 434 33.4
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 2.5e-50 203.4 434 33.4
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 3.3e-50 203.0 459 33.6
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 5.7e-50 202.2 427 34.9
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 5.7e-50 202.2 429 33.3
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 7.4e-50 201.8 442 33.7
MBI05_g20783_MAGBIO Magnolia biondii HOM05D004826 ORTHO05D006367 1.3e-49 201.1 330 40.9
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 2.1e-49 200.3 431 32.9
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 2.1e-49 200.3 461 33.0
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 2.8e-49 199.9 436 34.2
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 2.8e-49 199.9 435 33.6
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 2.8e-49 199.9 444 32.7
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 3.7e-49 199.5 438 34.9
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 3.7e-49 199.5 435 34.9
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 4.8e-49 199.1 422 34.4
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 6.3e-49 198.7 424 33.0
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 6.3e-49 198.7 330 37.9
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.1e-48 198.0 434 34.3
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 1.4e-48 197.6 428 32.5
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 1.8e-48 197.2 426 32.2
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 1.8e-48 197.2 433 34.4
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 1.8e-48 197.2 433 33.0
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 3.1e-48 196.4 433 33.5
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 3.1e-48 196.4 324 39.2
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 4.1e-48 196.1 436 33.5
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 4.1e-48 196.1 436 33.5
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 4.1e-48 196.1 431 33.4
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 5.3e-48 195.7 311 38.9
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 5.3e-48 195.7 433 34.4
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 6.9e-48 195.3 416 34.1
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 6.9e-48 195.3 412 35.0
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 1.2e-47 194.5 423 32.4
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 1.5e-47 194.1 413 34.1
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 1.5e-47 194.1 436 32.6
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 3.4e-47 193.0 354 36.7
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 4.5e-47 192.6 355 37.2
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 4.5e-47 192.6 412 33.7
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 5.9e-47 192.2 277 40.4
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.3e-46 191.0 433 33.3
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.7e-46 190.7 435 32.9
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 2.2e-46 190.3 432 31.7
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 2.9e-46 189.9 432 31.5
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 2.9e-46 189.9 422 34.1
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 5.0e-46 189.1 358 35.5
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 6.5e-46 188.7 415 33.3
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 1.1e-45 188.0 423 31.9
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 1.4e-45 187.6 426 34.3
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 1.9e-45 187.2 416 32.5
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 3.2e-45 186.4 431 31.8
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 4.2e-45 186.0 440 31.4
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 4.2e-45 186.0 426 32.4
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 4.2e-45 186.0 469 30.5
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 7.2e-45 185.3 418 32.8
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 7.2e-45 185.3 419 32.7
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 2.1e-44 183.7 382 34.6
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 2.7e-44 183.3 426 31.7
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 2.7e-44 183.3 405 32.6
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 6.1e-44 182.2 431 31.3
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 1.5e-42 177.6 283 38.2
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 1.9e-42 177.2 387 33.3
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 7.4e-42 175.3 460 30.2
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.7e-41 174.1 436 30.7
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.4e-40 171.0 377 32.4
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 2.4e-40 170.2 251 39.8
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 3.1e-40 169.9 473 29.2
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 6.9e-40 168.7 261 39.1
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 4.5e-39 166.0 292 35.3
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 1.3e-38 164.5 383 31.1
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 2.2e-38 163.7 409 31.1
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 1.1e-37 161.4 311 35.0
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 3.2e-37 159.8 294 37.8
RcHm_v2.0_Chr6g0290571 Rosa chinensis HOM05D004826 ORTHO05D006367 5.5e-37 159.1 149 53.7
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 2.7e-36 156.8 404 31.4
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 2.3e-35 153.7 281 35.6
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 3.0e-35 153.3 292 34.2
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 1.5e-34 151.0 258 37.2
Nitab4.5_0005696g0030 Nicotiana tabacum HOM05D004826 ORTHO05D006367 1.7e-30 137.5 241 37.3
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 1.7e-30 137.5 306 32.4
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 1.9e-29 134.0 333 30.9
SHI16389 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-28 131.3 112 54.5
BcaNung01308 Brassica carinata HOM05D004826 ORTHO05D006367 1.6e-28 131.0 162 42.6
BcaNung01310 Brassica carinata HOM05D004826 ORTHO05D006367 1.6e-28 131.0 203 39.4
BolC1t00008H Brassica oleracea HOM05D004826 ORTHO05D006367 1.6e-28 131.0 203 39.4
C01p00020 Brassica napus HOM05D004826 ORTHO05D006367 6.1e-28 129.0 203 38.9
Pp3c3_10370 Physcomitrium patens HOM05D004826 ORTHO05D006367 2.6e-26 123.6 322 31.4
CSS0007905 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 9.1e-24 115.2 141 44.0
AagrBONN_evm.TU.Sc2ySwM_228.3229 Anthoceros agrestis HOM05D011762 ORTHO05D014803 1.2e-23 114.8 129 43.4
CSS0022346 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 2.0e-23 114.0 81 65.4
Mapoly0048s0007 Marchantia polymorpha HOM05D004826 ORTHO05D006367 7.2e-21 105.5 129 41.1
BolC1t00011H Brassica oleracea HOM05D004826 ORTHO05D006367 1.2e-20 104.8 156 42.9
ATR0665G626 Amborella trichopoda HOM05D004826 ORTHO05D006367 8.0e-20 102.1 98 50.0
Nitab4.5_0025955g0010 Nicotiana tabacum HOM05D004826 ORTHO05D006367 3.0e-19 100.1 160 41.2
SGA_v2.0_scaffold1G00502 Striga asiatica HOM05D004826 ORTHO05D006367 1.2e-18 98.2 106 56.6
CBR_g19915 Chara braunii HOM05D004826 ORTHO05D006367 2.0e-18 97.4 115 40.0
Lj1C48G4 Lonicera japonica HOM05D000001 ORTHO05D000003 5.5e-13 79.3 83 47.0
TAR362G0739 Trochodendron aralioides HOM05D004826 ORTHO05D006367 7.2e-13 79.0 158 32.9
BcaC05g24557 Brassica carinata HOM05D001359 ORTHO05D001200 3.6e-12 76.6 114 42.1
Cre08.g374800 Chlamydomonas reinhardtii HOM05D004826 ORTHO05D006367 1.8e-11 74.3 97 34.0
Actinidia21127 Actinidia chinensis HOM05D004826 ORTHO05D006367 2.3e-11 73.9 387 25.6
arahy.Tifrunner.gnm1.ann1.QRYF2V Arachis hypogaea HOM05D004826 ORTHO05D006367 8.8e-11 72.0 222 30.2
CDE07G1977 Ceratophyllum demersum HOM05D003852 ORTHO05D003095 2.8e-09 67.0 69 58.0
BolC5t28951H Brassica oleracea HOM05D004826 ORTHO05D006367 3.7e-09 66.6 98 38.8
Hund02828 Selenicereus undatus HOM05D004826 ORTHO05D006367 2.4e-08 63.9 107 38.3
Hund27937 Selenicereus undatus HOM05D004826 ORTHO05D006367 2.4e-08 63.9 107 38.3
CiPaw.07G089700 Carya illinoinensis HOM05D004826 ORTHO05D006367 7.7e-07 58.9 104 32.7
PRCOL_00006778 Prasinoderma coloniale HOM05D004826 ORTHO05D006367 6.5e-06 55.8 72 40.3


User provided reference genes

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