Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold122G33226 Striga asiatica HOM05D008047 ORTHO05D009832 1.8e-81 305.8 154 100.0
MSTRG.9235 Avicennia marina HOM05D008047 ORTHO05D009832 3.4e-27 125.6 119 55.5
SGA_v2.0_scaffold286G47135 Striga asiatica HOM05D008047 ORTHO05D009832 1.7e-26 123.2 122 56.6
Migut.F02078 Erythranthe guttata HOM05D008047 ORTHO05D009832 4.9e-26 121.7 138 50.7
Oeu034726.1 Olea europaea HOM05D008047 ORTHO05D009832 7.1e-25 117.9 141 46.8
SalBow3G4242 Salvia bowleyana HOM05D008047 ORTHO05D009832 4.8e-21 105.1 99 50.5
GSVIVG01032956001 Vitis vinifera HOM05D008047 ORTHO05D009832 1.1e-20 104.0 130 50.0
Haze_14960 Corylus avellana HOM05D008047 ORTHO05D009832 2.9e-18 95.9 140 41.4
Glyma.16G148900 Glycine max HOM05D008047 ORTHO05D009832 3.8e-18 95.5 135 43.7
Cfa007157 Carpinus fangiana HOM05D008047 ORTHO05D009832 6.4e-18 94.7 128 43.0
Eucgr.I01575 Eucalyptus grandis HOM05D008047 ORTHO05D009832 1.1e-17 94.0 134 42.5
Rhsim08G0038000 Rhododendron simsii HOM05D008047 ORTHO05D009832 1.1e-17 94.0 148 37.8
TWI32G1069 Tripterygium wilfordii HOM05D008047 ORTHO05D009832 3.2e-17 92.4 141 41.1
Medtr4g011070 Medicago truncatula HOM05D008047 ORTHO05D009832 4.2e-17 92.0 133 39.8
Ah.02g128750 Amaranthus hybridus HOM05D000154 ORTHO05D000092 9.3e-17 90.9 135 41.5
Gohir.D04G073100 Gossypium hirsutum HOM05D008047 ORTHO05D009832 9.3e-17 90.9 152 40.1
Gorai.012G082400 Gossypium raimondii HOM05D008047 ORTHO05D009832 9.3e-17 90.9 152 40.1
Thecc.04G050500 Theobroma cacao HOM05D008047 ORTHO05D009832 9.3e-17 90.9 87 52.9
QL02p068705 Quercus lobata HOM05D008047 ORTHO05D009832 1.6e-16 90.1 144 44.4
FvH4_6g54420 Fragaria vesca HOM05D008047 ORTHO05D009832 2.1e-16 89.7 117 45.3
FAN09G0295 Fragaria x ananassa HOM05D008047 ORTHO05D009832 2.1e-16 89.7 117 45.3
Gohir.A05G333400 Gossypium hirsutum HOM05D000489 ORTHO05D009832 2.1e-16 89.7 152 40.1
FAN05G0159 Fragaria x ananassa HOM05D008047 ORTHO05D009832 2.7e-16 89.4 136 44.1
EL10Ac6g13897 Beta vulgaris HOM05D001858 ORTHO05D009832 4.6e-16 88.6 136 41.2
FAN14G5573 Fragaria x ananassa HOM05D000154 ORTHO05D000092 4.6e-16 88.6 96 47.9
Phvul.004G068800 Phaseolus vulgaris HOM05D008047 ORTHO05D009832 4.6e-16 88.6 110 45.5
TAR622G0472 Trochodendron aralioides HOM05D008047 ORTHO05D009832 4.6e-16 88.6 122 40.2
CARHR199530 Cardamine hirsuta HOM05D008047 ORTHO05D009832 1.0e-15 87.4 134 37.3
Prupe.3G314800 Prunus persica HOM05D008047 ORTHO05D009832 1.0e-15 87.4 99 51.5
FAN09G4097 Fragaria x ananassa HOM05D008047 ORTHO05D009832 1.3e-15 87.0 117 45.3
MD17G1004800 Malus domestica HOM05D008047 ORTHO05D009832 1.3e-15 87.0 112 45.5
ECA232G1047 Erigeron canadensis HOM05D008047 ORTHO05D009832 3.0e-15 85.9 122 39.3
Lj5g0012387 Lotus japonicus HOM05D008047 ORTHO05D009832 3.0e-15 85.9 142 41.5
Ciclev10018048m.g Citrus clementina HOM05D008047 ORTHO05D009832 5.1e-15 85.1 128 41.4
Lsat_1_v5_gn_4_185720 Lactuca sativa HOM05D008047 ORTHO05D009832 5.1e-15 85.1 84 52.4
RcHm_v2.0_Chr2g0176671 Rosa chinensis HOM05D008047 ORTHO05D009832 6.6e-15 84.7 103 48.5
Atru.chr6.2719 Acer truncatum HOM05D008047 ORTHO05D009832 8.7e-15 84.3 107 43.0
HanXRQChr09g0255591 Helianthus annuus HOM05D008047 ORTHO05D009832 1.1e-14 84.0 91 49.5
Psat7g255760 Pisum sativum HOM05D008047 ORTHO05D009832 1.1e-14 84.0 129 40.3
Sc07g0003900 Simmondsia chinensis HOM05D008047 ORTHO05D009832 1.5e-14 83.6 134 40.3
TPR.G7287 Trifolium pratense HOM05D008047 ORTHO05D009832 1.5e-14 83.6 142 38.0
Cpa.g.sc70.44 Carica papaya HOM05D008047 ORTHO05D009832 2.5e-14 82.8 119 39.5
Nitab4.5_0008306g0030 Nicotiana tabacum HOM05D008047 ORTHO05D009832 2.5e-14 82.8 144 38.2
VMungo0464G1119 Vigna mungo HOM05D008047 ORTHO05D009832 2.5e-14 82.8 112 42.0
Manes.04G094800 Manihot esculenta HOM05D008047 ORTHO05D009832 3.3e-14 82.4 139 41.7
FAN02G1422 Fragaria x ananassa HOM05D008047 ORTHO05D009832 4.3e-14 82.0 103 46.6
Cc05_g15210 Coffea canephora HOM05D008047 ORTHO05D009832 7.3e-14 81.3 101 44.6
Hund04128 Selenicereus undatus HOM05D008047 ORTHO05D009832 7.3e-14 81.3 115 42.6
Nn3g16226 Nelumbo nucifera HOM05D008047 ORTHO05D009832 1.3e-13 80.5 141 38.3
A02p02240 Brassica napus HOM05D000233 ORTHO05D009832 1.6e-13 80.1 124 37.1
CsaV3_3G020010 Cucumis sativus L. HOM05D000489 ORTHO05D009832 2.1e-13 79.7 131 36.6
DCAR_014455 Daucus carota HOM05D008047 ORTHO05D009832 2.1e-13 79.7 117 41.0
Lj7P618T36 Lonicera japonica HOM05D008047 ORTHO05D009832 2.8e-13 79.3 86 48.8
Potri.013G131500 Populus trichocarpa HOM05D008047 ORTHO05D009832 3.6e-13 79.0 131 43.5
BcaNung04178 Brassica carinata HOM05D000233 ORTHO05D009832 6.2e-13 78.2 110 40.0
C02p06480 Brassica napus HOM05D000233 ORTHO05D009832 6.2e-13 78.2 122 39.3
BolC2t06594H Brassica oleracea HOM05D000233 ORTHO05D009832 6.2e-13 78.2 122 39.3
ClCG05G012510 Citrullus lanatus HOM05D008047 ORTHO05D009832 6.2e-13 78.2 101 42.6
Sp6g30100 Schrenkiella parvula HOM05D008047 ORTHO05D009832 6.2e-13 78.2 123 41.5
A10p24460 Brassica napus HOM05D000233 ORTHO05D009832 8.1e-13 77.8 126 34.9
BraA10t44511Z Brassica rapa HOM05D000233 ORTHO05D009832 8.1e-13 77.8 126 34.9
AUR62017473 Chenopodium quinoa HOM05D001858 ORTHO05D009832 8.1e-13 77.8 138 36.2
Nitab4.5_0003120g0010 Nicotiana tabacum HOM05D008047 ORTHO05D009832 8.1e-13 77.8 112 36.6
THA.LOC104822430 Tarenaya hassleriana HOM05D008047 ORTHO05D009832 1.4e-12 77.0 108 37.0
Aa31LG11G15460 Aethionema arabicum HOM05D008047 ORTHO05D009832 1.8e-12 76.6 125 36.0
AT5G13900 Arabidopsis thaliana HOM05D008047 ORTHO05D009832 3.1e-12 75.9 138 32.6
BcaC04g24244 Brassica carinata HOM05D000233 ORTHO05D009832 5.3e-12 75.1 138 34.8
AL6G24550 Arabidopsis lyrata HOM05D008047 ORTHO05D009832 6.9e-12 74.7 139 33.1
MELO3C014762.2 Cucumis melo HOM05D000489 ORTHO05D009832 6.9e-12 74.7 110 38.2
CANSAT64G2909 Cannabis sativa HOM05D008047 ORTHO05D009832 1.2e-11 73.9 124 40.3
Solyc01g103060.4 Solanum lycopersicum HOM05D008047 ORTHO05D009832 1.5e-11 73.6 92 40.2
MBI04_g15075_MAGBIO Magnolia biondii HOM05D000489 ORTHO05D009832 2.0e-11 73.2 107 37.4
MBI04_g47855_MAGBIO Magnolia biondii HOM05D000489 ORTHO05D009832 2.0e-11 73.2 107 37.4
PGSC0003DMG400020710 Solanum tuberosum HOM05D008047 ORTHO05D009832 2.6e-11 72.8 81 43.2
Sabra13G0111000 Salix brachista HOM05D008047 ORTHO05D009832 4.5e-11 72.0 138 39.1
Thhalv10014913m.g Eutrema salsugineum HOM05D008047 ORTHO05D009832 7.6e-11 71.2 134 32.8
BcaC04g19068 Brassica carinata HOM05D000233 ORTHO05D009832 1.3e-10 70.5 117 38.5
PGR142G1223 Punica granatum HOM05D008047 ORTHO05D009832 1.3e-10 70.5 110 39.1
CAN.G855.49 Capsicum annuum HOM05D008047 ORTHO05D009832 1.7e-10 70.1 148 30.4
Nitab4.5_0004668g0080 Nicotiana tabacum HOM05D008047 ORTHO05D009832 2.9e-10 69.3 97 42.3
Peaxi162Scf00011g01846 Petunia axillaris HOM05D008047 ORTHO05D009832 6.4e-10 68.2 97 38.1
PGR142G2733 Punica granatum HOM05D008047 ORTHO05D009832 6.4e-10 68.2 109 39.4
AUR62042859 Chenopodium quinoa HOM05D008047 ORTHO05D009832 1.4e-09 67.0 111 38.7
Nn3g16225 Nelumbo nucifera HOM05D008047 ORTHO05D009832 2.7e-08 62.8 114 36.8
SEGI_06211 Sequoiadendron giganteum HOM05D001858 ORTHO05D001838 6.0e-08 61.6 150 33.3
DCAR_024172 Daucus carota HOM05D000489 ORTHO05D000372 1.8e-07 60.1 157 33.1
Phvul.003G217100 Phaseolus vulgaris HOM05D001858 ORTHO05D001838 1.8e-07 60.1 107 36.4
AUR62028596 Chenopodium quinoa HOM05D000489 ORTHO05D000372 2.3e-07 59.7 127 31.5
Atru.chr4.2435 Acer truncatum HOM05D000489 ORTHO05D000372 3.0e-07 59.3 116 34.5
CSS0048801 Camellia sinensis var. sinensis HOM05D008047 ORTHO05D009832 3.0e-07 59.3 68 48.5
Rhsim02G0026700 Rhododendron simsii HOM05D000489 ORTHO05D000372 3.0e-07 59.3 91 37.4
EL10Ac5g10539 Beta vulgaris HOM05D000489 ORTHO05D000372 3.9e-07 58.9 159 31.4
Thecc.01G274900 Theobroma cacao HOM05D000489 ORTHO05D000372 5.1e-07 58.5 108 36.1
FAN08G1163 Fragaria x ananassa HOM05D001858 ORTHO05D001838 8.7e-07 57.8 131 33.6
PSO478G1745 Papaver somniferum HOM05D008047 ORTHO05D009832 8.7e-07 57.8 58 51.7
CANSAT78G1938 Cannabis sativa HOM05D000489 ORTHO05D000372 1.1e-06 57.4 138 32.6
DCAR_002376 Daucus carota HOM05D000489 ORTHO05D000372 1.1e-06 57.4 106 34.0
FvH4_5g00460 Fragaria vesca HOM05D001858 ORTHO05D001838 1.1e-06 57.4 130 33.8
Thecc.04G234800 Theobroma cacao HOM05D000489 ORTHO05D000372 1.1e-06 57.4 153 33.3
CSS0041056 Camellia sinensis var. sinensis HOM05D000489 ORTHO05D000372 1.5e-06 57.0 124 33.9
MELO3C012661.2 Cucumis melo HOM05D000489 ORTHO05D000372 1.5e-06 57.0 106 34.0
Oeu052359.2 Olea europaea HOM05D000489 ORTHO05D000372 1.5e-06 57.0 108 32.4
Peaxi162Scf00402g00511 Petunia axillaris HOM05D000489 ORTHO05D000372 1.5e-06 57.0 100 35.0
SEGI_28568 Sequoiadendron giganteum HOM05D001858 ORTHO05D001838 1.5e-06 57.0 154 31.2
VMungo1383G0717 Vigna mungo HOM05D000489 ORTHO05D000372 1.5e-06 57.0 132 32.6
Cpa.g.sc52.55 Carica papaya HOM05D000489 ORTHO05D000372 1.9e-06 56.6 156 29.5
FAN24G1682 Fragaria x ananassa HOM05D000489 ORTHO05D000372 1.9e-06 56.6 117 32.5
Medtr7g095230 Medicago truncatula HOM05D000489 ORTHO05D000372 1.9e-06 56.6 172 25.6
FAN18G0727 Fragaria x ananassa HOM05D001858 ORTHO05D001838 2.5e-06 56.2 85 37.6
Lalb_Chr01g0017021 Lupinus albus HOM05D000489 ORTHO05D000372 2.5e-06 56.2 130 30.0
TAR633G0877 Trochodendron aralioides HOM05D000489 ORTHO05D000372 2.5e-06 56.2 98 35.7
AUR62028597 Chenopodium quinoa HOM05D003852 ORTHO05D003095 3.3e-06 55.8 69 40.6
AUR62032324 Chenopodium quinoa HOM05D000489 ORTHO05D000372 3.3e-06 55.8 69 40.6
FvH4_4g16110 Fragaria vesca HOM05D000489 ORTHO05D000372 3.3e-06 55.8 162 29.0
FAN12G1589 Fragaria x ananassa HOM05D000489 ORTHO05D000372 3.3e-06 55.8 162 29.0
Gorai.007G138700 Gossypium raimondii HOM05D000489 ORTHO05D000372 3.3e-06 55.8 110 32.7
Nn4g26343 Nelumbo nucifera HOM05D001858 ORTHO05D001838 3.3e-06 55.8 133 28.6
Rhsim13G0026800 Rhododendron simsii HOM05D000489 ORTHO05D000372 3.3e-06 55.8 104 32.7
Ca_08616_v3 Cicer arietinum L. HOM05D000489 ORTHO05D000372 4.3e-06 55.5 132 28.0
Ca_08624_v3 Cicer arietinum L. HOM05D000489 ORTHO05D000372 4.3e-06 55.5 132 28.0
FAN07G1345 Fragaria x ananassa HOM05D000489 ORTHO05D000372 4.3e-06 55.5 162 29.0
HanXRQChr15g0493031 Helianthus annuus HOM05D000489 ORTHO05D000372 4.3e-06 55.5 101 32.7
Oeu023615.1 Olea europaea HOM05D000489 ORTHO05D000372 4.3e-06 55.5 97 34.0
Oeu025744.1 Olea europaea HOM05D000489 ORTHO05D000372 4.3e-06 55.5 104 36.5
TWI18G0704 Tripterygium wilfordii HOM05D000489 ORTHO05D000372 4.3e-06 55.5 119 31.1
TAR633G0260 Trochodendron aralioides HOM05D000489 ORTHO05D000372 4.3e-06 55.5 98 35.7
vmacro02593 Vaccinium macrocarpon HOM05D000489 ORTHO05D000372 4.3e-06 55.5 99 33.3
Atru.chr4.2436 Acer truncatum HOM05D000489 ORTHO05D000372 5.6e-06 55.1 146 27.4
Atru.ctg752_3.51 Acer truncatum HOM05D000489 ORTHO05D000372 5.6e-06 55.1 146 27.4
Aa31LG1G9420 Aethionema arabicum HOM05D000489 ORTHO05D000372 5.6e-06 55.1 101 35.6
CSS0028459 Camellia sinensis var. sinensis HOM05D000489 ORTHO05D000372 5.6e-06 55.1 124 33.1
FAN17G1366 Fragaria x ananassa HOM05D000489 ORTHO05D000372 5.6e-06 55.1 162 29.0
Gohir.A11G124500 Gossypium hirsutum HOM05D000489 ORTHO05D000372 5.6e-06 55.1 110 33.6
Gohir.D11G129700 Gossypium hirsutum HOM05D000489 ORTHO05D000372 5.6e-06 55.1 110 32.7
Medtr1g071730 Medicago truncatula HOM05D000489 ORTHO05D000372 5.6e-06 55.1 138 30.4
Potri.005G211900 Populus trichocarpa HOM05D000489 ORTHO05D000372 5.6e-06 55.1 128 30.5
AUR62027275 Chenopodium quinoa HOM05D001858 ORTHO05D001838 7.4e-06 54.7 96 35.4
Ciclev10006599m.g Citrus clementina HOM05D000489 ORTHO05D000372 7.4e-06 54.7 154 27.9
DCAR_030662 Daucus carota HOM05D000489 ORTHO05D000372 7.4e-06 54.7 145 31.7
Dinv14010 Davidia involucrata HOM05D000489 ORTHO05D000372 7.4e-06 54.7 129 29.5
Duzib133G0364 Durio zibethinus HOM05D000489 ORTHO05D000372 7.4e-06 54.7 109 33.9
Eucgr.H03439 Eucalyptus grandis HOM05D000489 ORTHO05D000372 7.4e-06 54.7 118 30.5
FvH4_2g23211 Fragaria vesca HOM05D000489 ORTHO05D000372 7.4e-06 54.7 118 32.2
Medtr1g103470 Medicago truncatula HOM05D000489 ORTHO05D000372 7.4e-06 54.7 110 33.6
PSO017G1597 Papaver somniferum HOM05D008047 ORTHO05D009832 7.4e-06 54.7 58 48.3
RcHm_v2.0_Chr6g0290491 Rosa chinensis HOM05D000489 ORTHO05D000372 7.4e-06 54.7 119 29.4
SGA_v2.0_scaffold81G26032 Striga asiatica HOM05D000489 ORTHO05D000372 7.4e-06 54.7 119 32.8
Haze_04682 Corylus avellana HOM05D000489 ORTHO05D000372 9.6e-06 54.3 105 30.5
FAN15G3173 Fragaria x ananassa HOM05D000489 ORTHO05D000372 9.6e-06 54.3 119 29.4
Hund09506 Selenicereus undatus HOM05D000489 ORTHO05D000372 9.6e-06 54.3 126 27.8


User provided reference genes

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