Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 6.0e-191 670.6 324 100.0
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 1.3e-132 476.9 336 69.3
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 1.4e-118 430.3 338 64.2
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 2.6e-117 426.0 317 68.5
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 1.3e-116 423.7 338 64.2
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 5.9e-114 414.8 336 63.4
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 1.1e-112 410.6 346 63.6
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 9.4e-112 407.5 342 60.2
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 1.6e-111 406.8 351 60.1
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 4.4e-109 398.7 341 57.8
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 9.7e-109 397.5 347 61.1
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 2.8e-108 396.0 349 60.5
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 4.8e-108 395.2 342 60.5
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 6.3e-108 394.8 337 60.8
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 6.3e-108 394.8 344 61.0
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 1.2e-106 390.6 343 59.2
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 4.5e-106 388.7 343 58.9
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 2.5e-104 382.9 349 56.2
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 4.0e-102 375.6 323 59.1
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 5.2e-102 375.2 338 56.8
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 2.0e-101 373.2 328 58.2
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 5.7e-101 371.7 352 56.8
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 7.5e-101 371.3 323 59.1
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 9.8e-101 370.9 237 73.4
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 2.8e-100 369.4 385 51.4
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 4.8e-100 368.6 323 58.8
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 5.4e-99 365.2 352 55.4
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 5.4e-99 365.2 223 75.8
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 1.6e-98 363.6 348 54.3
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 5.9e-98 361.7 351 55.8
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 7.7e-98 361.3 348 54.0
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 5.5e-96 355.1 351 53.8
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 7.2e-96 354.8 343 54.2
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 1.2e-95 354.0 279 61.3
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 4.7e-95 352.1 267 64.0
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 4.7e-95 352.1 354 52.5
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 1.0e-94 350.9 228 70.6
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 1.4e-94 350.5 348 54.6
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 1.4e-94 350.5 240 67.1
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 1.4e-94 350.5 317 59.3
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 1.8e-94 350.1 354 52.0
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 2.3e-94 349.7 350 54.3
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 2.3e-94 349.7 355 52.4
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 8.9e-94 347.8 295 59.7
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 1.5e-93 347.1 341 54.5
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 1.5e-93 347.1 341 54.5
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 1.5e-93 347.1 360 52.2
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 2.6e-93 346.3 330 54.2
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 3.4e-93 345.9 223 70.9
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 4.4e-93 345.5 336 53.9
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 4.4e-93 345.5 333 55.0
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 4.4e-93 345.5 355 52.7
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 5.7e-93 345.1 339 54.0
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 5.7e-93 345.1 223 70.0
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 7.5e-93 344.7 338 53.8
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 7.5e-93 344.7 223 70.4
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 7.5e-93 344.7 235 69.4
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 9.8e-93 344.4 350 52.3
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 1.7e-92 343.6 372 52.2
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 2.2e-92 343.2 319 57.4
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 2.2e-92 343.2 350 51.7
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 2.8e-92 342.8 350 52.0
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 3.7e-92 342.4 227 69.2
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 6.3e-92 341.7 355 54.4
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 8.3e-92 341.3 243 66.3
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 1.8e-91 340.1 223 70.0
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 4.1e-91 339.0 357 53.5
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 4.1e-91 339.0 227 68.7
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 4.1e-91 339.0 223 70.0
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 5.4e-91 338.6 232 67.2
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 7.0e-91 338.2 294 56.1
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 7.0e-91 338.2 353 51.3
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 1.2e-90 337.4 352 54.0
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.2e-90 337.4 336 53.6
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 1.6e-90 337.0 221 69.2
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 2.7e-90 336.3 251 65.3
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 3.5e-90 335.9 224 68.3
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 4.5e-90 335.5 333 52.9
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 4.5e-90 335.5 333 52.6
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 5.9e-90 335.1 221 70.6
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 2.3e-89 333.2 351 51.6
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 2.9e-89 332.8 355 50.7
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 5.0e-89 332.0 224 67.9
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 6.6e-89 331.6 355 50.4
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 8.6e-89 331.3 325 52.3
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 2.5e-88 329.7 325 51.4
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 6.1e-87 325.1 223 68.2
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 6.1e-87 325.1 317 54.3
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 6.1e-87 325.1 323 51.7
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 1.8e-86 323.6 230 65.2
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 6.8e-86 321.6 304 53.0
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 4.4e-85 318.9 260 56.9
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 1.3e-84 317.4 315 51.1
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 1.7e-84 317.0 299 51.8
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 2.2e-84 316.6 330 50.6
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 3.7e-84 315.8 290 56.6
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 6.4e-84 315.1 228 62.3
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 1.4e-83 313.9 311 55.0
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 2.0e-82 310.1 341 50.7
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 2.0e-82 310.1 298 54.4
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 1.3e-81 307.4 209 69.4
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 4.7e-79 298.9 252 55.6
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 1.8e-78 297.0 223 59.6
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 1.2e-77 294.3 343 48.1
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 5.4e-75 285.4 311 49.8
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 8.6e-73 278.1 212 60.4
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 4.7e-71 272.3 227 55.9
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 5.8e-69 265.4 166 72.3
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 9.9e-69 264.6 212 57.1
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 3.7e-68 262.7 215 57.7
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 1.4e-67 260.8 280 48.9
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 2.4e-67 260.0 215 55.3
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 3.2e-67 259.6 151 79.5
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 4.1e-67 259.2 239 52.7
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 1.3e-65 254.2 215 54.9
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 2.3e-65 253.4 227 53.7
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 2.5e-64 250.0 249 54.2
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 1.2e-63 247.7 230 49.1
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 1.6e-63 247.3 213 55.9
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 4.7e-63 245.7 189 61.9
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 5.8e-61 238.8 261 51.0
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 7.6e-61 238.4 226 50.4
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 3.3e-56 223.0 249 48.2
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 9.6e-56 221.5 152 68.4
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 6.4e-52 208.8 180 53.3
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 1.3e-47 194.5 216 43.1
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 2.2e-44 183.7 334 35.9
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 4.5e-37 159.5 164 44.5
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 2.5e-35 153.7 233 38.6
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 5.5e-35 152.5 144 51.4
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 1.1e-32 144.8 96 71.9
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 5.1e-25 119.4 87 72.4
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 3.3e-24 116.7 112 48.2
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.6e-23 114.4 82 62.2
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 4.6e-18 96.3 58 77.6
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 1.5e-08 64.7 110 36.4
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 4.8e-07 59.7 38 76.3
A04p02350 Brassica napus HOM05D005636 ORTHO05D006912 6.3e-07 59.3 52 61.5


User provided reference genes

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