Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 1.9e-167 592.4 297 100.0
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 4.4e-39 166.0 191 58.6
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 2.7e-33 146.7 188 54.3
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 1.6e-28 131.0 197 47.7
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 6.8e-24 115.5 188 45.2
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 3.4e-15 86.7 191 37.7
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 3.2e-13 80.1 182 38.5
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 1.6e-12 77.8 195 36.4
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 3.5e-12 76.6 182 36.8
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 4.6e-12 76.3 182 37.4
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.0e-11 75.1 182 37.4
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 1.0e-11 75.1 182 36.8
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 3.0e-11 73.6 183 37.2
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.9e-11 73.2 191 33.0
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 6.6e-11 72.4 103 46.6
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 8.6e-11 72.0 183 32.8
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 7.3e-10 68.9 188 35.1
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 9.5e-10 68.6 188 35.1
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 1.6e-09 67.8 188 33.5
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.6e-09 66.6 188 35.1
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 4.7e-09 66.2 188 33.5
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 8.0e-09 65.5 65 55.4
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 1.8e-08 64.3 186 34.9
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.8e-08 64.3 182 34.1
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 2.3e-08 63.9 191 33.0
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.3e-08 63.9 191 33.0
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 3.1e-08 63.5 40 65.0
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 4.0e-08 63.2 39 69.2
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 4.0e-08 63.2 39 69.2
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 5.2e-08 62.8 36 72.2
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 5.2e-08 62.8 183 33.9
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 5.2e-08 62.8 182 33.5
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 5.2e-08 62.8 197 30.5
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 5.2e-08 62.8 36 72.2
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 6.8e-08 62.4 36 75.0
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 6.8e-08 62.4 182 34.1
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 6.8e-08 62.4 36 75.0
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 6.8e-08 62.4 36 75.0
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 6.8e-08 62.4 36 75.0
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 6.8e-08 62.4 36 75.0
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 6.8e-08 62.4 36 75.0
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 6.8e-08 62.4 36 75.0
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 6.8e-08 62.4 36 75.0
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 6.8e-08 62.4 36 75.0
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 8.9e-08 62.0 38 68.4
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 1.2e-07 61.6 36 69.4
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.2e-07 61.6 191 32.5
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 1.5e-07 61.2 182 33.5
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 1.5e-07 61.2 182 32.4
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 1.5e-07 61.2 33 81.8
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 1.5e-07 61.2 185 34.1
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 1.5e-07 61.2 36 72.2
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 2.0e-07 60.8 36 72.2
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.0e-07 60.8 36 75.0
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 2.0e-07 60.8 36 69.4
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.0e-07 60.8 191 32.5
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 2.0e-07 60.8 36 72.2
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 2.6e-07 60.5 36 75.0
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 2.6e-07 60.5 36 72.2
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 2.6e-07 60.5 35 74.3
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 3.4e-07 60.1 36 69.4
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 3.4e-07 60.1 36 69.4
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 3.4e-07 60.1 36 69.4
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 3.4e-07 60.1 36 69.4
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 3.4e-07 60.1 188 35.1
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 3.4e-07 60.1 36 69.4
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 3.4e-07 60.1 180 33.9
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 3.4e-07 60.1 36 69.4
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 3.4e-07 60.1 36 69.4
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 3.4e-07 60.1 36 69.4
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 3.4e-07 60.1 36 69.4
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 3.4e-07 60.1 36 69.4
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 3.4e-07 60.1 36 69.4
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 3.4e-07 60.1 185 33.0
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 3.4e-07 60.1 36 69.4
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 3.4e-07 60.1 36 69.4
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 3.4e-07 60.1 36 69.4
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 3.4e-07 60.1 36 69.4
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 4.4e-07 59.7 36 72.2
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 4.4e-07 59.7 36 69.4
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 4.4e-07 59.7 35 68.6
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 4.4e-07 59.7 36 69.4
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 4.4e-07 59.7 36 69.4
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 4.4e-07 59.7 36 69.4
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 5.8e-07 59.3 182 33.5
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 5.8e-07 59.3 36 69.4
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 5.8e-07 59.3 36 72.2
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 5.8e-07 59.3 36 69.4
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 5.8e-07 59.3 72 45.8
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 5.8e-07 59.3 39 64.1
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 5.8e-07 59.3 36 72.2
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 5.8e-07 59.3 188 31.4
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 7.5e-07 58.9 180 31.1
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 7.5e-07 58.9 183 33.9
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 66.7
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 7.5e-07 58.9 39 64.1
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 7.5e-07 58.9 36 69.4
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 7.5e-07 58.9 189 30.7
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 9.8e-07 58.5 36 69.4
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 9.8e-07 58.5 36 69.4
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 9.8e-07 58.5 36 69.4
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 1.3e-06 58.2 36 69.4
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.3e-06 58.2 36 69.4
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 1.3e-06 58.2 182 31.9
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 1.3e-06 58.2 36 66.7
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.3e-06 58.2 188 30.9
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.3e-06 58.2 191 31.4
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 1.3e-06 58.2 36 69.4
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 1.3e-06 58.2 36 69.4
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 1.3e-06 58.2 36 66.7
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.3e-06 58.2 186 30.1
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 1.3e-06 58.2 36 69.4
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 1.7e-06 57.8 33 75.8
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 1.7e-06 57.8 33 75.8
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 1.7e-06 57.8 33 75.8
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 1.7e-06 57.8 33 75.8
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 1.7e-06 57.8 33 75.8
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 1.7e-06 57.8 33 72.7
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 1.7e-06 57.8 33 75.8
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 1.7e-06 57.8 188 33.5
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 2.2e-06 57.4 36 66.7
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 2.2e-06 57.4 36 66.7
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.2e-06 57.4 188 32.4
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 2.2e-06 57.4 181 31.5
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 2.2e-06 57.4 33 72.7
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 2.9e-06 57.0 201 29.4
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 2.9e-06 57.0 184 34.8
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 2.9e-06 57.0 82 45.1
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 2.9e-06 57.0 36 66.7
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 2.9e-06 57.0 190 31.1
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 3.7e-06 56.6 184 31.5
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 3.7e-06 56.6 36 66.7
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 3.7e-06 56.6 88 44.3
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 3.7e-06 56.6 36 69.4
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 6.4e-06 55.8 36 63.9
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 6.4e-06 55.8 36 63.9
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 6.4e-06 55.8 36 63.9
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 6.4e-06 55.8 36 63.9
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 6.4e-06 55.8 184 31.0
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 6.4e-06 55.8 186 30.1
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 6.4e-06 55.8 36 63.9
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 8.3e-06 55.5 182 31.3


User provided reference genes

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