Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 2.7e-132 475.3 237 100.0
SGA_v2.0_scaffold228G43254 Striga asiatica HOM05D000978 ORTHO05D005320 2.6e-50 203.0 204 61.3
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 1.4e-32 144.1 76 90.8
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 9.2e-32 141.4 76 82.9
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 1.2e-31 141.0 87 75.9
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 1.6e-31 140.6 80 80.0
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 1.6e-31 140.6 76 85.5
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 3.5e-31 139.4 76 82.9
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 7.8e-31 138.3 76 82.9
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 1.0e-30 137.9 76 81.6
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 1.0e-30 137.9 95 70.5
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 1.0e-30 137.9 78 80.8
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.0e-30 137.9 76 80.3
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.3e-30 137.5 83 73.5
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 1.3e-30 137.5 83 73.5
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 1.7e-30 137.1 99 67.7
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 1.7e-30 137.1 78 83.3
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 2.3e-30 136.7 76 78.9
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 2.3e-30 136.7 78 82.1
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 3.0e-30 136.3 83 77.1
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.0e-30 136.3 76 80.3
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 3.9e-30 136.0 76 82.9
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 5.1e-30 135.6 76 81.6
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 5.1e-30 135.6 78 75.6
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 5.1e-30 135.6 98 68.4
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 6.6e-30 135.2 98 70.4
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 6.6e-30 135.2 98 69.4
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 6.6e-30 135.2 76 81.6
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 6.6e-30 135.2 78 80.8
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 8.6e-30 134.8 76 78.9
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 8.6e-30 134.8 99 69.7
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 8.6e-30 134.8 148 52.7
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 1.1e-29 134.4 76 80.3
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 1.5e-29 134.0 78 79.5
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 1.9e-29 133.7 76 82.9
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 1.9e-29 133.7 76 78.9
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 1.9e-29 133.7 78 78.2
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 1.9e-29 133.7 76 80.3
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 2.5e-29 133.3 76 77.6
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 2.5e-29 133.3 98 69.4
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 3.3e-29 132.9 78 78.2
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 3.3e-29 132.9 118 61.0
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 3.3e-29 132.9 78 79.5
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 3.3e-29 132.9 76 81.6
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.3e-29 132.5 76 80.3
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 5.6e-29 132.1 78 75.6
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 5.6e-29 132.1 78 75.6
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 5.6e-29 132.1 78 75.6
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 5.6e-29 132.1 76 81.6
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 7.3e-29 131.7 76 80.3
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 7.3e-29 131.7 101 67.3
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 9.5e-29 131.3 78 78.2
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 9.5e-29 131.3 78 78.2
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 9.5e-29 131.3 76 82.9
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.2e-28 131.0 78 79.5
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.2e-28 131.0 78 79.5
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 1.2e-28 131.0 98 66.3
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.6e-28 130.6 75 78.7
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 1.6e-28 130.6 76 77.6
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 2.1e-28 130.2 76 76.3
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 2.8e-28 129.8 98 67.3
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 3.6e-28 129.4 76 76.3
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 3.6e-28 129.4 76 80.3
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 3.6e-28 129.4 81 74.1
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 4.7e-28 129.0 98 67.3
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 4.7e-28 129.0 78 78.2
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 4.7e-28 129.0 101 63.4
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 4.7e-28 129.0 87 73.6
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 4.7e-28 129.0 78 76.9
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 4.7e-28 129.0 98 66.3
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 4.7e-28 129.0 76 77.6
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 4.7e-28 129.0 76 77.6
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 6.2e-28 128.6 98 66.3
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 8.1e-28 128.3 74 78.4
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 1.1e-27 127.9 78 78.2
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 1.1e-27 127.9 76 76.3
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 1.4e-27 127.5 78 75.6
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 1.4e-27 127.5 78 75.6
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 1.4e-27 127.5 78 75.6
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 1.4e-27 127.5 78 75.6
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 1.4e-27 127.5 78 74.4
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.8e-27 127.1 76 77.6
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.8e-27 127.1 78 75.6
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 2.3e-27 126.7 76 75.0
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 3.1e-27 126.3 78 74.4
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 3.1e-27 126.3 78 74.4
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 4.0e-27 125.9 78 74.4
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 5.2e-27 125.6 76 75.0
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 5.2e-27 125.6 78 71.8
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 8.9e-27 124.8 87 67.8
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 8.9e-27 124.8 78 74.4
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 1.5e-26 124.0 76 73.7
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 1.5e-26 124.0 76 73.7
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 3.4e-26 122.9 76 69.7
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 5.8e-26 122.1 99 63.6
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 9.9e-26 121.3 76 68.4
SGA_v2.0_scaffold100G29630 Striga asiatica HOM05D000978 ORTHO05D000813 1.3e-25 120.9 104 61.5
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 2.2e-25 120.2 76 73.7
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.7e-25 119.4 83 68.7
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 6.4e-25 118.6 70 71.4
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 8.3e-25 118.2 78 69.2
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 3.2e-24 116.3 62 82.3
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 5.4e-24 115.5 87 62.1
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 5.4e-24 115.5 63 82.5
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.2e-23 114.4 99 58.6
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.1e-23 113.6 62 83.9
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 2.7e-23 113.2 76 64.5
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 3.9e-22 109.4 76 64.5
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 8.6e-22 108.2 62 75.8
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 1.5e-21 107.5 87 58.6
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 1.5e-21 107.5 76 60.5
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 1.9e-21 107.1 87 56.3
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 2.5e-21 106.7 87 57.5
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 2.5e-21 106.7 87 57.5
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 4.3e-21 105.9 87 57.5
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 5.6e-21 105.5 87 56.3
SGA_v2.0_scaffold22G09802 Striga asiatica HOM05D000978 ORTHO05D000813 1.2e-20 104.4 104 51.9
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 2.1e-20 103.6 76 59.2
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 2.8e-20 103.2 63 76.2
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 2.8e-20 103.2 63 76.2
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 1.1e-19 101.3 88 53.4
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.1e-19 101.3 78 60.3
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 2.0e-18 97.1 88 53.4
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.8e-17 92.8 56 73.2
Oeu029213.1 Olea europaea HOM05D000978 ORTHO05D000813 7.8e-15 85.1 104 48.1
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 3.9e-14 82.8 76 57.9
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 5.1e-14 82.4 42 83.3
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 2.1e-12 77.0 41 80.5
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 3.6e-12 76.3 41 78.0
MSTRG.18788 Avicennia marina HOM05D000978 ORTHO05D000813 1.1e-11 74.7 101 48.5
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 1.1e-11 74.7 48 68.8
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 1.8e-11 73.9 53 64.2
PGSC0003DMG400005894 Solanum tuberosum HOM05D000978 ORTHO05D000813 1.8e-11 73.9 107 40.2
Dinv09383 Davidia involucrata HOM05D000978 ORTHO05D000813 2.4e-11 73.6 107 41.1
SGA_v2.0_scaffold268G46225 Striga asiatica HOM05D000978 ORTHO05D000813 4.0e-11 72.8 108 43.5
SalBow6G4065 Salvia bowleyana HOM05D000978 ORTHO05D000813 5.3e-11 72.4 104 41.3
PGSC0003DMG400019624 Solanum tuberosum HOM05D000978 ORTHO05D000813 9.0e-11 71.6 107 38.3
CAN.G1726.1 Capsicum annuum HOM05D000978 ORTHO05D000813 2.0e-10 70.5 107 39.3
Dinv18835 Davidia involucrata HOM05D000978 ORTHO05D000813 3.4e-10 69.7 107 40.2
Solyc06g074110.3 Solanum lycopersicum HOM05D000978 ORTHO05D000813 3.4e-10 69.7 107 37.4
Sopen06g030540 Solanum pennellii HOM05D000978 ORTHO05D000813 3.4e-10 69.7 107 37.4
MSTRG.21013 Avicennia marina HOM05D000978 ORTHO05D000813 1.3e-09 67.8 104 42.3
MSTRG.12387 Avicennia marina HOM05D000978 ORTHO05D000813 4.9e-09 65.9 104 42.3
CSS0042975 Camellia sinensis var. sinensis HOM05D000978 ORTHO05D000813 4.9e-09 65.9 107 42.1
CAN.G689.20 Capsicum annuum HOM05D000978 ORTHO05D000813 8.4e-09 65.1 107 40.2
SalBow3G3004 Salvia bowleyana HOM05D000978 ORTHO05D000813 1.1e-08 64.7 94 42.6
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 1.4e-08 64.3 50 52.0
Sopen11g027670 Solanum pennellii HOM05D000978 ORTHO05D000813 1.9e-08 63.9 107 35.5
Cc01_g07640 Coffea canephora HOM05D000978 ORTHO05D000813 3.2e-08 63.2 100 41.0
Nitab4.5_0000380g0090 Nicotiana tabacum HOM05D000978 ORTHO05D000813 3.2e-08 63.2 107 41.1
Solyc11g068960.2 Solanum lycopersicum HOM05D000978 ORTHO05D000813 3.2e-08 63.2 107 35.5
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 4.2e-08 62.8 46 52.2
Duzib168G0251 Durio zibethinus HOM05D000978 ORTHO05D000813 4.2e-08 62.8 107 36.4
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 5.4e-08 62.4 55 52.7
MSTRG.17682 Avicennia marina HOM05D000978 ORTHO05D000813 7.1e-08 62.0 107 38.3
CSS0038620 Camellia sinensis var. sinensis HOM05D000978 ORTHO05D000813 7.1e-08 62.0 107 38.3
DCAR_012241 Daucus carota HOM05D000978 ORTHO05D000813 9.3e-08 61.6 93 46.2
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 9.3e-08 61.6 78 38.5
SGA_v2.0_scaffold92G28141 Striga asiatica HOM05D000978 ORTHO05D000813 9.3e-08 61.6 60 53.3
Lj1C267T8 Lonicera japonica HOM05D000978 ORTHO05D000813 1.2e-07 61.2 106 35.8
CSS0008992 Camellia sinensis var. sinensis HOM05D000978 ORTHO05D000813 1.6e-07 60.8 107 37.4
Nitab4.5_0010113g0010 Nicotiana tabacum HOM05D000978 ORTHO05D000813 1.6e-07 60.8 107 39.3
Rhsim01G0201100 Rhododendron simsii HOM05D000978 ORTHO05D000813 1.6e-07 60.8 107 39.3
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 2.1e-07 60.5 33 87.9
GSVIVG01037572001 Vitis vinifera HOM05D000978 ORTHO05D000813 3.5e-07 59.7 107 40.2
Oeu048834.2 Olea europaea HOM05D000978 ORTHO05D000813 6.0e-07 58.9 63 46.0
PGR102G2990 Punica granatum HOM05D000978 ORTHO05D000813 7.9e-07 58.5 85 42.4
Gorai.006G115500 Gossypium raimondii HOM05D000978 ORTHO05D000813 1.0e-06 58.2 108 38.0
SGA_v2.0_scaffold200G41306 Striga asiatica HOM05D001218 ORTHO05D405768 1.0e-06 58.2 30 93.3
CANSAT54G1931 Cannabis sativa HOM05D000978 ORTHO05D000813 2.3e-06 57.0 107 37.4
Cfa010170 Carpinus fangiana HOM05D000978 ORTHO05D000813 2.3e-06 57.0 102 34.3
CiPaw.13G129400 Carya illinoinensis HOM05D000978 ORTHO05D000813 3.0e-06 56.6 102 36.3
Gohir.D09G098500 Gossypium hirsutum HOM05D000978 ORTHO05D000813 3.0e-06 56.6 107 37.4
Prupe.6G144300 Prunus persica HOM05D000978 ORTHO05D000813 3.0e-06 56.6 106 32.1
AUR62001552 Chenopodium quinoa HOM05D000978 ORTHO05D000813 5.1e-06 55.8 95 40.0
AUR62020231 Chenopodium quinoa HOM05D000978 ORTHO05D000813 5.1e-06 55.8 96 40.6
Nitab4.5_0001491g0090 Nicotiana tabacum HOM05D000978 ORTHO05D000813 6.6e-06 55.5 107 37.4
arahy.Tifrunner.gnm1.ann1.14I9QE Arachis hypogaea HOM05D000978 ORTHO05D000813 8.7e-06 55.1 98 35.7
arahy.Tifrunner.gnm1.ann1.A34414 Arachis hypogaea HOM05D000978 ORTHO05D000813 8.7e-06 55.1 98 35.7
Haze_23556 Corylus avellana HOM05D000978 ORTHO05D000813 8.7e-06 55.1 104 36.5
Nitab4.5_0000158g0070 Nicotiana tabacum HOM05D000978 ORTHO05D000813 8.7e-06 55.1 107 37.4


User provided reference genes

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