Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold116G32303 Striga asiatica HOM05D001817 ORTHO05D001647 5.4e-71 270.8 127 100.0
Migut.E01813 Erythranthe guttata HOM05D017739 ORTHO05D001647 5.0e-16 88.2 123 39.0
FAN20G0384 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.4e-13 80.1 128 39.1
Ciclev10009917m.g Citrus clementina HOM05D001817 ORTHO05D001647 3.0e-13 79.0 103 40.8
FvH4_2g28690 Fragaria vesca HOM05D001817 ORTHO05D001647 3.0e-13 79.0 122 40.2
Migut.F01515 Erythranthe guttata HOM05D017739 ORTHO05D001647 3.9e-13 78.6 129 39.5
FvH4_2g27480 Fragaria vesca HOM05D001817 ORTHO05D001647 1.5e-12 76.6 105 42.9
FAN15G2483 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.5e-12 76.6 129 40.3
FAN24G1722 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.9e-12 76.3 129 39.5
TAR622G1058 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.9e-12 76.3 120 37.5
FvH4_5g25410 Fragaria vesca HOM05D001817 ORTHO05D001647 2.5e-12 75.9 108 38.9
FAN18G2855 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.5e-12 75.9 108 38.9
TAR622G0422 Trochodendron aralioides HOM05D001817 ORTHO05D001647 2.5e-12 75.9 96 39.6
Manes.16G124600 Manihot esculenta HOM05D001817 ORTHO05D001647 3.3e-12 75.5 108 38.9
TAR622G0534 Trochodendron aralioides HOM05D001817 ORTHO05D001647 3.3e-12 75.5 101 39.6
CiPaw.08G009300 Carya illinoinensis HOM05D001817 ORTHO05D001647 7.4e-12 74.3 101 43.6
FAN27G3307 Fragaria x ananassa HOM05D000140 ORTHO05D000087 9.7e-12 73.9 128 36.7
ClCG05G016690 Citrullus lanatus HOM05D001817 ORTHO05D001647 1.7e-11 73.2 118 35.6
QL07p000848 Quercus lobata HOM05D001817 ORTHO05D001647 1.7e-11 73.2 98 38.8
QL07p000880 Quercus lobata HOM05D001817 ORTHO05D001647 1.7e-11 73.2 98 38.8
Sed0025130 Sechium edule HOM05D001817 ORTHO05D001647 1.7e-11 73.2 83 44.6
Duzib150G1023 Durio zibethinus HOM05D001817 ORTHO05D001647 2.2e-11 72.8 100 41.0
MD08G1079500 Malus domestica HOM05D001817 ORTHO05D001647 2.8e-11 72.4 100 41.0
Aqoxy5G03160 Aquilegia oxysepala HOM05D001817 ORTHO05D001647 3.7e-11 72.0 124 39.5
Solyc01g057185.1 Solanum lycopersicum HOM05D028014 ORTHO05D030439 3.7e-11 72.0 124 33.9
Migut.E00880 Erythranthe guttata HOM05D017739 ORTHO05D001647 4.8e-11 71.6 126 33.3
RcHm_v2.0_Chr6g0297461 Rosa chinensis HOM05D001817 ORTHO05D001647 4.8e-11 71.6 122 37.7
Migut.E01748 Erythranthe guttata HOM05D017739 ORTHO05D001647 8.2e-11 70.9 126 33.3
Prupe.1G484000 Prunus persica HOM05D001817 ORTHO05D001647 8.2e-11 70.9 107 37.4
Sabra06G0201500 Salix brachista HOM05D001817 ORTHO05D001647 8.2e-11 70.9 103 37.9
Glyma.17G218100 Glycine max HOM05D001817 ORTHO05D001647 1.4e-10 70.1 112 34.8
Gorai.013G068000 Gossypium raimondii HOM05D001817 ORTHO05D001647 1.4e-10 70.1 108 36.1
Atru.chr6.250 Acer truncatum HOM05D001817 ORTHO05D001647 1.8e-10 69.7 121 37.2
Sed0003760 Sechium edule HOM05D001817 ORTHO05D001647 1.8e-10 69.7 113 34.5
Solyc09g066005.1 Solanum lycopersicum HOM05D028014 ORTHO05D030439 1.8e-10 69.7 103 37.9
Duzib052G0237 Durio zibethinus HOM05D001817 ORTHO05D001647 2.4e-10 69.3 104 41.3
FvH4_2g28712 Fragaria vesca HOM05D001817 ORTHO05D001647 2.4e-10 69.3 82 39.0
FAN27G2147 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.4e-10 69.3 82 40.2
Gohir.A13G061900 Gossypium hirsutum HOM05D001817 ORTHO05D001647 2.4e-10 69.3 108 35.2
CsaV3_6G045660 Cucumis sativus L. HOM05D001817 ORTHO05D001647 3.1e-10 68.9 101 37.6
Rhsim08G0041600 Rhododendron simsii HOM05D000350 ORTHO05D000228 3.1e-10 68.9 73 42.5
VMungo0720G0118 Vigna mungo HOM05D001817 ORTHO05D001647 3.1e-10 68.9 112 33.9
Potri.004G167900 Populus trichocarpa HOM05D001817 ORTHO05D001647 4.1e-10 68.6 100 35.0
QL12p013638 Quercus lobata HOM05D001817 ORTHO05D001647 4.1e-10 68.6 98 37.8
CsaV3_3G046190 Cucumis sativus L. HOM05D001817 ORTHO05D001647 5.3e-10 68.2 117 37.6
MD08G1151500 Malus domestica HOM05D001817 ORTHO05D001647 6.9e-10 67.8 121 36.4
THA.LOC104818605 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 6.9e-10 67.8 100 37.0
THA.LOC104818607 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 6.9e-10 67.8 100 37.0
THA.LOC104818611 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 6.9e-10 67.8 100 37.0
Lalb_Chr13g0294691 Lupinus albus HOM05D001817 ORTHO05D001647 1.2e-09 67.0 104 38.5
TAR629G0897 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.2e-09 67.0 82 36.6
TAR629G2934 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.2e-09 67.0 82 36.6
BraA01t00587Z Brassica rapa HOM05D001817 ORTHO05D001647 1.5e-09 66.6 108 37.0
RcHm_v2.0_Chr6g0297491 Rosa chinensis HOM05D001817 ORTHO05D001647 1.5e-09 66.6 79 46.8
FvH4_2g28701 Fragaria vesca HOM05D001817 ORTHO05D001647 2.0e-09 66.2 101 36.6
FAN24G3294 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.0e-09 66.2 101 36.6
FvH4_2g28680 Fragaria vesca HOM05D001817 ORTHO05D001647 3.4e-09 65.5 104 35.6
Phvul.007G239600 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 3.4e-09 65.5 99 34.3
Sp7g29890 Schrenkiella parvula HOM05D001817 ORTHO05D001647 3.4e-09 65.5 100 38.0
TPR.G3270 Trifolium pratense HOM05D001817 ORTHO05D001647 3.4e-09 65.5 77 36.4
MELO3C033004.2 Cucumis melo HOM05D001817 ORTHO05D001647 4.5e-09 65.1 124 33.1
Lalb_Chr12g0205721 Lupinus albus HOM05D001817 ORTHO05D001647 5.9e-09 64.7 83 41.0
Potri.006G257600 Populus trichocarpa HOM05D001817 ORTHO05D001647 5.9e-09 64.7 119 32.8
Sabra09G0098900 Salix brachista HOM05D001817 ORTHO05D001647 5.9e-09 64.7 93 33.3
Solyc06g005395.1 Solanum lycopersicum HOM05D028014 ORTHO05D030439 7.7e-09 64.3 106 33.0
Glyma.10G113700 Glycine max HOM05D001817 ORTHO05D001647 1.0e-08 63.9 82 37.8
Potri.009G129400 Populus trichocarpa HOM05D001817 ORTHO05D001647 1.0e-08 63.9 93 32.3
TWI34G0730 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 1.0e-08 63.9 121 32.2
Cpa.g.sc187.6 Carica papaya HOM05D001817 ORTHO05D001647 1.3e-08 63.5 101 35.6
ClCG05G016680 Citrullus lanatus HOM05D001817 ORTHO05D001647 1.7e-08 63.2 100 35.0
CsaV3_3G046170 Cucumis sativus L. HOM05D001817 ORTHO05D001647 1.7e-08 63.2 100 35.0
Sp2g10660 Schrenkiella parvula HOM05D001817 ORTHO05D001647 2.2e-08 62.8 124 32.3
TPR.G9069 Trifolium pratense HOM05D001817 ORTHO05D001647 2.2e-08 62.8 105 34.3
Lj5g0009014 Lotus japonicus HOM05D001817 ORTHO05D001647 2.9e-08 62.4 102 35.3
Sed0010450 Sechium edule HOM05D001817 ORTHO05D001647 2.9e-08 62.4 103 35.9
SGA_v2.0_scaffold71G23793 Striga asiatica HOM05D001817 ORTHO05D001647 2.9e-08 62.4 81 37.0
VMungo0464G1322 Vigna mungo HOM05D001817 ORTHO05D001647 2.9e-08 62.4 102 35.3
FAN24G1684 Fragaria x ananassa HOM05D001817 ORTHO05D001647 3.8e-08 62.0 95 35.8
Lj4g0019656 Lotus japonicus HOM05D001817 ORTHO05D001647 3.8e-08 62.0 112 29.5
Lj4g0027202 Lotus japonicus HOM05D001817 ORTHO05D001647 3.8e-08 62.0 111 31.5
Medtr0100s0140 Medicago truncatula HOM05D001817 ORTHO05D001647 3.8e-08 62.0 82 37.8
Medtr1g049240 Medicago truncatula HOM05D001817 ORTHO05D001647 3.8e-08 62.0 95 38.9
ATR0582G316 Amborella trichopoda HOM05D001817 ORTHO05D001647 5.0e-08 61.6 72 38.9
BcaC06g31519 Brassica carinata HOM05D001817 ORTHO05D001647 5.0e-08 61.6 119 32.8
Psat3g204760 Pisum sativum HOM05D001817 ORTHO05D001647 5.0e-08 61.6 78 35.9
BcaNung03138 Brassica carinata HOM05D001817 ORTHO05D001647 8.5e-08 60.8 112 34.8
Lj3g0023162 Lotus japonicus HOM05D001817 ORTHO05D001647 8.5e-08 60.8 107 33.6
Lalb_Chr21g0316231 Lupinus albus HOM05D001817 ORTHO05D001647 1.1e-07 60.5 107 35.5
CDE05G1510 Ceratophyllum demersum HOM05D000485 ORTHO05D000341 1.4e-07 60.1 81 37.0
CDE05G3187 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 1.4e-07 60.1 89 37.1
MELO3C003721.2 Cucumis melo HOM05D001817 ORTHO05D001647 1.4e-07 60.1 100 36.0
Lsat_1_v5_gn_6_115761 Lactuca sativa HOM05D001817 ORTHO05D001647 1.4e-07 60.1 73 38.4
RcHm_v2.0_Chr6g0297451 Rosa chinensis HOM05D001817 ORTHO05D001647 1.9e-07 59.7 64 43.8
C07p29020 Brassica napus HOM05D001817 ORTHO05D001647 2.5e-07 59.3 117 31.6
BolC7t43441H Brassica oleracea HOM05D001817 ORTHO05D001647 2.5e-07 59.3 117 31.6
HanXRQChr16g0511881 Helianthus annuus HOM05D001817 ORTHO05D001647 2.5e-07 59.3 102 32.4
Manes.02G218600 Manihot esculenta HOM05D001817 ORTHO05D001647 2.5e-07 59.3 98 37.8
Phvul.001G045800 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.5e-07 59.3 102 39.2
A06p46400 Brassica napus HOM05D001817 ORTHO05D001647 3.2e-07 58.9 117 30.8
BraA06t27504Z Brassica rapa HOM05D001817 ORTHO05D001647 3.2e-07 58.9 117 30.8
Glyma.09G085400 Glycine max HOM05D001817 ORTHO05D001647 3.2e-07 58.9 107 30.8
Thecc.02G154500 Theobroma cacao HOM05D001817 ORTHO05D001647 3.2e-07 58.9 105 31.4
CARHR032030 Cardamine hirsuta HOM05D001648 ORTHO05D001657 4.2e-07 58.5 71 40.8
HanXRQChr13g0400031 Helianthus annuus HOM05D001817 ORTHO05D001647 5.5e-07 58.2 103 33.0
Peaxi162Scf00429g00027 Petunia axillaris HOM05D028014 ORTHO05D030439 5.5e-07 58.2 123 34.1
Lj6g0012802 Lotus japonicus HOM05D001817 ORTHO05D001647 7.2e-07 57.8 84 35.7
HPP92_015931 Vanilla planifolia HOM05D001817 ORTHO05D001647 7.2e-07 57.8 85 31.8
BolC1t00681H Brassica oleracea HOM05D001817 ORTHO05D001647 9.4e-07 57.4 108 33.3
COL.COLO4_18892 Corchorus olitorius HOM05D001817 ORTHO05D001647 9.4e-07 57.4 100 33.0
TWI63G0410 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 9.4e-07 57.4 101 39.6
Aa31LG2G17870 Aethionema arabicum HOM05D001817 ORTHO05D001647 1.2e-06 57.0 64 39.1
Migut.E01694 Erythranthe guttata HOM05D017739 ORTHO05D001647 1.2e-06 57.0 98 32.7
FvH4_2g28710 Fragaria vesca HOM05D001817 ORTHO05D001647 1.2e-06 57.0 100 32.0
PSO675G1843 Papaver somniferum HOM05D001817 ORTHO05D001647 1.2e-06 57.0 82 31.7
Aqoxy4G00786 Aquilegia oxysepala HOM05D001817 ORTHO05D001647 1.6e-06 56.6 84 39.3
MELO3C022935.2 Cucumis melo HOM05D001648 ORTHO05D001657 1.6e-06 56.6 66 43.9
FAN24G2268 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.6e-06 56.6 100 32.0
Medtr1g048300 Medicago truncatula HOM05D001817 ORTHO05D001647 1.6e-06 56.6 109 31.2
AL1G46840 Arabidopsis lyrata HOM05D001648 ORTHO05D001657 2.1e-06 56.2 72 37.5
Psat1g016120 Pisum sativum HOM05D001817 ORTHO05D001647 2.1e-06 56.2 115 33.0
Thhalv10027525m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 2.7e-06 55.8 131 30.5
Sp2g10630 Schrenkiella parvula HOM05D001817 ORTHO05D001647 2.7e-06 55.8 101 30.7
Sed0003642 Sechium edule HOM05D001817 ORTHO05D001647 2.7e-06 55.8 92 34.8
C01p06840 Brassica napus HOM05D001817 ORTHO05D001647 3.6e-06 55.5 108 32.4
DCAR_015990 Daucus carota HOM05D001817 ORTHO05D001647 3.6e-06 55.5 102 33.3
Lalb_Chr13g0294711 Lupinus albus HOM05D001817 ORTHO05D001647 3.6e-06 55.5 66 40.9
TWI34G0812 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 3.6e-06 55.5 81 35.8
Atru.chr7.2473 Acer truncatum HOM05D001817 ORTHO05D001647 4.7e-06 55.1 64 39.1
A01p06730 Brassica napus HOM05D001817 ORTHO05D001647 4.7e-06 55.1 110 33.6
Carub.0007s0845 Capsella rubella HOM05D001817 ORTHO05D001647 4.7e-06 55.1 108 31.5
DCAR_016367 Daucus carota HOM05D001648 ORTHO05D001657 4.7e-06 55.1 71 39.4
FAN27G0609 Fragaria x ananassa HOM05D001817 ORTHO05D001647 4.7e-06 55.1 79 34.2
Glyma.08G357100 Glycine max HOM05D001817 ORTHO05D001647 4.7e-06 55.1 107 29.9
RcHm_v2.0_Chr5g0000721 Rosa chinensis HOM05D001648 ORTHO05D001657 4.7e-06 55.1 100 35.0
Aa31LG2G17850 Aethionema arabicum HOM05D001817 ORTHO05D001647 6.1e-06 54.7 87 34.5
AT1G32583 Arabidopsis thaliana HOM05D001648 ORTHO05D001657 6.1e-06 54.7 72 36.1
ECA246G0220 Erigeron canadensis HOM05D001817 ORTHO05D001647 6.1e-06 54.7 102 29.4
Lalb_Chr13g0294721 Lupinus albus HOM05D001817 ORTHO05D001647 6.1e-06 54.7 94 37.2
Phvul.009G216600 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 6.1e-06 54.7 99 33.3
QL02p021022 Quercus lobata HOM05D001817 ORTHO05D001647 6.1e-06 54.7 108 30.6
arahy.Tifrunner.gnm1.ann1.J1V55D Arachis hypogaea HOM05D001817 ORTHO05D001647 7.9e-06 54.3 99 32.3
arahy.Tifrunner.gnm1.ann1.SUQM4P Arachis hypogaea HOM05D001817 ORTHO05D001647 7.9e-06 54.3 99 32.3
Eucgr.C01626 Eucalyptus grandis HOM05D001817 ORTHO05D001647 7.9e-06 54.3 100 34.0
Glyma.07G189600 Glycine max HOM05D001817 ORTHO05D001647 7.9e-06 54.3 107 27.1
SEGI_30328 Sequoiadendron giganteum HOM05D001648 ORTHO05D001657 7.9e-06 54.3 103 30.1


User provided reference genes

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