Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 1.6e-222 775.8 388 100.0
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 3.0e-197 691.8 370 91.9
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 2.1e-190 669.1 370 86.5
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 1.8e-189 666.0 371 87.1
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 3.3e-188 661.8 370 85.4
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 1.3e-187 659.8 370 85.9
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 2.4e-186 655.6 370 84.6
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 2.6e-185 652.1 370 84.3
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 4.5e-185 651.4 371 85.2
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 5.9e-185 651.0 371 85.2
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 1.0e-184 650.2 371 85.2
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 1.7e-184 649.4 371 84.1
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 2.2e-184 649.0 366 85.8
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.9e-184 648.7 370 84.1
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.1e-183 646.7 370 83.8
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 9.4e-183 643.7 370 85.4
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.6e-182 642.9 374 83.4
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 1.4e-181 639.8 367 84.2
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 7.7e-177 624.0 370 79.5
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.3e-176 623.2 370 81.6
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 1.4e-175 619.8 370 79.7
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 9.4e-175 617.1 370 79.2
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 4.7e-174 614.8 379 77.8
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 7.9e-174 614.0 372 79.3
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 2.3e-173 612.5 370 78.1
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 5.7e-172 607.8 372 78.5
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 9.7e-172 607.1 338 84.9
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 1.3e-171 606.7 370 77.6
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 3.7e-171 605.1 370 78.1
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 3.7e-171 605.1 370 79.2
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 6.3e-171 604.4 337 85.2
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 8.2e-171 604.0 370 77.6
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 1.4e-170 603.2 370 77.6
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 4.1e-170 601.7 370 77.8
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 4.1e-170 601.7 370 77.3
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 5.3e-170 601.3 370 78.4
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 3.4e-169 598.6 370 76.8
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 5.9e-169 597.8 371 76.8
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 5.0e-168 594.7 370 75.1
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 4.2e-167 591.7 391 73.4
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 9.4e-167 590.5 370 75.9
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 2.1e-166 589.3 374 76.7
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 1.4e-165 586.6 371 74.4
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 2.3e-165 585.9 374 74.9
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 8.8e-165 583.9 370 74.1
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 8.8e-165 583.9 385 73.8
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 2.0e-164 582.8 370 72.7
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 4.4e-164 581.6 370 72.4
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 8.2e-163 577.4 392 71.7
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.0e-161 572.8 386 72.0
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 2.6e-161 572.4 386 72.0
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 7.7e-161 570.9 354 76.0
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.0e-160 570.5 366 73.8
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.3e-160 570.1 386 71.8
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 2.2e-160 569.3 370 73.0
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 2.5e-159 565.8 342 77.8
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 3.2e-159 565.5 406 67.7
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 5.5e-159 564.7 355 75.5
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 1.2e-158 563.5 369 72.1
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 8.8e-157 557.4 366 72.1
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 2.0e-156 556.2 372 73.9
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 3.3e-156 555.4 386 69.4
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 6.3e-155 551.2 392 70.7
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 1.1e-154 550.4 373 70.8
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 1.8e-154 549.7 354 73.7
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 4.1e-154 548.5 338 75.1
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 5.3e-154 548.1 358 72.3
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 4.5e-153 545.0 355 72.4
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.3e-152 543.5 337 73.6
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 8.5e-152 540.8 372 70.2
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 1.9e-151 539.7 372 70.2
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 1.9e-151 539.7 372 70.2
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 5.5e-151 538.1 373 70.0
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 7.2e-151 537.7 354 70.9
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 3.6e-150 535.4 416 65.1
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 6.8e-149 531.2 371 70.4
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 7.5e-148 527.7 367 70.6
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 2.8e-147 525.8 356 69.1
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 4.8e-147 525.0 371 69.8
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 1.8e-146 523.1 371 68.7
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 2.0e-145 519.6 366 69.1
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 7.7e-145 517.7 349 71.3
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 1.0e-144 517.3 372 69.6
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 1.3e-144 516.9 337 71.8
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 2.3e-144 516.2 370 65.1
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 1.1e-143 513.8 371 67.4
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 2.8e-142 509.2 354 69.8
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 4.0e-141 505.4 366 66.7
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 4.4e-140 501.9 376 65.2
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 7.5e-140 501.1 441 59.6
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 3.1e-138 495.7 328 76.5
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 5.9e-137 491.5 373 63.5
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.0e-136 490.7 400 65.2
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 3.3e-135 485.7 369 62.1
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 3.4e-124 449.1 375 63.2
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 8.3e-123 444.5 370 60.3
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 1.1e-122 444.1 358 62.6
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 3.2e-122 442.6 370 60.5
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 6.2e-118 428.3 292 71.9
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 1.4e-117 427.2 291 71.5
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 1.8e-117 426.8 291 71.8
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 6.8e-117 424.9 379 60.7
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.5e-116 423.7 370 61.1
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 5.1e-112 408.7 346 59.8
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 1.5e-108 397.1 356 54.8
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 8.1e-102 374.8 358 55.0
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 1.5e-100 370.5 245 69.8
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 1.3e-99 367.5 300 62.0
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 5.1e-96 355.5 249 67.1
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 2.3e-88 330.1 370 51.9
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 5.1e-88 328.9 376 46.5
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 8.7e-88 328.2 358 50.6
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 4.0e-85 319.3 201 73.6
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 1.5e-84 317.4 366 48.6
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 1.6e-81 307.4 585 35.6
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 1.1e-79 301.2 375 45.9
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 1.1e-71 274.6 212 62.3
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 8.8e-64 248.4 608 30.3
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 9.7e-63 245.0 528 33.5
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 2.6e-60 236.9 312 46.2
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 1.7e-59 234.2 208 57.2
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.5e-47 194.5 164 61.6
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 6.1e-41 172.6 288 37.2
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 1.8e-40 171.0 288 37.2
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 3.1e-37 160.2 150 50.7
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 7.7e-36 155.6 111 65.8
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 3.6e-33 146.7 88 79.5
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 4.7e-33 146.4 90 76.7
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.3e-22 111.7 69 76.8
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 5.4e-21 106.3 58 82.8
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 3.9e-19 100.1 65 67.7
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 7.3e-18 95.9 65 64.6
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 1.8e-16 91.3 54 81.5
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 5.8e-15 86.3 73 54.8
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 2.7e-12 77.4 134 36.6
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 2.7e-12 77.4 43 79.1
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 5.2e-08 63.2 54 57.4
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 1.3e-06 58.5 40 57.5
Medtr6g007060 Medicago truncatula HOM05D001104 ORTHO05D006624 4.9e-06 56.6 42 54.8


User provided reference genes

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