Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 7.8e-170 600.5 335 100.0
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 1.2e-80 304.3 331 65.0
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 4.6e-77 292.4 337 61.1
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 1.9e-75 287.0 313 60.4
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 2.1e-66 256.9 361 51.0
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 5.8e-64 248.8 359 51.5
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 2.2e-63 246.9 267 55.8
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 4.9e-63 245.7 329 52.3
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 3.0e-60 236.5 246 66.3
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 1.2e-58 231.1 366 47.3
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 1.6e-58 230.7 313 54.3
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 6.2e-58 228.8 342 50.9
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 1.4e-57 227.6 357 48.7
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 2.4e-57 226.9 366 46.7
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 2.4e-57 226.9 300 51.3
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 4.0e-57 226.1 312 46.8
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 6.9e-57 225.3 294 53.4
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 9.0e-57 224.9 324 45.4
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 1.2e-56 224.6 343 49.3
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 1.2e-56 224.6 305 56.7
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 2.0e-56 223.8 308 49.4
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 2.6e-56 223.4 308 53.2
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 3.8e-55 219.5 291 46.7
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 4.9e-55 219.2 308 49.4
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 4.9e-55 219.2 328 51.8
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 6.4e-55 218.8 328 51.8
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.9e-54 217.2 328 50.3
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 2.4e-54 216.9 332 44.6
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 2.4e-54 216.9 332 50.6
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 4.2e-54 216.1 276 50.7
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 4.2e-54 216.1 177 66.7
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.6e-53 214.2 177 66.7
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 2.1e-53 213.8 175 64.0
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 2.1e-53 213.8 322 44.4
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 2.1e-53 213.8 178 65.2
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 4.6e-53 212.6 174 64.4
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 4.6e-53 212.6 174 64.4
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 4.6e-53 212.6 174 64.4
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 6.0e-53 212.2 308 47.4
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 6.0e-53 212.2 174 64.9
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 6.0e-53 212.2 339 46.0
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 7.8e-53 211.8 173 64.2
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 7.8e-53 211.8 176 64.2
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 1.3e-52 211.1 368 43.2
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 1.7e-52 210.7 313 48.6
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 3.9e-52 209.5 135 79.3
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 5.1e-52 209.1 308 46.8
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 6.6e-52 208.8 180 65.0
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 8.7e-52 208.4 173 63.6
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 1.1e-51 208.0 175 63.4
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 1.9e-51 207.2 173 63.0
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 2.5e-51 206.8 361 47.4
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 4.3e-51 206.1 350 42.9
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.3e-50 204.5 264 50.4
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 1.3e-50 204.5 173 61.8
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 2.8e-50 203.4 307 45.3
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 4.8e-50 202.6 304 45.7
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 6.2e-50 202.2 133 78.9
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 2.4e-49 200.3 331 50.8
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 2.4e-49 200.3 376 44.1
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 2.4e-49 200.3 383 46.2
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 3.1e-49 199.9 173 61.8
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 2.0e-48 197.2 238 50.0
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 2.0e-48 197.2 176 60.8
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 4.5e-48 196.1 176 61.4
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 4.5e-48 196.1 136 75.0
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 7.6e-48 195.3 164 64.6
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 7.6e-48 195.3 164 64.6
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 7.6e-48 195.3 178 60.1
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 9.9e-48 194.9 135 76.3
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 8.4e-47 191.8 156 67.9
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 1.1e-46 191.4 158 65.8
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 3.2e-46 189.9 135 73.3
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 4.2e-46 189.5 165 63.0
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 4.2e-46 189.5 174 61.5
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 2.7e-45 186.8 320 41.2
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 2.7e-45 186.8 176 60.8
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.7e-45 186.8 176 60.8
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 6.0e-45 185.7 123 76.4
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 7.9e-45 185.3 172 59.9
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 7.9e-45 185.3 174 61.5
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 1.8e-44 184.1 168 60.7
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 5.1e-44 182.6 135 70.4
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 5.1e-44 182.6 130 74.6
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 6.7e-44 182.2 175 57.7
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 6.7e-44 182.2 179 57.0
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 9.6e-43 178.3 133 70.7
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 1.6e-42 177.6 312 48.1
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 3.7e-42 176.4 123 76.4
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 6.2e-42 175.6 133 69.2
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.4e-41 173.7 164 61.0
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 4.0e-41 172.9 134 66.4
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 4.0e-41 172.9 162 61.1
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.0e-40 170.6 164 60.4
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 4.5e-40 169.5 159 61.6
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 5.8e-40 169.1 104 81.7
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 7.6e-40 168.7 201 52.7
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 2.4e-38 163.7 117 72.6
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 9.6e-35 151.8 124 69.4
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 1.8e-33 147.5 136 59.6
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 3.1e-33 146.7 132 59.8
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 1.2e-32 144.8 142 57.0
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 2.0e-32 144.1 277 37.9
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 2.9e-31 140.2 126 60.3
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 9.3e-30 135.2 139 55.4
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 9.3e-30 135.2 139 55.4
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 1.6e-29 134.4 132 56.8
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.1e-25 121.7 109 63.3
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 5.9e-24 115.9 135 48.9
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 5.9e-24 115.9 246 41.9
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 5.0e-23 112.8 71 78.9
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 3.2e-22 110.2 64 85.9
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 1.2e-21 108.2 112 56.2
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 1.6e-21 107.8 136 47.1
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 5.3e-17 92.8 73 67.1
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 5.1e-12 76.3 106 47.2
SGA_v2.0_scaffold94G28651 Striga asiatica HOM05D001373 ORTHO05D007623 8.8e-12 75.5 109 42.2
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.6e-11 73.9 51 72.5
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 3.7e-10 70.1 39 84.6
arahy.Tifrunner.gnm1.ann1.24L57E Arachis hypogaea HOM05D006300 ORTHO05D007623 1.1e-09 68.6 76 55.3
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 1.1e-09 68.6 105 41.9
SGA_v2.0_scaffold275G46532 Striga asiatica HOM05D001373 ORTHO05D001330 1.3e-07 61.6 81 42.0


User provided reference genes

Program Settings