Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 3.5e-166 588.2 294 100.0
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 3.6e-126 455.3 294 80.6
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 2.8e-123 445.7 294 78.9
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.7e-120 436.4 294 75.9
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 1.9e-119 433.0 294 75.9
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 1.6e-118 429.9 294 74.1
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 2.7e-118 429.1 294 74.8
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 6.1e-118 427.9 294 75.2
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.0e-117 425.2 294 74.8
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 6.8e-117 424.5 294 74.5
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 8.8e-117 424.1 294 74.5
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 8.8e-117 424.1 293 74.4
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 1.2e-116 423.7 294 74.8
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 1.5e-116 423.3 294 74.5
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 1.5e-116 423.3 293 74.1
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 1.5e-116 423.3 294 75.2
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.5e-116 423.3 294 74.1
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 2.0e-116 422.9 294 74.1
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 2.6e-116 422.5 294 74.8
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 3.4e-116 422.2 294 74.1
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 4.4e-116 421.8 295 73.6
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 4.4e-116 421.8 291 74.6
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 5.7e-116 421.4 294 74.1
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 5.7e-116 421.4 294 74.8
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 9.8e-116 420.6 294 74.1
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 2.2e-115 419.5 294 74.1
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 2.8e-115 419.1 296 74.0
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 2.8e-115 419.1 294 73.8
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 4.8e-115 418.3 295 73.9
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 6.3e-115 417.9 295 74.2
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 8.3e-115 417.5 294 74.5
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 1.4e-114 416.8 294 73.8
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 1.8e-114 416.4 295 74.2
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 3.1e-114 415.6 323 68.7
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 7.0e-114 414.5 294 73.1
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 7.0e-114 414.5 294 73.5
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 9.1e-114 414.1 294 73.5
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 1.2e-113 413.7 294 71.8
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 1.2e-113 413.7 295 72.5
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 1.6e-113 413.3 295 73.9
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.6e-113 413.3 294 72.4
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 2.0e-113 412.9 292 72.6
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 2.7e-113 412.5 294 73.8
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 3.5e-113 412.1 294 73.8
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 3.5e-113 412.1 294 72.4
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 3.5e-113 412.1 294 73.1
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 5.9e-113 411.4 294 73.5
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 7.7e-113 411.0 294 73.5
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 7.7e-113 411.0 294 72.1
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 1.3e-112 410.2 293 71.3
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 1.3e-112 410.2 292 71.9
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 1.7e-112 409.8 294 73.5
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 2.2e-112 409.5 292 73.6
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 2.2e-112 409.5 295 72.9
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 2.2e-112 409.5 295 73.2
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 3.8e-112 408.7 295 73.2
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 5.0e-112 408.3 295 72.5
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 6.5e-112 407.9 294 72.8
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 6.5e-112 407.9 294 72.4
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 6.5e-112 407.9 294 71.8
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 8.5e-112 407.5 295 72.5
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 8.5e-112 407.5 294 73.5
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 1.1e-111 407.1 294 70.4
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 1.1e-111 407.1 292 73.3
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 1.1e-111 407.1 292 73.3
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 1.9e-111 406.4 292 72.9
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 1.9e-111 406.4 294 72.1
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 2.5e-111 406.0 295 72.2
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 3.2e-111 405.6 292 72.6
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 4.2e-111 405.2 294 72.1
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 5.5e-111 404.8 294 71.4
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 5.5e-111 404.8 291 71.5
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 9.4e-111 404.1 295 71.2
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 9.4e-111 404.1 295 71.2
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 9.4e-111 404.1 294 72.1
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 1.6e-110 403.3 294 71.4
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 2.1e-110 402.9 294 71.1
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 2.7e-110 402.5 294 72.1
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 3.6e-110 402.1 291 72.2
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 6.1e-110 401.4 294 72.1
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 6.1e-110 401.4 294 71.8
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 8.0e-110 401.0 294 70.7
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.0e-109 400.6 294 72.4
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 1.4e-109 400.2 292 72.3
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 1.8e-109 399.8 294 71.1
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 1.8e-109 399.8 294 70.4
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 3.0e-109 399.1 294 72.1
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 3.0e-109 399.1 292 72.3
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 3.0e-109 399.1 294 70.4
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 6.8e-109 397.9 294 70.4
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 8.8e-109 397.5 291 70.4
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 8.8e-109 397.5 294 71.1
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 3.4e-108 395.6 291 72.2
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 3.4e-108 395.6 291 72.2
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 4.4e-108 395.2 294 70.4
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 4.4e-108 395.2 294 69.4
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 5.7e-108 394.8 294 69.7
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 5.7e-108 394.8 294 70.1
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 7.5e-108 394.4 294 70.1
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 9.8e-108 394.0 295 70.5
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.8e-107 392.5 294 69.7
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 2.8e-107 392.5 294 68.7
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 3.7e-107 392.1 294 69.7
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 4.1e-106 388.7 296 68.2
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 7.0e-106 387.9 296 67.9
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 2.0e-105 386.3 296 68.6
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.0e-105 386.3 294 68.7
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 6.6e-104 381.3 322 64.3
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 1.1e-103 380.6 294 69.4
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 1.5e-103 380.2 294 69.0
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 6.1e-102 374.8 289 65.7
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 1.5e-100 370.2 279 67.0
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.0e-100 369.8 279 70.6
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 7.0e-98 361.3 279 68.5
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 3.9e-96 355.5 256 71.5
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 9.5e-95 350.9 294 64.3
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 5.2e-93 345.1 277 63.5
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 1.5e-92 343.6 289 61.2
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 2.6e-92 342.8 321 61.7
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 7.5e-92 341.3 298 63.8
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 2.2e-91 339.7 268 64.6
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 3.7e-91 339.0 290 62.4
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 3.2e-90 335.9 289 60.6
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 5.4e-90 335.1 277 62.5
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 7.0e-90 334.7 294 63.9
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 1.7e-88 330.1 216 75.9
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.4e-85 320.5 271 62.7
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 2.3e-85 319.7 162 94.4
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 1.5e-84 317.0 279 59.1
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.1e-82 310.8 271 63.1
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 1.4e-82 310.5 279 57.7
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 1.2e-81 307.4 160 91.9
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 3.5e-81 305.8 159 89.9
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.0e-80 304.3 279 62.4
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 4.3e-79 298.9 289 58.8
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 6.8e-77 291.6 159 90.6
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 1.9e-71 273.5 287 49.8
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 4.0e-69 265.8 226 63.3
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 2.4e-66 256.5 324 51.2
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 7.8e-65 251.5 168 76.8
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 1.3e-62 244.2 210 64.3
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 3.6e-62 242.7 271 44.6
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 1.6e-57 227.3 135 80.7
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 9.6e-55 218.0 294 48.0
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 1.5e-47 194.1 121 78.5
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 1.6e-46 190.7 132 73.5
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 9.0e-45 184.9 132 72.7
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 9.0e-45 184.9 162 63.0
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 3.4e-44 183.0 100 88.0
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 6.7e-40 168.7 272 34.9
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 8.2e-38 161.8 83 88.0
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 1.1e-37 161.4 116 74.1
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 4.1e-37 159.5 84 85.7
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.5e-36 157.5 89 83.1
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 4.5e-36 156.0 83 86.7
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.2e-34 149.8 89 79.8
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 7.2e-34 148.7 89 78.7
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.0e-32 144.8 75 88.0
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.0e-32 144.8 89 77.5
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 7.4e-31 138.7 81 81.5
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.3e-30 137.9 81 81.5
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 2.8e-30 136.7 206 39.8
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 1.4e-29 134.4 107 67.3
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.1e-29 132.9 75 82.7
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.1e-29 132.9 75 82.7
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.1e-29 132.9 75 82.7
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.1e-29 132.9 75 82.7
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 5.3e-29 132.5 81 77.8
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.5e-28 131.0 75 81.3
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 5.0e-27 125.9 75 78.7
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 9.4e-26 121.7 71 80.3
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 9.4e-26 121.7 76 77.6
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 1.5e-23 114.4 77 76.6
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 8.2e-22 108.6 71 78.9
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 1.1e-21 108.2 110 58.2
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 2.9e-11 73.6 58 65.5
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 6.3e-06 55.8 44 59.1


User provided reference genes

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