Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 9.5e-171 603.6 345 100.0
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 7.4e-131 471.1 394 72.8
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 6.3e-130 468.0 319 86.2
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 4.5e-128 461.8 345 77.1
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 7.6e-128 461.1 345 70.7
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 1.3e-127 460.3 345 72.5
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.7e-127 459.9 345 71.9
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 8.5e-127 457.6 345 70.4
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 3.2e-126 455.7 345 70.4
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 1.2e-125 453.8 345 71.0
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 2.1e-125 453.0 345 70.4
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.1e-125 453.0 345 70.1
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 1.0e-124 450.7 345 69.3
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 1.3e-124 450.3 345 75.1
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 3.0e-124 449.1 345 69.9
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 3.9e-124 448.7 344 70.1
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 5.1e-124 448.4 345 69.6
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 8.7e-124 447.6 345 71.3
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 3.3e-123 445.7 345 69.9
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 9.7e-123 444.1 345 69.0
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.3e-122 443.7 345 69.3
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 1.6e-122 443.4 335 70.7
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 2.8e-122 442.6 346 69.7
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 6.3e-122 441.4 345 68.1
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.8e-121 439.9 345 68.4
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 4.1e-121 438.7 345 67.0
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 5.3e-121 438.3 345 69.0
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 9.1e-121 437.6 345 67.2
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 2.6e-120 436.0 340 69.4
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 3.4e-120 435.6 335 69.6
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 5.9e-120 434.9 345 67.5
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 2.2e-119 433.0 345 67.0
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.1e-118 430.6 345 67.5
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.1e-118 430.6 345 67.8
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.4e-118 430.3 345 68.4
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.4e-118 430.3 345 68.4
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 1.9e-118 429.9 345 67.8
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 1.9e-118 429.9 345 67.5
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 2.5e-118 429.5 337 67.4
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 9.4e-118 427.6 347 67.7
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 9.4e-118 427.6 345 72.8
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.2e-117 427.2 345 66.4
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.2e-117 427.2 345 67.8
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.2e-117 427.2 345 72.8
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.2e-117 427.2 345 69.3
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.6e-117 426.8 345 67.8
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 2.1e-117 426.4 345 67.0
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.7e-117 426.0 345 67.8
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 2.7e-117 426.0 345 66.4
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.5e-115 420.2 345 68.1
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 2.0e-115 419.9 345 67.2
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 3.3e-115 419.1 343 65.9
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 5.7e-115 418.3 345 71.9
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 5.7e-115 418.3 345 66.1
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 5.7e-115 418.3 345 64.6
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 7.4e-115 417.9 317 71.9
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 1.7e-114 416.8 345 65.5
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 2.8e-114 416.0 345 68.7
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.7e-114 415.6 315 69.8
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 8.2e-114 414.5 345 65.5
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.4e-113 413.7 374 63.9
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.8e-113 413.3 341 70.7
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 2.4e-113 412.9 345 65.5
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 1.5e-112 410.2 337 65.6
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 3.8e-111 405.6 345 69.3
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.4e-110 403.7 345 64.9
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.2e-110 402.5 345 69.0
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 3.2e-110 402.5 334 65.0
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 3.6e-109 399.1 345 69.0
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 3.6e-109 399.1 345 68.7
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.7e-109 398.7 345 69.0
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 6.1e-109 398.3 337 70.0
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 6.1e-109 398.3 345 69.0
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 1.8e-108 396.7 331 65.3
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 1.8e-108 396.7 334 64.4
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 1.5e-107 393.7 325 65.5
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 4.8e-106 388.7 345 67.5
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 8.2e-106 387.9 345 67.2
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.4e-105 387.1 339 66.1
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 9.1e-105 384.4 345 67.0
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.6e-104 382.9 268 75.0
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 7.2e-102 374.8 345 66.4
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.3e-100 369.8 345 65.8
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.3e-100 369.8 345 65.8
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.5e-99 367.1 346 60.7
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 2.6e-99 366.3 345 63.8
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 2.6e-99 366.3 345 60.0
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.7e-98 363.6 338 64.8
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.2e-96 357.5 345 59.1
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 2.5e-94 349.7 345 62.9
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 4.2e-94 349.0 345 62.9
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 4.2e-94 349.0 346 58.1
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 4.2e-94 349.0 345 64.9
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 2.7e-93 346.3 345 62.6
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 3.6e-93 345.9 331 58.3
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 4.7e-93 345.5 345 60.9
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 8.0e-93 344.7 268 67.5
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 8.8e-92 341.3 373 54.7
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 3.4e-91 339.3 268 66.0
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 5.7e-91 338.6 366 58.7
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 2.8e-90 336.3 345 61.2
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 3.7e-90 335.9 294 65.3
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 4.8e-90 335.5 347 55.3
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 4.8e-90 335.5 333 56.8
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 8.3e-90 334.7 242 71.5
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.6e-88 330.5 345 54.5
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 7.2e-86 321.6 333 62.2
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.6e-85 320.5 348 52.9
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 3.4e-83 312.8 346 56.6
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.8e-82 309.7 343 52.5
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 5.4e-81 305.4 342 54.4
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 7.0e-81 305.1 349 51.3
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.2e-80 304.3 350 52.0
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.3e-79 300.8 340 54.7
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 2.9e-79 299.7 348 50.9
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.1e-78 297.7 331 55.9
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 2.8e-77 293.1 269 59.5
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 1.0e-76 291.2 345 55.9
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 1.4e-76 290.8 268 62.7
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.3e-76 290.0 340 50.6
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.6e-75 286.6 324 53.7
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.7e-74 283.9 325 51.7
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.1e-73 281.2 346 50.3
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.1e-73 281.2 346 50.3
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.8e-73 280.4 346 49.7
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 1.6e-72 277.3 346 49.1
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.9e-70 270.4 348 48.6
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 2.5e-70 270.0 323 51.4
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.8e-68 263.8 345 52.5
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 4.0e-68 262.7 241 60.2
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 6.8e-68 261.9 343 48.7
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.2e-65 253.1 304 52.0
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 5.4e-65 252.3 346 46.5
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 5.4e-65 252.3 310 50.0
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 2.0e-64 250.4 323 48.3
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.9e-63 246.1 323 45.2
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 1.1e-62 244.6 318 48.1
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.3e-62 242.7 324 46.3
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 4.3e-62 242.7 358 52.5
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 1.6e-61 240.7 286 50.7
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 2.1e-61 240.4 328 46.6
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 4.0e-60 236.1 353 51.3
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 5.8e-59 232.3 339 43.4
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 7.5e-59 231.9 282 51.4
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 1.7e-58 230.7 328 45.1
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 5.4e-57 225.7 289 47.4
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 9.2e-57 224.9 284 49.6
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 1.6e-56 224.2 300 48.3
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 4.6e-56 222.6 270 50.7
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 4.6e-56 222.6 296 48.3
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.0e-55 221.5 354 39.5
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 9.9e-51 204.9 269 47.2
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 9.9e-51 204.9 321 41.1
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 1.6e-48 197.6 290 43.1
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 2.1e-48 197.2 343 38.2
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 2.1e-45 187.2 186 54.8
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 3.8e-42 176.4 138 71.0
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 7.1e-41 172.2 235 47.2
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 6.0e-40 169.1 219 47.5
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.0e-39 166.8 172 68.0
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 1.3e-37 161.4 176 55.1
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 9.9e-35 151.8 152 58.6
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 7.1e-33 145.6 299 37.8
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 8.1e-29 132.1 314 35.0
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.2e-25 119.8 315 34.3
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 6.2e-21 105.9 290 35.5
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 1.7e-18 97.8 282 32.3
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 1.7e-18 97.8 282 32.3
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 2.2e-18 97.4 172 45.3
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 1.5e-14 84.7 290 38.3
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 1.6e-13 81.3 55 74.5
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.4e-12 78.2 50 80.0
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 1.2e-11 75.1 127 44.1
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 4.5e-11 73.2 91 47.3


User provided reference genes

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