Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 2720.7 1382 100.0
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1623.2 1413 62.6
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1411.4 1483 54.7
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1355.9 1436 53.3
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1353.2 1447 52.9
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1317.8 1437 51.8
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1309.3 1436 52.4
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1302.0 1475 50.6
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1300.4 1428 52.0
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1295.8 1440 52.2
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1289.2 1442 51.3
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1280.4 1426 51.7
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1278.5 1537 49.8
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1278.1 1457 49.6
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1273.8 1427 51.2
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1268.1 1428 51.0
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1260.0 1427 50.0
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1253.0 1429 50.7
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1250.0 1450 50.1
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1248.8 1421 50.7
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1248.0 1427 51.0
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1238.0 1433 50.1
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1236.1 1399 50.6
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1234.9 1419 50.5
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1228.4 1401 50.0
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1216.8 1460 48.6
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1215.7 1435 48.4
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1215.7 1427 50.1
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1208.0 1504 47.9
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1206.4 1427 49.1
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1201.4 1560 46.1
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 0.0e+00 1191.8 1424 49.0
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1191.4 1436 48.3
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1181.8 1422 49.4
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1180.2 1416 48.1
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1177.2 1473 48.7
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1173.7 1457 48.1
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1157.1 1419 47.4
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1149.4 1430 47.0
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1148.7 1391 48.2
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1147.1 1408 47.4
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1143.6 1433 47.0
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1142.5 1409 47.1
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1140.9 1408 47.6
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 0.0e+00 1132.5 1352 49.3
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1127.9 1425 47.2
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 1126.7 1467 45.7
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1125.9 1446 46.1
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1124.4 1431 46.4
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1120.1 1418 47.0
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1118.6 1420 46.0
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1117.1 1415 47.3
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1116.3 1409 47.1
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1113.2 1433 46.1
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1113.2 1432 46.8
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1108.2 1433 45.7
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1107.0 1416 45.5
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1105.5 1409 47.2
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1105.1 1427 47.0
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 1104.7 1427 46.0
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1096.3 1425 45.8
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1095.9 1427 46.8
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1093.6 1410 45.1
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 1080.1 1470 45.7
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1077.4 1423 46.2
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 0.0e+00 1077.0 1431 44.8
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 3.2e-310 1068.9 1406 44.5
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 5.5e-310 1068.1 1419 46.4
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 2.7e-309 1065.8 1426 45.7
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 3.9e-308 1062.0 1412 45.2
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 9.7e-307 1057.4 1405 45.1
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 9.7e-307 1057.4 1425 44.7
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 1.2e-304 1050.4 1322 47.5
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 7.7e-304 1047.7 1436 44.7
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 1.6e-301 1040.0 1436 44.4
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 3.0e-300 1035.8 1413 44.3
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 5.7e-299 1031.6 1422 43.3
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 2.2e-298 1029.6 1421 44.0
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 2.2e-298 1029.6 1421 44.0
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 2.2e-298 1029.6 1421 44.0
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 2.2e-298 1029.6 1424 43.9
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 1.8e-297 1026.5 1419 43.8
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 3.1e-297 1025.8 1421 43.8
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 3.1e-297 1025.8 1452 44.1
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 5.3e-297 1025.0 1413 43.5
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.5e-291 1006.9 1452 43.9
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 5.3e-289 998.4 1447 43.5
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 5.3e-289 998.4 1428 43.0
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 7.0e-289 998.0 1133 51.6
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 7.2e-286 988.0 1421 44.8
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 2.0e-283 979.9 1427 42.3
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 8.3e-274 948.0 754 67.1
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 8.5e-271 937.9 1194 46.0
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 1.3e-258 897.5 1420 40.3
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 2.8e-245 853.2 1365 41.2
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 4.3e-238 829.3 921 52.0
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 1.6e-221 774.2 871 52.4
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 1.3e-202 711.4 668 58.8
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 1.2e-195 688.3 975 44.1
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 5.7e-182 642.9 727 51.9
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 5.0e-178 629.8 765 48.5
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 2.5e-177 627.5 649 55.9
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 8.5e-170 602.4 488 63.7
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 5.2e-167 593.2 493 63.1
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 6.8e-159 566.2 857 42.1
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 5.9e-155 553.1 956 39.7
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 6.5e-154 549.7 771 43.2
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 8.3e-149 532.7 1352 31.4
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 1.9e-137 495.0 364 69.5
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.6e-134 484.6 652 42.6
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 3.3e-129 467.6 1395 27.9
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 2.6e-126 458.0 552 48.0
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 5.8e-126 456.8 1198 31.7
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.3e-125 455.7 376 63.0
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 2.3e-122 444.9 369 63.1
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 1.4e-119 435.6 478 52.5
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 7.6e-118 429.9 1246 29.0
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 4.9e-101 374.0 426 45.5
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 4.8e-88 330.9 449 42.3
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 8.5e-77 293.5 700 30.4
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.3e-74 286.2 272 53.7
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 8.8e-74 283.5 329 45.0
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.6e-67 262.7 347 45.8
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 4.5e-62 244.6 309 45.0
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 3.0e-50 205.3 359 37.9
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 5.0e-45 188.0 180 56.7
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 1.6e-43 183.0 377 35.0
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 5.4e-39 167.9 304 35.9
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 5.4e-39 167.9 279 38.4
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 9.1e-39 167.2 121 67.8
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 5.7e-33 147.9 200 49.0
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 5.4e-31 141.4 519 25.8
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 4.0e-26 125.2 417 27.6
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 4.9e-24 118.2 316 31.0
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 2.5e-20 105.9 86 59.3
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.1e-19 102.8 226 35.0
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 5.2e-18 98.2 146 41.8
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 6.8e-18 97.8 213 31.0
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 1.1e-15 90.5 139 41.0
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.5e-12 80.1 91 47.3
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 4.3e-12 78.6 134 33.6
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 6.2e-11 74.7 87 47.1
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 8.1e-11 74.3 277 26.4
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 2.9e-08 65.9 439 20.3
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 2.1e-06 59.7 65 53.8
MBI19_g06116_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D036548 3.5e-06 58.9 39 71.8


User provided reference genes

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