Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 0.0e+00 1675.2 810 100.0
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1326.2 860 74.8
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1319.7 848 74.9
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1305.0 846 74.1
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1243.0 852 70.1
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1161.0 854 65.9
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1152.9 802 68.1
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1144.4 846 64.8
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1139.0 845 65.6
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1138.6 845 65.6
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1136.3 849 64.0
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1132.1 829 66.2
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1127.9 852 63.6
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1127.5 880 63.1
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1127.5 849 64.9
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1126.3 829 65.4
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1125.9 846 64.2
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1122.8 849 64.4
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1122.5 846 64.1
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1120.1 846 63.9
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1119.8 847 63.2
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1116.7 829 64.9
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1115.9 868 63.9
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1115.1 830 64.3
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1112.1 846 62.6
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1112.1 842 64.1
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1110.9 840 64.4
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1108.6 854 63.1
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1106.7 804 65.2
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1104.7 832 63.3
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1102.8 798 66.2
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1099.3 848 63.7
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1097.8 814 64.4
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1097.0 851 62.3
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1096.3 772 66.8
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1095.9 864 62.4
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1095.1 777 67.8
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1094.0 847 63.3
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1093.2 841 62.1
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1091.3 837 63.0
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1088.6 845 63.2
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1088.2 807 65.1
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1087.4 767 67.0
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1084.3 844 63.2
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1083.9 971 56.7
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1081.2 831 63.8
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 5.5e-312 1074.7 848 61.9
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 5.5e-312 1073.5 790 63.5
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 1.1e-311 1072.8 817 64.0
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 2.8e-311 1071.6 850 61.8
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 2.1e-309 1065.4 801 63.0
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 2.1e-309 1065.4 797 64.1
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 2.7e-309 1065.1 858 61.0
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 4.6e-309 1064.3 850 60.6
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 3.0e-308 1061.6 806 64.0
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 6.7e-308 1060.4 844 62.6
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 8.7e-308 1060.1 849 62.1
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 1.1e-307 1059.7 848 61.1
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 3.3e-307 1058.1 844 61.3
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 7.4e-307 1057.0 854 60.2
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 7.4e-307 1057.0 853 61.0
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 5.3e-305 1050.8 840 60.7
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 7.7e-304 1047.0 804 61.7
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 7.7e-304 1047.0 809 62.1
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.3e-303 1046.2 816 60.7
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 2.9e-303 1045.0 851 60.5
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 3.8e-303 1044.6 852 59.5
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 6.5e-303 1043.9 831 61.7
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 8.5e-303 1043.5 840 60.4
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 1.9e-302 1042.3 802 61.5
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.5e-302 1042.0 794 61.3
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 9.4e-302 1040.0 850 58.9
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 1.6e-301 1039.3 855 60.6
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 3.6e-301 1038.1 803 62.6
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 6.1e-301 1037.3 856 59.6
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 1.8e-300 1035.8 797 61.6
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 6.7e-300 1033.9 727 68.1
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 8.8e-300 1033.5 800 61.4
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 1.1e-299 1033.1 819 60.4
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 1.7e-298 1029.2 848 60.6
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.1e-297 1026.5 865 58.5
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 1.4e-297 1026.2 853 59.1
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 3.4e-296 1021.5 882 56.8
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 1.1e-294 1016.5 718 67.5
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 1.9e-294 1015.8 767 63.5
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 7.9e-293 1010.4 803 60.8
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.0e-292 1010.0 869 57.8
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.1e-291 1006.5 889 56.2
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 6.3e-290 1000.7 848 57.9
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.4e-289 999.6 776 60.2
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 3.5e-288 995.0 831 58.6
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 7.2e-286 987.3 768 60.2
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 2.3e-284 982.2 767 60.2
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.1e-283 979.9 833 58.6
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 7.4e-283 977.2 772 59.6
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 4.8e-282 974.5 752 61.4
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 1.1e-281 973.4 774 60.3
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 1.8e-281 972.6 769 59.8
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 5.3e-281 971.1 777 59.2
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 1.6e-280 969.5 810 57.2
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 1.1e-278 963.4 770 59.1
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 5.5e-278 961.1 823 57.6
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 4.7e-277 958.0 769 59.0
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 4.0e-276 954.9 779 58.2
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 4.4e-275 951.4 782 58.1
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 1.3e-274 949.9 781 58.0
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 2.2e-274 949.1 800 57.0
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 1.6e-272 943.0 850 56.2
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 6.5e-271 937.6 757 61.6
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 6.5e-271 937.6 798 57.8
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 1.8e-268 929.5 853 54.9
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 7.5e-267 924.1 846 55.8
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 3.5e-264 915.2 812 55.3
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 4.5e-264 914.8 856 54.3
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 2.0e-259 899.4 726 59.0
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 3.2e-249 865.5 806 53.7
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 2.0e-248 862.8 796 53.9
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 8.1e-237 824.3 843 50.3
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.7e-234 816.6 591 65.7
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 7.8e-232 807.7 772 52.1
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 9.6e-230 800.8 788 50.8
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 1.5e-227 793.5 820 48.7
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 3.5e-224 782.3 627 61.1
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 1.6e-221 773.5 807 46.8
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 6.6e-215 751.5 833 46.2
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 7.6e-211 738.0 434 77.4
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 5.1e-207 725.3 662 58.2
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 4.3e-206 722.2 559 64.4
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.3e-197 694.1 778 46.8
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 1.3e-197 694.1 569 59.4
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 2.7e-192 676.4 439 70.6
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 6.9e-188 661.8 663 50.4
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 7.9e-184 648.3 430 69.1
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 1.4e-172 610.9 428 66.8
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 5.0e-162 575.9 665 47.7
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 1.2e-160 571.2 861 38.3
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 3.4e-150 536.6 505 52.5
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.4e-148 531.2 474 55.1
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 2.0e-134 484.2 568 47.9
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 1.1e-124 451.8 740 37.7
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 5.4e-124 449.5 321 64.8
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 8.6e-122 442.2 271 76.0
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 4.4e-110 403.3 245 76.7
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.4e-103 380.9 297 62.3
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 6.4e-101 372.9 330 53.6
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 1.1e-97 362.1 391 49.4
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.8e-90 338.2 395 45.8
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 1.3e-88 332.0 804 32.2
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 1.1e-87 328.9 360 49.2
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 5.8e-86 323.2 352 48.6
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.2e-78 298.9 427 39.3
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 5.0e-69 266.9 202 63.4
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 4.1e-63 247.3 176 64.8
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 6.7e-58 229.9 139 74.8
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 7.0e-47 193.4 96 86.5
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 7.0e-47 193.4 166 54.8
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 2.7e-43 181.4 100 80.0
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 8.0e-43 179.9 193 48.7
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 3.7e-32 144.4 192 40.1
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 5.4e-31 140.6 95 68.4
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 4.4e-25 120.9 86 70.9
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 2.3e-21 108.6 95 57.9
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 2.3e-21 108.6 84 61.9
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 1.2e-19 102.8 78 65.4
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 1.5e-17 95.9 122 45.1
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 8.3e-16 90.1 62 66.1
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 2.4e-15 88.6 61 68.9
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 9.2e-15 86.7 72 58.3
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 5.0e-13 80.9 38 84.2
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.5e-12 79.3 37 86.5
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 4.7e-11 74.3 44 79.5
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 7.1e-07 60.5 56 48.2
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 9.2e-07 60.1 54 50.0


User provided reference genes

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