Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06151 Striga asiatica HOM05D030378 ORTHO05D399993 2.7e-166 588.6 293 100.0
SGA_v2.0_scaffold46G17441 Striga asiatica HOM05D030378 ORTHO05D399662 1.8e-24 117.5 189 40.2
SGA_v2.0_scaffold236G43768 Striga asiatica HOM05D030378 ORTHO05D400809 3.7e-22 109.8 109 54.1
SGA_v2.0_scaffold147G36320 Striga asiatica HOM05D000390 ORTHO05D001192 1.2e-17 94.7 72 62.5
SGA_v2.0_scaffold147G36325 Striga asiatica HOM05D000390 ORTHO05D001192 5.1e-16 89.4 114 42.1
SGA_v2.0_scaffold21G09373 Striga asiatica HOM05D030378 ORTHO05D400831 2.9e-11 73.6 100 43.0
Migut.H00260 Erythranthe guttata HOM05D000390 ORTHO05D001192 3.2e-10 70.1 72 44.4
RcHm_v2.0_Chr3g0493571 Rosa chinensis HOM05D000390 ORTHO05D001192 5.5e-10 69.3 78 46.2
SGA_v2.0_scaffold329G48863 Striga asiatica HOM05D000390 ORTHO05D001192 5.5e-10 69.3 66 47.0
Ciclev10012174m.g Citrus clementina HOM05D000390 ORTHO05D001192 1.6e-09 67.8 70 44.3
FAN23G1779 Fragaria x ananassa HOM05D000390 ORTHO05D001192 2.1e-09 67.4 78 44.9
FAN26G2380 Fragaria x ananassa HOM05D000390 ORTHO05D001192 4.7e-09 66.2 74 45.9
FvH4_1g29100 Fragaria vesca HOM05D000390 ORTHO05D001192 7.9e-09 65.5 78 44.9
HanXRQChr11g0325251 Helianthus annuus HOM05D000390 ORTHO05D001192 1.4e-08 64.7 72 38.9
Prupe.3G152000 Prunus persica HOM05D000390 ORTHO05D001192 3.0e-08 63.5 70 44.3
MD09G1260200 Malus domestica HOM05D000390 ORTHO05D001192 3.9e-08 63.2 70 45.7
MSTRG.3531 Avicennia marina HOM05D000390 ORTHO05D001192 5.1e-08 62.8 101 32.7
DCAR_025881 Daucus carota HOM05D000390 ORTHO05D001192 5.1e-08 62.8 70 40.0
vmacro18054 Vaccinium macrocarpon HOM05D000390 ORTHO05D001192 5.1e-08 62.8 70 41.4
Haze_14210 Corylus avellana HOM05D000390 ORTHO05D001192 6.7e-08 62.4 71 39.4
TWI63G0760 Tripterygium wilfordii HOM05D000390 ORTHO05D001192 6.7e-08 62.4 67 41.8
Potri.017G148100 Populus trichocarpa HOM05D000390 ORTHO05D001192 1.5e-07 61.2 70 41.4
vmacro05497 Vaccinium macrocarpon HOM05D000390 ORTHO05D001192 2.0e-07 60.8 70 40.0
AT1G66630 Arabidopsis thaliana HOM05D000390 ORTHO05D001192 2.6e-07 60.5 66 37.9
TWI53G1674 Tripterygium wilfordii HOM05D000390 ORTHO05D001192 2.6e-07 60.5 72 41.7
Peaxi162Scf00104g01920 Petunia axillaris HOM05D000390 ORTHO05D001192 3.3e-07 60.1 118 30.5
RcHm_v2.0_Chr6g0252861 Rosa chinensis HOM05D000390 ORTHO05D001192 3.3e-07 60.1 65 44.6
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 3.3e-07 60.1 70 40.0
Sabra17G0123800 Salix brachista HOM05D000390 ORTHO05D001192 5.7e-07 59.3 70 40.0
TWI63G0436 Tripterygium wilfordii HOM05D000390 ORTHO05D001192 7.4e-07 58.9 67 40.3
Atru.chr1.1773 Acer truncatum HOM05D000390 ORTHO05D001192 9.7e-07 58.5 68 39.7
MBI10_g07288_MAGBIO Magnolia biondii HOM05D000390 ORTHO05D001192 1.3e-06 58.2 114 28.1
Rhsim08G0085400 Rhododendron simsii HOM05D000390 ORTHO05D001192 1.3e-06 58.2 70 38.6
SGA_v2.0_scaffold51G18836 Striga asiatica HOM05D000390 ORTHO05D001192 1.3e-06 58.2 71 39.4
BcaB03g15261 Brassica carinata HOM05D000390 ORTHO05D001192 1.7e-06 57.8 127 26.8
Rhsim08G0084700 Rhododendron simsii HOM05D000390 ORTHO05D001192 1.7e-06 57.8 66 39.4
Thecc.04G123400 Theobroma cacao HOM05D000390 ORTHO05D001192 1.7e-06 57.8 66 40.9
Actinidia15920 Actinidia chinensis HOM05D000390 ORTHO05D001192 2.2e-06 57.4 71 38.0
Actinidia36360 Actinidia chinensis HOM05D000390 ORTHO05D001192 2.2e-06 57.4 71 38.0
C06p39870 Brassica napus HOM05D000390 ORTHO05D001192 2.2e-06 57.4 100 33.0
Carub.0007s3314 Capsella rubella HOM05D000390 ORTHO05D001192 2.2e-06 57.4 69 42.0
Cpa.g.sc116.14 Carica papaya HOM05D007651 ORTHO05D001192 2.2e-06 57.4 67 40.3
VMungo0251G2516 Vigna mungo HOM05D000390 ORTHO05D001192 2.2e-06 57.4 70 40.0
CiPaw.04G045400 Carya illinoinensis HOM05D007651 ORTHO05D001192 2.8e-06 57.0 67 40.3
CiPaw.15G020600 Carya illinoinensis HOM05D007651 ORTHO05D001192 2.8e-06 57.0 67 40.3
DCAR_010733 Daucus carota HOM05D000390 ORTHO05D001192 2.8e-06 57.0 70 41.4
Sed0004721 Sechium edule HOM05D000390 ORTHO05D001192 2.8e-06 57.0 72 43.1
TPR.G23821 Trifolium pratense HOM05D000390 ORTHO05D001192 2.8e-06 57.0 70 38.6
Manes.02G074100 Manihot esculenta HOM05D000390 ORTHO05D001192 3.7e-06 56.6 70 38.6
Oeu000896.1 Olea europaea HOM05D000390 ORTHO05D001192 3.7e-06 56.6 70 38.6
PSO478G2442 Papaver somniferum HOM05D000390 ORTHO05D001192 3.7e-06 56.6 70 38.6
Rhsim10G0078700 Rhododendron simsii HOM05D000390 ORTHO05D001192 3.7e-06 56.6 79 38.0
Ciclev10013760m.g Citrus clementina HOM05D007651 ORTHO05D001192 4.8e-06 56.2 78 39.7
Oeu047424.1 Olea europaea HOM05D000390 ORTHO05D001192 4.8e-06 56.2 70 38.6
Psat7g094040 Pisum sativum HOM05D000390 ORTHO05D001192 4.8e-06 56.2 70 38.6
Prupe.8G145500 Prunus persica HOM05D000390 ORTHO05D001192 4.8e-06 56.2 121 27.3
Rhsim08G0085200 Rhododendron simsii HOM05D000390 ORTHO05D001192 4.8e-06 56.2 70 35.7
Phvul.002G201000 Phaseolus vulgaris HOM05D000390 ORTHO05D001192 6.3e-06 55.8 70 38.6
SGA_v2.0_scaffold49G18139 Striga asiatica HOM05D000390 ORTHO05D001192 6.3e-06 55.8 66 39.4
Carub.0005s1231 Capsella rubella HOM05D000390 ORTHO05D001192 8.2e-06 55.5 66 37.9
CAN.G11.17 Capsicum annuum HOM05D000390 ORTHO05D001192 8.2e-06 55.5 124 30.6
Cc07_g08260 Coffea canephora HOM05D000390 ORTHO05D001192 8.2e-06 55.5 82 40.2
PSO017G0644 Papaver somniferum HOM05D000390 ORTHO05D001192 8.2e-06 55.5 70 37.1


User provided reference genes

Program Settings