Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 2.3e-97 359.0 192 100.0
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 4.0e-78 295.0 213 78.9
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 2.0e-77 292.7 192 82.3
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 4.5e-77 291.6 195 84.6
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 3.7e-71 271.9 194 78.4
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 6.0e-66 254.6 192 72.4
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 7.9e-66 254.2 192 72.4
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 3.0e-65 252.3 192 71.9
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 5.1e-65 251.5 194 73.7
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 1.9e-64 249.6 195 69.7
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 1.9e-64 249.6 195 69.7
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 1.9e-64 249.6 195 70.3
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 9.7e-64 247.3 192 71.4
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 1.3e-63 246.9 193 70.5
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 2.8e-63 245.7 196 73.5
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 3.7e-63 245.4 196 68.9
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 5.3e-62 241.5 193 68.4
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 1.7e-60 236.5 194 71.1
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 2.9e-60 235.7 193 67.9
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 1.1e-59 233.8 193 67.4
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 1.9e-59 233.0 193 64.8
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 7.2e-59 231.1 190 66.8
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 7.9e-58 227.6 195 64.6
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 1.0e-57 227.3 188 67.6
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 1.5e-56 223.4 193 65.3
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 1.5e-56 223.4 193 65.3
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 3.3e-56 222.2 182 67.6
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 9.7e-56 220.7 193 63.7
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 1.3e-55 220.3 194 62.9
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 1.7e-55 219.9 191 62.8
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 1.7e-55 219.9 193 67.4
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 1.7e-55 219.9 194 64.4
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 2.2e-55 219.5 192 62.0
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 4.8e-55 218.4 192 65.6
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 8.2e-55 217.6 192 65.1
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 8.2e-55 217.6 199 62.8
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 1.1e-54 217.2 194 66.0
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 1.1e-54 217.2 195 65.6
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 1.4e-54 216.9 191 63.9
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 1.8e-54 216.5 197 61.9
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 1.8e-54 216.5 194 65.5
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 2.4e-54 216.1 195 64.1
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 3.1e-54 215.7 195 64.1
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 3.1e-54 215.7 194 67.5
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 9.1e-54 214.2 195 65.1
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 1.2e-53 213.8 192 63.5
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 4.5e-53 211.8 195 62.1
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 5.9e-53 211.5 196 63.3
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 7.7e-53 211.1 172 69.2
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 1.3e-52 210.3 195 63.6
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 2.9e-52 209.1 196 60.7
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 5.0e-52 208.4 194 60.3
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 5.0e-52 208.4 193 62.2
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 6.5e-52 208.0 187 64.7
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 1.9e-51 206.5 181 64.6
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 2.5e-51 206.1 194 61.3
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 4.2e-51 205.3 191 63.9
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 9.4e-51 204.1 199 59.3
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 1.2e-50 203.8 194 62.4
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 3.6e-50 202.2 196 61.7
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 7.9e-50 201.1 191 58.6
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 1.0e-49 200.7 197 61.4
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 1.8e-49 199.9 193 62.2
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 3.0e-49 199.1 192 60.4
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 3.9e-49 198.7 191 60.7
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 6.7e-49 198.0 193 61.1
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 6.7e-49 198.0 190 57.9
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 1.1e-48 197.2 194 61.3
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 1.7e-47 193.4 182 63.2
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 1.4e-46 190.3 190 60.5
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 1.4e-46 190.3 171 63.2
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 5.3e-46 188.3 190 58.9
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 5.3e-46 188.3 198 55.6
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 9.1e-46 187.6 192 55.7
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 1.2e-45 187.2 193 60.1
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 7.7e-45 184.5 191 55.0
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 1.3e-44 183.7 195 54.4
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 1.3e-44 183.7 195 54.4
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 1.7e-44 183.3 193 58.0
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 2.2e-44 183.0 187 57.8
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 2.9e-44 182.6 191 55.5
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 3.8e-44 182.2 192 55.7
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 3.8e-44 182.2 171 63.7
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 5.0e-44 181.8 190 57.4
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 6.5e-44 181.4 192 54.7
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 1.4e-43 180.3 181 60.2
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 1.4e-43 180.3 187 55.1
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 1.4e-43 180.3 193 55.4
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 2.5e-43 179.5 192 55.7
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 3.2e-43 179.1 149 65.8
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 1.6e-42 176.8 191 53.9
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 3.9e-41 172.2 198 52.0
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 8.8e-41 171.0 188 52.1
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 1.1e-40 170.6 147 66.0
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 8.2e-39 164.5 192 54.2
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 1.1e-38 164.1 177 57.1
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 1.8e-38 163.3 192 51.0
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 1.2e-37 160.6 196 49.5
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 4.5e-37 158.7 192 52.1
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 1.3e-36 157.1 125 71.2
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 1.7e-36 156.8 189 48.7
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 3.8e-36 155.6 205 47.3
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 3.8e-36 155.6 195 50.3
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 3.8e-36 155.6 192 50.0
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 1.6e-34 150.2 148 59.5
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 2.1e-34 149.8 194 49.0
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 2.7e-34 149.4 186 44.6
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 5.2e-33 145.2 149 59.7
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 4.4e-32 142.1 192 47.9
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 4.4e-32 142.1 223 44.4
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 3.7e-31 139.0 192 47.4
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 8.2e-31 137.9 202 43.1
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 5.3e-30 135.2 192 43.8
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 5.3e-30 135.2 192 43.8
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 1.6e-29 133.7 207 44.4
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 2.9e-28 129.4 192 43.2
SGA_v2.0_scaffold63G21769 Striga asiatica HOM05D005762 ORTHO05D006823 1.1e-27 127.5 79 84.8
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 1.5e-27 127.1 83 75.9
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 7.2e-27 124.8 83 74.7
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 9.4e-27 124.4 83 73.5
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 3.6e-26 122.5 139 52.5
vmacro13053 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 1.4e-25 120.6 72 84.7
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 4.4e-24 115.5 112 62.5
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 7.5e-24 114.8 146 50.0
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 6.3e-23 111.7 147 48.3
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 8.3e-23 111.3 169 43.2
Nitab4.5_0008759g0010 Nicotiana tabacum HOM05D005762 ORTHO05D006823 1.6e-21 107.1 83 68.7
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 5.9e-21 105.1 157 46.5
Dinv09756 Davidia involucrata HOM05D000667 ORTHO05D002614 5.9e-21 105.1 90 62.2
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 3.8e-20 102.4 90 62.2
Rhsim01G0060600 Rhododendron simsii HOM05D005762 ORTHO05D006823 5.5e-19 98.6 101 59.4
Oeu064081.1 Olea europaea HOM05D005762 ORTHO05D006823 4.7e-18 95.5 63 82.5
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 2.3e-17 93.2 85 58.8
CsaV3_1G029180 Cucumis sativus L. HOM05D005762 ORTHO05D006823 1.5e-16 90.5 79 63.3
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 1.7e-15 87.0 73 57.5
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 2.7e-13 79.7 84 50.0
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 8.6e-12 74.7 134 38.1
Actinidia26604 Actinidia chinensis HOM05D005762 ORTHO05D006823 1.1e-11 74.3 79 58.2
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 2.5e-11 73.2 182 32.4
Aa31LG2G19570 Aethionema arabicum HOM05D005762 ORTHO05D006823 3.3e-11 72.8 94 50.0
MD02G1004700 Malus domestica HOM05D005762 ORTHO05D006823 5.4e-06 55.5 51 54.9


User provided reference genes

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