Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 5.3e-71 271.2 164 100.0
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 3.4e-49 198.7 139 91.4
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 6.8e-42 174.5 138 82.6
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.1e-39 167.2 138 78.3
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 5.4e-39 164.9 135 78.5
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 5.4e-39 164.9 135 78.5
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 3.0e-37 159.1 138 75.4
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 3.3e-36 155.6 137 75.9
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 2.8e-35 152.5 137 70.8
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 2.8e-35 152.5 137 71.5
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 4.7e-35 151.8 138 72.5
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.0e-34 148.7 138 72.5
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.0e-34 148.7 138 72.5
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.0e-34 148.7 137 70.1
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 5.2e-34 148.3 136 71.3
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 5.2e-34 148.3 137 67.2
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 5.2e-34 148.3 137 67.2
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 6.8e-34 147.9 138 72.5
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 1.2e-33 147.1 130 76.2
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 2.0e-33 146.4 155 52.9
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 2.6e-33 146.0 138 71.0
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 4.4e-33 145.2 137 67.9
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 5.8e-33 144.8 138 69.6
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 7.5e-33 144.4 136 69.9
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 9.8e-33 144.1 138 73.2
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 1.7e-32 143.3 138 68.8
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 2.2e-32 142.9 138 71.7
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 3.7e-32 142.1 141 69.5
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 6.4e-32 141.4 129 71.3
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 6.4e-32 141.4 129 72.1
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 8.3e-32 141.0 133 47.4
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 8.3e-32 141.0 130 73.1
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 8.3e-32 141.0 138 72.5
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 1.1e-31 140.6 133 67.7
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 1.1e-31 140.6 132 73.5
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 1.1e-31 140.6 140 54.3
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 1.4e-31 140.2 138 68.1
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.4e-31 140.2 130 72.3
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 1.9e-31 139.8 139 69.8
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 2.4e-31 139.4 129 73.6
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 2.4e-31 139.4 129 70.5
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 5.4e-31 138.3 137 61.3
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 5.4e-31 138.3 130 70.0
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 5.4e-31 138.3 137 69.3
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 9.2e-31 137.5 139 68.3
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 1.2e-30 137.1 139 71.2
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 1.6e-30 136.7 130 70.8
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 2.1e-30 136.3 139 66.9
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 2.7e-30 136.0 139 67.6
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 3.5e-30 135.6 137 69.3
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 7.8e-30 134.4 142 55.6
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 1.7e-29 133.3 134 64.9
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 2.3e-29 132.9 139 68.3
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 3.0e-29 132.5 138 66.7
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 3.9e-29 132.1 137 67.9
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 5.0e-29 131.7 133 63.9
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 6.6e-29 131.3 129 69.0
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 6.6e-29 131.3 131 67.9
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 8.6e-29 131.0 129 64.3
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 1.1e-28 130.6 139 69.8
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 1.5e-28 130.2 88 65.9
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 1.5e-28 130.2 125 69.6
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 2.5e-28 129.4 136 64.0
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 4.3e-28 128.6 130 66.9
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 5.6e-28 128.3 141 59.6
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 5.6e-28 128.3 122 74.6
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 5.6e-28 128.3 128 57.0
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 9.5e-28 127.5 137 65.7
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 1.2e-27 127.1 138 63.8
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 1.6e-27 126.7 137 65.0
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 3.6e-27 125.6 137 66.4
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 8.1e-27 124.4 129 67.4
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 1.1e-26 124.0 138 64.5
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 1.8e-26 123.2 121 71.9
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 4.0e-26 122.1 128 68.8
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 4.0e-26 122.1 138 62.3
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 1.5e-25 120.2 89 59.6
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 2.0e-25 119.8 138 63.0
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 3.4e-25 119.0 138 62.3
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 3.4e-25 119.0 138 62.3
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 4.4e-25 118.6 127 66.1
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 4.4e-25 118.6 132 53.8
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 5.8e-25 118.2 83 56.6
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 9.9e-25 117.5 78 64.1
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 9.9e-25 117.5 137 52.6
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 2.2e-24 116.3 137 41.6
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 2.2e-24 116.3 138 59.4
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 8.3e-24 114.4 118 65.3
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 1.6e-22 110.2 137 59.9
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 2.1e-22 109.8 116 69.0
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 2.1e-22 109.8 118 66.9
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 1.9e-20 103.2 140 56.4
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 3.3e-20 102.4 128 56.2
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 3.3e-20 102.4 128 56.2
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 4.3e-20 102.1 146 34.2
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 4.3e-20 102.1 128 55.5
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 5.6e-20 101.7 109 45.9
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 5.6e-20 101.7 128 55.5
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 7.3e-20 101.3 126 57.1
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 1.2e-19 100.5 128 57.8
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 1.2e-19 100.5 128 57.8
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 1.6e-19 100.1 77 51.9
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 1.1e-18 97.4 128 54.7
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 1.4e-18 97.1 117 59.8
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 1.8e-18 96.7 136 61.0
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 2.4e-18 96.3 134 34.3
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 2.4e-18 96.3 128 54.7
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 8.9e-18 94.4 101 74.3
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 8.4e-16 87.8 138 39.9
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 8.4e-16 87.8 72 45.8
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 2.4e-15 86.3 131 53.4
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 3.2e-15 85.9 96 60.4
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 4.2e-15 85.5 116 50.0
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 4.2e-15 85.5 72 44.4
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 4.6e-14 82.0 128 49.2
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 1.2e-11 73.9 118 31.4
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 1.2e-11 73.9 118 31.4
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 1.2e-11 73.9 118 31.4
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 2.8e-11 72.8 118 30.5
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 2.8e-11 72.8 118 30.5
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 2.8e-11 72.8 118 30.5
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 4.7e-11 72.0 58 53.4
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 4.7e-11 72.0 119 30.3
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 4.7e-11 72.0 59 49.2
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 2.4e-10 69.7 142 43.0
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 2.4e-10 69.7 126 48.4
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 4.9e-08 62.0 73 41.1
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 8.4e-08 61.2 93 34.4
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 4.2e-07 58.9 94 46.8
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 5.4e-07 58.5 105 25.7
Hma1.2p1_1820F.1_g304180 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 6.0e-06 55.1 65 86.2


User provided reference genes

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