Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 0.0e+00 1189.5 605 100.0
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 3.2e-262 908.3 602 78.4
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 9.3e-238 827.0 610 71.6
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 3.7e-234 815.1 608 70.6
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 3.7e-226 788.5 620 67.3
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 7.6e-224 780.8 554 72.6
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 1.8e-212 743.0 622 63.7
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 4.1e-209 731.9 612 64.4
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.0e-208 729.6 638 61.3
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 4.5e-208 728.4 613 63.0
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 1.2e-205 720.3 629 61.2
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 2.1e-205 719.5 609 63.1
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.6e-205 718.8 612 61.4
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 1.0e-204 717.2 609 61.9
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 1.0e-204 717.2 610 61.0
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.8e-204 716.5 605 63.5
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.1e-203 713.8 621 61.2
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 5.7e-203 711.4 605 62.3
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 2.2e-202 709.5 611 62.5
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 2.2e-202 709.5 607 61.9
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 4.8e-202 708.4 607 61.8
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 3.1e-201 705.7 606 62.5
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 9.1e-201 704.1 598 62.0
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.2e-200 703.7 625 60.2
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.5e-200 702.2 635 60.3
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 4.5e-200 701.8 606 61.4
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 7.7e-200 701.0 596 62.9
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 2.9e-199 699.1 595 62.2
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 3.8e-199 698.7 602 62.6
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.1e-198 697.2 593 61.7
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 1.5e-198 696.8 597 62.0
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 2.5e-198 696.0 611 61.9
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 3.2e-198 695.7 602 60.5
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 3.2e-198 695.7 607 62.6
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 3.2e-198 695.7 609 61.7
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.7e-197 692.6 610 61.1
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 1.0e-196 690.6 615 61.0
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 1.4e-196 690.3 603 61.4
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 1.4e-196 690.3 609 60.4
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 1.4e-196 690.3 610 61.1
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.4e-196 690.3 610 61.1
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.8e-196 689.9 595 61.0
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 2.3e-196 689.5 596 61.4
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 2.3e-196 689.5 607 61.3
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 5.2e-196 688.3 596 61.2
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 5.2e-196 688.3 609 60.3
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 6.7e-196 688.0 608 61.2
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 6.7e-196 688.0 597 59.5
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 2.6e-195 686.0 607 59.8
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 4.4e-195 685.3 608 60.7
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 1.7e-194 683.3 594 60.6
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.8e-194 682.6 500 70.4
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 9.1e-193 677.6 593 60.7
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 5.9e-192 674.9 603 59.9
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 7.7e-192 674.5 596 59.2
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 1.3e-191 673.7 586 60.9
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 1.7e-191 673.3 614 59.0
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.7e-191 673.3 610 58.7
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 3.8e-191 672.2 603 59.4
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 5.0e-191 671.8 609 59.4
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 8.5e-191 671.0 620 57.1
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 1.1e-190 670.6 599 58.9
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 1.9e-190 669.8 599 60.8
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 2.5e-190 669.5 599 57.6
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 4.2e-190 668.7 599 59.3
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 5.5e-190 668.3 607 59.1
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 7.2e-190 667.9 586 59.6
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 9.4e-190 667.5 494 68.4
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 9.4e-190 667.5 601 59.2
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 9.4e-190 667.5 587 60.1
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.2e-189 667.2 590 61.4
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.1e-189 666.4 600 58.8
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 2.7e-189 666.0 653 55.4
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 3.6e-189 665.6 591 60.2
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 1.0e-188 664.1 613 59.1
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 6.8e-188 661.4 610 59.2
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 6.8e-188 661.4 638 56.4
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 1.5e-187 660.2 638 57.7
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 2.6e-187 659.4 509 68.2
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 4.4e-187 658.7 603 58.9
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 4.8e-186 655.2 610 58.7
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 4.8e-186 655.2 588 58.3
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 8.3e-186 654.4 506 68.6
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 1.1e-185 654.1 674 53.4
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 1.1e-185 654.1 605 58.8
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 3.1e-185 652.5 610 58.0
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 2.0e-184 649.8 602 59.5
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 5.9e-184 648.3 605 58.0
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 2.9e-183 646.0 583 58.8
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 3.8e-183 645.6 566 60.8
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 5.0e-183 645.2 603 57.9
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 5.0e-183 645.2 564 61.5
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.5e-182 643.7 596 57.6
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 1.5e-182 643.7 609 57.3
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.8e-180 636.7 602 56.6
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 1.2e-179 634.0 588 58.8
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 1.7e-178 630.2 591 58.0
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 1.7e-178 630.2 662 53.0
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 2.8e-178 629.4 662 53.0
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 4.9e-178 628.6 606 57.1
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 4.9e-178 628.6 616 57.5
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 1.1e-177 627.5 607 57.0
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 1.1e-177 627.5 588 58.3
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 1.8e-177 626.7 607 57.0
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 7.0e-177 624.8 609 56.7
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.2e-177 624.4 597 56.8
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 1.6e-176 623.6 606 56.8
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 2.0e-176 623.2 606 56.9
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 3.5e-176 622.5 618 56.0
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 4.5e-176 622.1 592 57.1
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 4.5e-176 622.1 618 56.8
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 5.0e-175 618.6 609 55.7
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.5e-174 617.1 612 55.6
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 3.3e-174 615.9 611 55.8
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 7.3e-174 614.8 603 57.4
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 6.1e-173 611.7 591 56.9
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 1.4e-172 610.5 594 55.9
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 5.2e-172 608.6 606 56.1
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 3.4e-171 605.9 614 56.0
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.7e-170 602.4 637 54.0
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.5e-168 595.9 584 56.7
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.7e-167 593.6 479 63.3
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.0e-164 582.4 619 53.5
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 5.2e-164 582.0 582 54.8
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 6.4e-162 575.1 485 63.7
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 9.2e-161 571.2 560 56.1
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 6.6e-159 565.1 548 56.0
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 2.8e-157 559.7 605 52.7
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.8e-157 559.7 588 53.6
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 6.2e-157 558.5 573 54.3
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 1.3e-154 550.8 552 54.3
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.7e-154 550.4 505 61.2
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 4.6e-152 542.3 549 53.6
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 4.0e-148 529.3 579 53.4
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.9e-145 520.4 637 48.0
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.7e-143 513.8 569 50.8
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 5.2e-140 502.3 603 48.9
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 1.2e-139 501.1 375 67.5
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.5e-134 484.2 394 65.2
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 1.2e-131 474.6 598 46.5
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 6.4e-130 468.8 587 45.8
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 5.4e-129 465.7 458 55.9
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 3.5e-128 463.0 348 66.7
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 4.5e-115 419.5 318 70.1
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 5.7e-110 402.5 403 52.6
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 5.1e-103 379.4 644 37.7
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 1.8e-95 354.4 363 54.5
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.1e-94 351.7 345 55.9
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 9.1e-68 262.3 245 58.0
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 1.2e-67 261.9 163 82.2
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.2e-61 241.1 274 52.9
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 9.2e-60 235.7 231 58.4
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 7.8e-43 179.5 139 68.3
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 1.7e-42 178.3 394 32.2
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 6.4e-37 159.8 476 24.8
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 5.4e-36 156.8 550 25.5
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 3.6e-32 144.1 165 53.9
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 1.4e-23 115.5 70 70.0
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 1.4e-23 115.5 110 53.6
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 6.9e-23 113.2 86 61.6
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 2.6e-22 111.3 118 50.0
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 6.6e-18 96.7 90 64.4
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.3e-16 92.4 72 63.9
Oeu010133.1 Olea europaea HOM05D010114 ORTHO05D000601 1.8e-15 88.6 61 65.6
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 4.0e-15 87.4 83 56.6
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 4.0e-15 87.4 62 69.4
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.4e-14 84.3 198 32.8
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 5.4e-12 77.0 103 45.6
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 9.3e-12 76.3 115 43.5
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 1.1e-07 62.8 252 30.2
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 2.4e-07 61.6 35 82.9
unitig_899.g15441 Utricularia gibba HOM05D001818 ORTHO05D001780 4.0e-07 60.8 273 26.0
VMungo0331G0655 Vigna mungo HOM05D001219 ORTHO05D001017 6.9e-07 60.1 317 26.5
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 9.0e-07 59.7 36 80.6
Ca_07189_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 2.0e-06 58.5 247 25.1
AUR62026403 Chenopodium quinoa HOM05D012008 ORTHO05D014086 5.8e-06 57.0 58 55.2
Ca_06859_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 5.8e-06 57.0 333 22.8
Hma1.2p1_0172F.1_g076230 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 9.9e-06 56.2 35 74.3


User provided reference genes

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