Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 0.0e+00 1095.5 580 100.0
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 1.2e-237 826.6 574 76.1
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 1.9e-195 686.4 583 66.0
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 9.3e-195 684.1 596 63.9
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 1.7e-151 540.4 569 53.6
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 5.9e-141 505.4 601 52.4
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 2.2e-135 486.9 614 49.7
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 5.4e-134 482.3 618 46.9
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 3.5e-133 479.6 608 48.4
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 1.6e-130 470.7 602 47.3
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 2.1e-130 470.3 602 47.3
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.4e-129 467.6 617 46.7
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 3.6e-122 443.0 568 48.8
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 1.5e-120 437.6 568 46.8
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 1.5e-120 437.6 573 45.7
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 1.3e-119 434.5 573 45.2
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.9e-119 433.3 574 47.0
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 3.7e-119 433.0 571 48.0
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 3.7e-119 433.0 549 50.1
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 3.7e-119 433.0 573 46.4
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.9e-119 432.6 574 46.5
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 4.9e-119 432.6 575 47.1
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 1.1e-118 431.4 622 44.5
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 1.1e-118 431.4 574 49.0
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.4e-118 431.0 566 48.2
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.4e-118 431.0 565 44.1
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.2e-117 427.9 574 47.2
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 2.1e-117 427.2 584 48.1
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 2.1e-117 427.2 547 48.1
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 3.5e-117 426.4 563 46.4
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 6.0e-117 425.6 566 45.6
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 6.0e-117 425.6 595 45.9
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 6.0e-117 425.6 543 46.4
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 7.8e-117 425.2 569 48.5
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 7.8e-117 425.2 573 46.8
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 1.7e-116 424.1 582 46.6
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 3.9e-116 422.9 565 45.7
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 1.1e-115 421.4 575 46.4
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 2.5e-115 420.2 554 50.2
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 4.3e-115 419.5 575 45.9
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 5.6e-115 419.1 568 45.6
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 7.3e-115 418.7 581 46.5
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.3e-115 418.7 544 49.6
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 1.6e-114 417.5 569 45.9
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.8e-114 416.8 569 44.6
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 3.6e-114 416.4 613 44.4
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.1e-113 414.8 579 46.5
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 1.1e-113 414.8 570 46.3
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 1.4e-113 414.5 569 48.3
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 2.4e-113 413.7 546 49.1
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 4.0e-113 412.9 569 45.7
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 6.8e-113 412.1 552 47.1
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 1.2e-112 411.4 566 45.1
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 1.5e-112 411.0 575 46.6
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 2.0e-112 410.6 571 49.0
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 3.4e-112 409.8 568 46.7
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 3.4e-112 409.8 575 44.0
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 5.8e-112 409.1 571 48.0
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.3e-111 407.9 559 48.1
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 1.7e-111 407.5 563 45.6
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.2e-111 407.1 550 49.1
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 2.9e-111 406.8 573 46.1
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.1e-110 404.8 547 48.4
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 1.4e-110 404.4 538 44.8
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 1.4e-110 404.4 547 48.4
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 3.2e-110 403.3 572 46.2
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 5.4e-110 402.5 569 47.5
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 4.6e-109 399.4 557 45.2
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 8.7e-108 395.2 622 41.6
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 7.3e-107 392.1 571 45.0
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 2.8e-106 390.2 557 43.3
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.4e-105 387.9 578 42.7
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 2.4e-105 387.1 577 41.6
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 6.9e-105 385.6 575 42.1
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 1.2e-104 384.8 567 44.6
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 1.2e-104 384.8 281 66.9
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 3.4e-104 383.3 556 45.5
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 1.7e-103 380.9 557 42.9
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 2.9e-103 380.2 583 42.9
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 2.9e-103 380.2 550 44.0
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 4.9e-103 379.4 570 43.2
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 8.4e-103 378.6 551 43.9
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 8.4e-103 378.6 577 43.0
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 8.4e-103 378.6 600 41.5
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 8.4e-103 378.6 572 45.1
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 1.4e-102 377.9 551 44.5
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 4.2e-102 376.3 551 43.7
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 5.4e-102 375.9 569 40.9
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 2.7e-101 373.6 575 42.8
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.3e-98 364.8 548 44.0
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 1.1e-97 361.7 574 43.4
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 3.2e-94 350.1 580 42.1
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 5.4e-94 349.4 569 43.8
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 1.6e-93 347.8 573 39.1
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 2.3e-92 344.0 532 44.9
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 1.1e-91 341.7 564 41.3
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 9.6e-91 338.6 567 41.1
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.3e-90 338.2 494 44.9
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.0e-89 333.2 446 43.5
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 3.4e-88 330.1 504 42.5
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 1.7e-87 327.8 309 55.3
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 2.2e-87 327.4 593 39.6
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 2.5e-83 313.9 588 38.1
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 7.4e-83 312.4 578 39.8
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 9.6e-83 312.0 656 35.2
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 6.2e-82 309.3 303 53.1
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 4.1e-81 306.6 577 40.0
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 1.5e-80 304.7 483 40.2
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 2.0e-80 304.3 548 40.5
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 2.6e-80 303.9 545 42.6
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 3.2e-78 297.0 554 37.7
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 7.9e-77 292.4 518 39.4
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 1.0e-76 292.0 732 32.7
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 6.9e-73 279.3 375 44.8
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 6.5e-71 272.7 542 37.1
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 3.0e-68 263.8 642 32.7
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 4.8e-66 256.5 553 34.4
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 7.4e-59 232.6 458 36.2
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 1.2e-56 225.3 545 32.8
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 4.2e-54 216.9 500 36.6
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.6e-53 214.9 520 32.3
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 3.3e-51 207.2 235 50.2
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 6.3e-50 203.0 674 27.6
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 5.3e-49 199.9 434 37.8
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 9.1e-49 199.1 472 31.6
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 3.5e-48 197.2 163 59.5
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 1.7e-47 194.9 685 27.0
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 3.7e-34 150.6 309 31.7
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 3.1e-33 147.5 497 25.4
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 3.5e-32 144.1 177 50.3
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 3.8e-31 140.6 166 46.4
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.3e-30 137.5 581 26.2
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 1.0e-28 132.5 224 33.5
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 1.3e-26 125.6 125 58.4
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 2.2e-26 124.8 131 51.9
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 1.4e-25 122.1 164 50.0
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 1.6e-21 108.6 245 32.2
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 8.0e-21 106.3 125 53.6
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 1.4e-20 105.5 80 67.5
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 6.4e-18 96.7 187 32.6
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 4.1e-17 94.0 85 56.5
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.1e-17 94.0 85 56.5
Cfa026542 Carpinus fangiana HOM05D005537 ORTHO05D124841 3.3e-06 57.8 116 37.1


User provided reference genes

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