Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold135G34928 Striga asiatica HOM05D006844 ORTHO05D008504 0.0e+00 1178.3 755 100.0
MSTRG.24057 Avicennia marina HOM05D006844 ORTHO05D008504 5.9e-157 558.9 775 61.5
SalBow1G4663 Salvia bowleyana HOM05D006844 ORTHO05D008504 3.8e-148 529.6 661 67.3
CAN.G473.42 Capsicum annuum HOM05D006844 ORTHO05D008504 7.2e-147 525.4 763 60.2
Migut.H00039 Erythranthe guttata HOM05D006844 ORTHO05D008504 1.1e-142 511.5 752 62.6
Cfa007302 Carpinus fangiana HOM05D006844 ORTHO05D008504 3.6e-138 496.5 760 53.4
Prupe.2G095300 Prunus persica HOM05D006844 ORTHO05D008504 6.8e-137 492.3 532 51.1
Dinv33400 Davidia involucrata HOM05D006844 ORTHO05D008504 3.4e-136 490.0 454 55.9
Peaxi162Scf00420g00214 Petunia axillaris HOM05D006844 ORTHO05D008504 3.1e-134 483.4 674 63.4
Cc07_g00220 Coffea canephora HOM05D006844 ORTHO05D008504 4.5e-133 479.6 777 57.0
Nitab4.5_0000935g0090 Nicotiana tabacum HOM05D006844 ORTHO05D008504 1.3e-132 478.0 542 50.9
Manes.17G108800 Manihot esculenta HOM05D006844 ORTHO05D008504 2.5e-131 473.8 746 58.7
TWI12G0359 Tripterygium wilfordii HOM05D006844 ORTHO05D008504 1.2e-130 471.5 760 49.2
Haze_14791 Corylus avellana HOM05D006844 ORTHO05D008504 1.8e-129 467.6 757 51.1
Nitab4.5_0001031g0200 Nicotiana tabacum HOM05D006844 ORTHO05D008504 4.4e-128 463.0 759 58.2
PGSC0003DMG400012620 Solanum tuberosum HOM05D006844 ORTHO05D008504 1.7e-127 461.1 765 58.0
Lj1g0000789 Lotus japonicus HOM05D006844 ORTHO05D008504 7.8e-125 452.2 755 56.6
FvH4_7g06820 Fragaria vesca HOM05D006844 ORTHO05D008504 9.5e-123 445.3 430 53.7
vmacro05902 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 9.5e-123 445.3 444 52.0
Thecc.04G024500 Theobroma cacao HOM05D006844 ORTHO05D008504 1.2e-120 438.3 758 55.9
PSO017G3485 Papaver somniferum HOM05D006844 ORTHO05D008504 4.4e-120 436.4 687 58.2
HanXRQChr07g0199131 Helianthus annuus HOM05D006844 ORTHO05D008504 9.8e-120 435.3 460 51.3
Hma1.2p1_0818F.1_g223470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 4.9e-119 433.0 366 59.3
PSO478G2097 Papaver somniferum HOM05D006844 ORTHO05D008504 1.1e-118 431.8 687 57.9
CSS0048025 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 1.9e-118 431.0 537 45.4
AUR62035998 Chenopodium quinoa HOM05D006844 ORTHO05D008504 2.4e-118 430.6 539 46.8
Duzib147G1239 Durio zibethinus HOM05D006844 ORTHO05D008504 2.4e-118 430.6 758 56.2
PGR083G0468 Punica granatum HOM05D006844 ORTHO05D008504 2.4e-118 430.6 438 52.3
CiPaw.03G048400 Carya illinoinensis HOM05D006844 ORTHO05D008504 4.1e-118 429.9 689 59.9
TAR374G0379 Trochodendron aralioides HOM05D006844 ORTHO05D008504 4.1e-118 429.9 656 60.8
CSS0042583 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 9.2e-118 428.7 537 45.3
Sopen02g038250 Solanum pennellii HOM05D006844 ORTHO05D008504 4.6e-117 426.4 756 56.1
ClCG05G013040 Citrullus lanatus HOM05D006844 ORTHO05D008504 3.0e-116 423.7 494 48.2
arahy.Tifrunner.gnm1.ann1.QHJM8I Arachis hypogaea HOM05D006844 ORTHO05D008504 6.6e-116 422.5 364 56.6
MD09G1019500 Malus domestica HOM05D006844 ORTHO05D008504 6.6e-116 422.5 526 46.8
Sabra06G0144800 Salix brachista HOM05D006844 ORTHO05D008504 6.6e-116 422.5 776 55.7
AL6G25060 Arabidopsis lyrata HOM05D006844 ORTHO05D008504 1.1e-115 421.8 360 58.3
TAR622G0321 Trochodendron aralioides HOM05D006844 ORTHO05D008504 1.1e-115 421.8 693 56.9
Hma1.2p1_1484F.1_g286470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.5e-115 421.4 775 37.8
Hma1.2p1_1484F.1_g286476 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.5e-115 421.4 775 37.8
Sabra17G0063000 Salix brachista HOM05D006844 ORTHO05D008504 1.5e-115 421.4 773 55.5
AT3G46610 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 2.5e-115 420.6 360 59.2
RcHm_v2.0_Chr1g0336521 Rosa chinensis HOM05D006844 ORTHO05D008504 3.3e-115 420.2 493 48.1
Atru.chr6.2466 Acer truncatum HOM05D006844 ORTHO05D008504 5.6e-115 419.5 770 54.3
FAN01G2612 Fragaria x ananassa HOM05D006844 ORTHO05D008504 7.3e-115 419.1 430 52.3
Ca_03833_v3 Cicer arietinum L. HOM05D006844 ORTHO05D008504 1.6e-114 417.9 517 48.2
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 2.1e-114 417.5 435 51.5
MD17G1020100 Malus domestica HOM05D006844 ORTHO05D008504 2.8e-114 417.2 524 47.1
Potri.017G070800 Populus trichocarpa HOM05D006844 ORTHO05D008504 8.1e-114 415.6 767 55.4
Eucgr.J02268 Eucalyptus grandis HOM05D006844 ORTHO05D008504 1.1e-113 415.2 631 62.6
MELO3C014826.2 Cucumis melo HOM05D006844 ORTHO05D008504 1.8e-113 414.5 439 51.0
Rhsim10G0012800 Rhododendron simsii HOM05D006844 ORTHO05D008504 8.9e-113 412.1 777 54.1
Actinidia36147 Actinidia chinensis HOM05D006844 ORTHO05D008504 1.2e-112 411.8 672 58.8
Glyma.16G066300 Glycine max HOM05D006844 ORTHO05D008504 2.0e-112 411.0 645 61.7
Phvul.008G145600 Phaseolus vulgaris HOM05D006844 ORTHO05D008504 5.8e-112 409.5 502 46.4
VMungo1080G0705 Vigna mungo HOM05D006844 ORTHO05D008504 5.8e-112 409.5 548 44.5
QL02p073443 Quercus lobata HOM05D006844 ORTHO05D008504 9.9e-112 408.7 448 50.0
Gohir.D04G080600 Gossypium hirsutum HOM05D006844 ORTHO05D008504 1.7e-111 407.9 761 55.1
DCAR_011279 Daucus carota HOM05D006844 ORTHO05D008504 2.2e-111 407.5 442 49.1
FAN03G0177 Fragaria x ananassa HOM05D006844 ORTHO05D008504 2.2e-111 407.5 430 51.2
Nn4g22496 Nelumbo nucifera HOM05D006844 ORTHO05D008504 5.4e-110 402.9 552 44.0
Gorai.012G091600 Gossypium raimondii HOM05D006844 ORTHO05D008504 2.1e-109 401.0 761 54.8
Sed0025706 Sechium edule HOM05D006844 ORTHO05D008504 2.1e-109 401.0 379 55.1
vmacro05904 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 2.1e-109 401.0 783 54.0
Hma1.2p1_1484F.1_g286480 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 3.5e-109 400.2 563 44.0
CARHR198970 Cardamine hirsuta HOM05D006844 ORTHO05D008504 4.6e-109 399.8 364 54.9
MBI13_g29568_MAGBIO Magnolia biondii HOM05D006844 ORTHO05D008504 1.3e-108 398.3 756 53.8
FAN10G3353 Fragaria x ananassa HOM05D006844 ORTHO05D008504 1.7e-108 397.9 425 50.1
Hund11892 Selenicereus undatus HOM05D006844 ORTHO05D008504 3.0e-108 397.1 363 54.8
Sp6g29690 Schrenkiella parvula HOM05D006844 ORTHO05D008504 3.9e-108 396.7 360 55.8
Solyc02g093620.2 Solanum lycopersicum HOM05D006844 ORTHO05D008504 1.1e-107 395.2 549 66.5
THA.LOC104821106 Tarenaya hassleriana HOM05D006844 ORTHO05D008504 1.1e-107 395.2 430 50.2
AUR62041622 Chenopodium quinoa HOM05D006844 ORTHO05D008504 5.6e-107 392.9 538 43.7
Sc07g0004300 Simmondsia chinensis HOM05D006844 ORTHO05D008504 7.3e-107 392.5 539 43.0
CANSAT64G2991 Cannabis sativa HOM05D006844 ORTHO05D008504 1.6e-106 391.3 497 46.7
Ciclev10014357m.g Citrus clementina HOM05D006844 ORTHO05D008504 1.6e-106 391.3 537 44.9
CsaV3_3G027490 Cucumis sativus L. HOM05D006844 ORTHO05D008504 2.8e-106 390.6 339 58.1
BcaB01g06378 Brassica carinata HOM05D006844 ORTHO05D008504 4.7e-106 389.8 375 54.1
Thhalv10015672m.g Eutrema salsugineum HOM05D006844 ORTHO05D008504 8.1e-106 389.0 516 45.7
Glyma.19G080500 Glycine max HOM05D006844 ORTHO05D008504 1.1e-105 388.7 367 53.1
Carub.0005s1288 Capsella rubella HOM05D006844 ORTHO05D008504 1.8e-105 387.9 515 46.6
Lalb_Chr14g0362981 Lupinus albus HOM05D006844 ORTHO05D008504 1.8e-105 387.9 421 49.4
COL.COLO4_29236 Corchorus olitorius HOM05D006844 ORTHO05D008504 2.4e-105 387.5 534 44.2
Lsat_1_v5_gn_2_93460 Lactuca sativa HOM05D006844 ORTHO05D008504 5.2e-105 386.3 330 57.0
TPR.G1077 Trifolium pratense HOM05D006844 ORTHO05D008504 1.5e-104 384.8 357 52.7
Gohir.A05G342700 Gossypium hirsutum HOM05D006844 ORTHO05D008504 1.7e-103 381.3 557 65.4
Lj7P604T32 Lonicera japonica HOM05D006844 ORTHO05D008504 2.9e-103 380.6 542 66.6
Aqoxy3G01340 Aquilegia oxysepala HOM05D006844 ORTHO05D008504 3.8e-103 380.2 765 52.4
Aa31LG11G15140 Aethionema arabicum HOM05D006844 ORTHO05D008504 8.4e-103 379.0 511 44.4
Psat3g169440 Pisum sativum HOM05D006844 ORTHO05D008504 1.2e-101 375.2 408 48.0
HPP92_010824 Vanilla planifolia HOM05D006844 ORTHO05D008504 1.6e-101 374.8 610 57.9
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 4.6e-101 373.2 472 44.7
Os12g0283900 Oryza sativa ssp. japonica HOM05D006844 ORTHO05D008504 1.5e-99 368.2 375 49.9
ATR0824G256 Amborella trichopoda HOM05D006844 ORTHO05D008504 6.9e-97 359.4 485 43.9
BcaB01g05117 Brassica carinata HOM05D006844 ORTHO05D008504 3.5e-93 347.1 365 49.9
C03p07580 Brassica napus HOM05D006844 ORTHO05D008504 3.5e-93 347.1 365 49.9
BolC3t13259H Brassica oleracea HOM05D006844 ORTHO05D008504 4.6e-93 346.7 365 50.4
BraA03t09988Z Brassica rapa HOM05D006844 ORTHO05D008504 4.6e-93 346.7 365 49.9
A03p06560 Brassica napus HOM05D006844 ORTHO05D008504 5.1e-92 343.2 365 49.6
Oeu023834.1 Olea europaea HOM05D006844 ORTHO05D008504 7.6e-88 329.3 525 47.2
CDE09G1288 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 1.1e-86 325.5 449 41.6
BcaB01g06331 Brassica carinata HOM05D006844 ORTHO05D008504 3.2e-86 323.9 368 48.4
CDE02G4692 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 3.9e-84 317.0 446 41.0
Hma1.2p1_0818F.1_g223460 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 6.2e-82 309.7 271 56.8
Zm00001eb273000 Zea mays HOM05D006844 ORTHO05D008504 1.5e-80 305.1 269 53.2
GSVIVG01003980001 Vitis vinifera HOM05D006844 ORTHO05D008504 6.9e-57 226.5 332 41.0
Pp3c26_10760 Physcomitrium patens HOM05D006844 ORTHO05D008504 5.3e-49 200.3 373 31.4
AagrBONN_evm.TU.Sc2ySwM_117.3382 Anthoceros agrestis HOM05D006844 ORTHO05D008504 2.6e-43 181.4 390 29.2
Mapoly0038s0061 Marchantia polymorpha HOM05D006844 ORTHO05D008504 2.2e-34 151.8 393 28.0
BcaB01g05118 Brassica carinata HOM05D006844 ORTHO05D008504 2.9e-23 114.8 142 45.1
SMO367G0130 Selaginella moellendorffii HOM05D006844 ORTHO05D008504 4.2e-22 110.9 167 37.1
AUR62025550 Chenopodium quinoa HOM05D006844 ORTHO05D008504 1.0e-20 106.3 61 78.7
EL10Ac2g03526 Beta vulgaris HOM05D006844 ORTHO05D008504 2.2e-18 98.6 109 46.8
SalBow1G4926 Salvia bowleyana HOM05D006844 ORTHO05D008504 3.1e-17 94.7 76 60.5
vmacro02614 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 5.4e-09 67.4 263 25.5
vmacro05905 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 4.6e-08 64.3 43 67.4
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 7.8e-08 63.5 199 27.1
Rhsim13G0028900 Rhododendron simsii HOM05D000001 ORTHO05D000003 7.8e-08 63.5 256 23.8
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 2.3e-07 62.0 180 24.4
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 2.3e-07 62.0 164 26.2
BcaNung04265 Brassica carinata HOM05D000001 ORTHO05D000003 5.0e-07 60.8 274 22.6
Ciclev10011148m.g Citrus clementina HOM05D000855 ORTHO05D008530 5.0e-07 60.8 184 25.5
SMO234G0039 Selaginella moellendorffii HOM05D000001 ORTHO05D375643 5.0e-07 60.8 309 22.0
Nn2g12986 Nelumbo nucifera HOM05D000855 ORTHO05D008530 6.6e-07 60.5 165 27.3
Cc01_g05550 Coffea canephora HOM05D000001 ORTHO05D000003 8.6e-07 60.1 301 18.6
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 8.6e-07 60.1 141 26.2
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 1.1e-06 59.7 309 22.3
Gohir.D13G123500 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.5e-06 59.3 304 22.4
Gorai.013G138500 Gossypium raimondii HOM05D000001 ORTHO05D000003 1.5e-06 59.3 304 22.7
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 1.5e-06 59.3 139 26.6
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 1.9e-06 58.9 186 25.8
AagrBONN_evm.TU.Sc2ySwM_117.2859 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.3e-06 58.2 309 20.4
Atru.BG.218.p Acer truncatum HOM05D000855 ORTHO05D008530 4.3e-06 57.8 141 26.2
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 4.3e-06 57.8 141 25.5
Lj5g0021887 Lotus japonicus HOM05D000855 ORTHO05D008530 4.3e-06 57.8 139 26.6
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 4.3e-06 57.8 141 26.2
PSO017G4104 Papaver somniferum HOM05D000001 ORTHO05D000003 4.3e-06 57.8 348 21.0
Prupe.4G268300 Prunus persica HOM05D000001 ORTHO05D000003 4.3e-06 57.8 268 22.4
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 5.6e-06 57.4 141 26.2
Oeu019776.1 Olea europaea HOM05D007251 ORTHO05D009266 5.6e-06 57.4 146 29.5
PSO478G3891 Papaver somniferum HOM05D000001 ORTHO05D000003 5.6e-06 57.4 343 21.9
PGR142G0989 Punica granatum HOM05D000855 ORTHO05D008530 5.6e-06 57.4 141 26.2
Ah.08g211930 Amaranthus hybridus HOM05D000855 ORTHO05D008530 7.3e-06 57.0 194 26.3
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 7.3e-06 57.0 141 25.5
Duzib168G1420 Durio zibethinus HOM05D007251 ORTHO05D009266 7.3e-06 57.0 143 28.7
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 7.3e-06 57.0 139 25.9
AagrBONN_evm.TU.Sc2ySwM_228.5525 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.5e-06 56.6 327 19.9
AagrBONN_evm.TU.Sc2ySwM_344.1284 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.5e-06 56.6 353 22.4
Ciclev10004576m.g Citrus clementina HOM05D000001 ORTHO05D010150 9.5e-06 56.6 299 21.7
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 9.5e-06 56.6 139 25.9
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 9.5e-06 56.6 141 26.2
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 9.5e-06 56.6 139 25.9


User provided reference genes

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