Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 6.5e-134 480.7 242 100.0
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 1.4e-112 409.8 242 84.7
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 6.2e-92 341.3 242 69.8
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 6.2e-84 314.7 234 67.9
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 3.5e-79 298.9 232 62.9
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 9.0e-75 284.3 232 58.6
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 1.9e-69 266.5 243 58.0
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 2.1e-68 263.1 242 57.0
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 8.1e-68 261.2 243 57.6
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 2.4e-67 259.6 242 55.8
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.2e-66 257.3 237 55.3
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 1.5e-66 256.9 245 54.7
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.5e-66 256.9 235 56.6
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 5.8e-66 255.0 236 55.1
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 6.5e-65 251.5 231 55.0
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 2.5e-64 249.6 245 55.5
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 4.2e-64 248.8 231 53.7
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 7.1e-64 248.1 242 54.5
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 1.6e-63 246.9 240 52.9
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.7e-63 246.1 239 55.6
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 7.9e-63 244.6 228 53.1
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.0e-62 244.2 239 54.8
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.0e-62 244.2 234 54.3
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 1.3e-62 243.8 238 51.7
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.3e-62 243.8 234 52.6
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.8e-62 243.4 228 52.6
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 3.0e-62 242.7 231 52.8
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 3.0e-62 242.7 240 52.5
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 5.1e-62 241.9 231 52.8
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.9e-61 240.0 232 53.4
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 2.5e-61 239.6 228 52.2
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 3.3e-61 239.2 228 53.1
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 5.7e-61 238.4 234 53.4
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.3e-60 237.3 228 51.3
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 2.1e-60 236.5 230 49.6
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 3.7e-60 235.7 230 53.9
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.8e-60 235.3 231 51.9
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 2.4e-59 233.0 231 51.1
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.4e-59 233.0 238 50.4
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 4.1e-59 232.3 228 51.3
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.1e-59 232.3 231 51.1
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 2.0e-58 229.9 230 50.9
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 2.6e-58 229.6 233 50.2
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 3.4e-58 229.2 232 52.6
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 5.8e-58 228.4 229 49.3
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 2.2e-57 226.5 236 47.0
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 2.2e-57 226.5 196 55.1
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 2.9e-57 226.1 229 49.8
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 5.0e-57 225.3 234 51.7
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 1.1e-56 224.2 229 48.9
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.4e-56 223.8 232 51.3
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 1.9e-56 223.4 233 49.8
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.7e-55 219.5 234 50.9
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 4.6e-55 218.8 241 48.1
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 4.6e-55 218.8 201 55.2
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 6.1e-55 218.4 229 47.2
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 3.0e-54 216.1 235 49.4
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 3.0e-54 216.1 241 48.5
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.1e-54 215.3 235 48.9
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.1e-54 215.3 235 48.9
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 6.7e-54 214.9 235 49.4
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 5.7e-53 211.8 226 46.9
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 9.7e-53 211.1 228 48.7
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 9.7e-53 211.1 231 46.3
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.3e-52 210.7 229 47.2
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.3e-52 210.7 229 47.2
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 1.3e-52 210.7 226 46.0
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.3e-52 210.7 229 45.9
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.2e-52 209.9 238 47.1
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.8e-52 209.5 228 49.1
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.8e-52 209.5 228 43.9
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 3.7e-52 209.1 226 47.8
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 3.7e-52 209.1 226 46.0
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.8e-52 208.8 229 46.7
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 6.3e-52 208.4 229 46.7
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 1.1e-51 207.6 232 49.1
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.1e-51 207.6 231 48.1
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 1.8e-51 206.8 232 47.8
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 3.1e-51 206.1 230 47.0
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 4.1e-51 205.7 213 52.1
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 5.3e-51 205.3 228 48.2
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 5.3e-51 205.3 213 52.1
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 6.9e-51 204.9 197 49.7
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 6.9e-51 204.9 227 46.3
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 3.4e-50 202.6 235 49.8
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 3.4e-50 202.6 231 51.9
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.3e-49 200.7 228 46.1
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 1.7e-49 200.3 220 49.1
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 2.9e-49 199.5 163 65.0
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 3.8e-49 199.1 238 49.6
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 6.5e-49 198.4 226 43.8
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 8.5e-49 198.0 227 45.8
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 8.5e-49 198.0 147 66.0
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 1.4e-48 197.2 230 46.5
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 1.4e-48 197.2 230 46.5
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 1.4e-48 197.2 230 46.5
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 1.9e-48 196.8 225 45.3
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.9e-48 196.8 230 45.7
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 4.2e-48 195.7 230 46.5
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 4.2e-48 195.7 230 46.5
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 4.2e-48 195.7 231 47.2
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 7.2e-48 194.9 211 48.3
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 7.2e-48 194.9 231 45.0
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 7.2e-48 194.9 211 48.3
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 2.7e-47 193.0 157 61.8
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 3.6e-47 192.6 235 44.3
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 7.9e-47 191.4 229 44.1
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.8e-46 190.3 213 46.9
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 5.1e-46 188.7 229 43.7
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 8.8e-46 188.0 229 43.7
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 1.1e-45 187.6 231 45.0
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.5e-45 187.2 235 41.3
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 1.3e-44 184.1 232 44.8
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 2.2e-44 183.3 235 44.7
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.1e-43 181.0 232 43.1
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.1e-43 181.0 234 43.2
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 2.4e-43 179.9 220 41.4
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 3.1e-43 179.5 230 42.6
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 3.1e-43 179.5 228 46.1
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 4.1e-43 179.1 229 41.9
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 4.1e-43 179.1 237 45.1
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 4.1e-43 179.1 222 46.8
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 5.3e-43 178.7 229 45.4
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 6.9e-43 178.3 238 42.9
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 1.5e-42 177.2 231 41.6
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 1.3e-41 174.1 231 40.7
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 6.5e-41 171.8 189 43.9
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 8.5e-41 171.4 226 45.6
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 1.4e-40 170.6 230 44.3
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.4e-40 170.6 211 44.5
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 2.7e-39 166.4 226 44.7
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.7e-39 166.4 239 41.0
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 2.7e-39 166.4 176 44.9
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 6.1e-39 165.2 231 41.1
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.4e-38 164.1 152 52.0
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 3.0e-38 162.9 232 42.2
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 3.0e-38 162.9 232 42.2
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.8e-36 156.4 165 47.9
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 3.7e-36 156.0 235 36.6
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 1.1e-35 154.5 217 41.5
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 5.3e-35 152.1 215 36.7
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 9.1e-35 151.4 152 50.0
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 4.5e-34 149.1 201 42.8
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 4.5e-34 149.1 248 34.3
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 5.9e-34 148.7 233 41.6
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 1.0e-33 147.9 180 44.4
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 1.0e-33 147.9 215 37.2
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 7.2e-32 141.7 146 50.7
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.8e-30 137.1 152 46.1
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.0e-30 136.0 217 39.2
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 2.0e-29 133.7 217 32.3
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 7.0e-27 125.2 216 33.3
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 4.5e-26 122.5 196 34.2
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 7.7e-26 121.7 215 29.8
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 2.9e-25 119.8 231 32.0
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 1.9e-24 117.1 114 55.3
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 1.6e-23 114.0 122 44.3
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.7e-23 113.2 209 36.4
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 2.7e-23 113.2 139 41.0
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 1.0e-22 111.3 111 47.7
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 3.0e-22 109.8 78 65.4
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.2e-20 103.6 105 48.6
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.8e-20 102.4 147 42.2
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 2.4e-19 100.1 143 44.1
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.8e-17 92.8 120 46.7
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 4.7e-15 85.9 223 33.2
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 5.2e-14 82.4 77 53.2
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 2.0e-13 80.5 73 49.3
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 9.8e-13 78.2 91 42.9
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 7.0e-11 72.0 152 28.9
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 9.2e-11 71.6 94 48.9
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 7.7e-10 68.6 92 35.9
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.7e-09 67.4 59 57.6
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 2.9e-09 66.6 90 41.1
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 1.5e-08 64.3 98 34.7
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 7.3e-08 62.0 63 52.4
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.2e-07 61.2 53 54.7
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.6e-07 60.8 133 30.1
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 1.4e-06 57.8 99 30.3
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.4e-06 57.8 99 30.3


User provided reference genes

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