Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 3.8e-131 471.5 233 100.0
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.5e-82 310.1 242 66.9
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 2.8e-81 305.8 240 66.2
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 3.6e-81 305.4 242 65.7
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 3.6e-81 305.4 242 65.7
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 6.2e-81 304.7 242 64.9
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 8.1e-81 304.3 242 64.0
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 1.4e-80 303.5 242 63.6
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 1.8e-80 303.1 242 64.5
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 2.3e-80 302.8 242 63.6
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 2.3e-80 302.8 242 64.9
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 2.3e-80 302.8 242 63.2
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 3.1e-80 302.4 241 64.3
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 3.1e-80 302.4 242 64.9
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 3.1e-80 302.4 242 64.9
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 4.0e-80 302.0 242 63.2
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 4.0e-80 302.0 242 64.0
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 4.0e-80 302.0 242 63.2
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 4.0e-80 302.0 242 63.2
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 4.0e-80 302.0 242 64.9
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 5.2e-80 301.6 242 64.0
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 5.2e-80 301.6 242 63.2
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 5.2e-80 301.6 242 63.2
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 5.2e-80 301.6 246 61.8
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 6.8e-80 301.2 241 63.1
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 1.2e-79 300.4 242 63.2
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 1.2e-79 300.4 242 63.6
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 1.2e-79 300.4 241 64.3
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 1.2e-79 300.4 242 63.6
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.2e-79 300.4 242 63.2
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 1.5e-79 300.1 242 63.6
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 1.5e-79 300.1 242 63.6
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 1.5e-79 300.1 242 63.6
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 1.5e-79 300.1 242 64.0
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 2.0e-79 299.7 242 63.6
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 2.0e-79 299.7 242 64.5
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 2.0e-79 299.7 242 64.5
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 2.6e-79 299.3 242 63.2
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 2.6e-79 299.3 242 62.8
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 2.6e-79 299.3 242 63.2
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 3.4e-79 298.9 242 63.6
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 3.4e-79 298.9 242 63.6
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 3.4e-79 298.9 242 63.2
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 4.4e-79 298.5 242 62.8
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 4.4e-79 298.5 242 63.6
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 4.4e-79 298.5 242 63.2
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 4.4e-79 298.5 241 62.7
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 5.8e-79 298.1 242 63.6
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 5.8e-79 298.1 241 63.1
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 5.8e-79 298.1 242 62.8
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 7.6e-79 297.7 242 62.4
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 9.9e-79 297.4 242 62.4
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 9.9e-79 297.4 242 62.4
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 9.9e-79 297.4 242 62.4
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 1.3e-78 297.0 242 62.0
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 1.3e-78 297.0 242 64.0
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 1.3e-78 297.0 242 62.8
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 1.3e-78 297.0 242 63.2
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 1.7e-78 296.6 242 63.2
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 1.7e-78 296.6 242 63.6
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 1.7e-78 296.6 242 62.0
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.2e-78 296.2 242 62.8
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 2.2e-78 296.2 241 63.1
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 2.2e-78 296.2 242 62.0
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 2.9e-78 295.8 242 62.4
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 2.9e-78 295.8 242 62.0
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 2.9e-78 295.8 242 63.2
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 2.9e-78 295.8 242 62.8
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 2.9e-78 295.8 242 63.2
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 3.8e-78 295.4 242 62.8
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 3.8e-78 295.4 242 62.8
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 3.8e-78 295.4 242 63.2
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 3.8e-78 295.4 242 63.2
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 3.8e-78 295.4 242 62.0
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 4.9e-78 295.0 242 62.8
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 6.4e-78 294.7 242 62.8
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 6.4e-78 294.7 242 62.8
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 6.4e-78 294.7 242 62.4
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 6.4e-78 294.7 242 62.8
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 8.4e-78 294.3 242 63.2
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 8.4e-78 294.3 242 62.8
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 1.1e-77 293.9 242 62.0
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 1.1e-77 293.9 242 63.2
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 1.1e-77 293.9 242 62.8
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 1.4e-77 293.5 242 61.2
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 1.4e-77 293.5 241 64.3
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 1.9e-77 293.1 242 62.0
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 2.4e-77 292.7 242 62.4
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 2.4e-77 292.7 241 63.1
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 2.4e-77 292.7 242 62.4
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 3.2e-77 292.4 242 62.4
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 4.1e-77 292.0 240 61.7
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 4.1e-77 292.0 242 61.2
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 4.1e-77 292.0 242 61.2
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 4.1e-77 292.0 231 64.1
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 5.4e-77 291.6 242 62.0
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 5.4e-77 291.6 242 62.4
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 9.2e-77 290.8 252 61.5
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 1.2e-76 290.4 242 62.4
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 1.6e-76 290.0 241 61.4
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 2.7e-76 289.3 242 60.7
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 2.3e-75 286.2 242 62.0
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 3.0e-75 285.8 242 61.6
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 5.1e-75 285.0 277 55.6
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 5.1e-75 285.0 242 61.6
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 1.1e-74 283.9 263 56.7
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 1.1e-74 283.9 242 59.9
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 1.5e-74 283.5 241 61.8
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 2.5e-74 282.7 242 60.7
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 5.6e-74 281.6 231 61.9
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 5.6e-74 281.6 231 61.5
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 9.6e-74 280.8 239 61.1
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 1.6e-73 280.0 242 59.5
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 2.8e-73 279.3 242 60.3
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 6.2e-73 278.1 242 60.7
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 8.1e-73 277.7 242 62.0
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 1.1e-72 277.3 243 60.5
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 1.1e-72 277.3 242 61.2
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 3.1e-72 275.8 243 60.1
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 1.5e-71 273.5 231 60.6
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 1.9e-69 266.5 247 56.7
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 1.5e-66 256.9 212 63.2
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 6.9e-64 248.1 197 66.0
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 2.9e-62 242.7 264 49.2
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 2.1e-60 236.5 242 52.5
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 2.5e-58 229.6 242 53.3
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 9.0e-56 221.1 198 56.6
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 5.8e-55 218.4 151 67.5
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 1.3e-51 207.2 242 47.1
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 1.9e-50 203.4 151 62.9
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 7.9e-44 181.4 130 66.2
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 1.0e-43 181.0 119 70.6
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 1.3e-43 180.6 235 45.1
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 5.1e-43 178.7 115 73.0
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 7.4e-42 174.9 118 66.9
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 6.7e-35 151.8 108 65.7
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 1.4e-32 144.1 242 38.8
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 1.4e-32 144.1 157 51.0
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 6.9e-32 141.7 139 57.6
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 6.9e-32 141.7 92 68.5
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 5.1e-27 125.6 74 78.4
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 3.9e-19 99.4 152 42.1
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 7.0e-16 88.6 88 56.8
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 2.5e-13 80.1 116 44.8
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 3.2e-13 79.7 81 56.8
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 6.1e-12 75.5 113 46.0
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 2.3e-11 73.6 84 50.0
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 2.0e-10 70.5 251 27.5
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 7.5e-10 68.6 239 24.7
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 2.8e-09 66.6 80 45.0
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 3.1e-08 63.2 52 63.5
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 4.1e-08 62.8 263 25.9
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 2.7e-07 60.1 210 27.1
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 1.3e-06 57.8 42 59.5


User provided reference genes

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