Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 0.0e+00 1678.3 825 100.0
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 1.7e-279 966.1 853 60.0
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 5.0e-258 894.8 817 58.4
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 5.5e-233 811.6 862 51.4
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 5.5e-217 758.4 883 48.2
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.8e-208 729.6 846 49.3
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 6.8e-207 724.9 873 46.3
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 2.9e-205 719.5 861 47.2
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 4.9e-205 718.8 874 46.1
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 2.0e-203 713.4 893 46.5
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 3.5e-203 712.6 874 45.9
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 4.6e-203 712.2 875 45.7
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 7.8e-203 711.4 878 45.9
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 2.3e-202 709.9 876 45.5
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.0e-202 709.5 896 46.8
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 8.6e-202 708.0 896 46.4
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.5e-201 706.4 894 44.6
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 5.6e-201 705.3 869 45.9
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.2e-200 704.1 896 44.5
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 8.0e-200 701.4 869 45.7
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 7.5e-198 694.9 895 44.0
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 9.8e-198 694.5 884 44.5
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 1.9e-196 690.3 854 46.5
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 7.0e-196 688.3 881 45.2
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.0e-195 686.8 889 45.0
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 1.7e-194 683.7 890 45.1
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 3.0e-194 682.9 686 51.9
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 3.9e-194 682.6 875 44.8
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 3.9e-194 682.6 881 44.6
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 4.3e-193 679.1 872 45.9
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 7.3e-193 678.3 885 43.1
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 1.4e-191 674.1 888 43.8
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.4e-191 674.1 898 44.2
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 4.0e-191 672.5 881 44.3
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 2.0e-190 670.2 865 45.2
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 2.0e-190 670.2 876 44.5
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 2.6e-190 669.8 875 44.6
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 3.4e-190 669.5 898 44.0
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 2.2e-189 666.8 901 43.8
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 2.4e-188 663.3 912 43.9
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 9.2e-188 661.4 885 44.0
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 3.3e-185 652.9 855 44.3
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 3.6e-184 649.4 854 45.4
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 3.6e-184 649.4 823 44.8
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 6.2e-184 648.7 878 43.7
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 8.1e-184 648.3 877 43.7
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.1e-183 647.9 838 43.8
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 3.1e-183 646.4 847 44.6
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 4.0e-183 646.0 869 42.9
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 7.6e-182 641.7 873 44.0
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 9.9e-182 641.3 858 44.9
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 9.9e-182 641.3 878 43.3
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 9.9e-182 641.3 882 42.6
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 1.1e-180 637.9 855 44.7
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.4e-180 637.5 901 42.5
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 2.4e-180 636.7 879 43.2
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 7.1e-180 635.2 856 44.2
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.1e-179 633.6 894 42.4
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 6.0e-179 632.1 888 42.6
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 6.0e-179 632.1 888 42.6
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 6.6e-178 628.6 872 42.5
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 1.1e-177 627.9 848 44.2
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.9e-177 627.1 907 41.3
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 2.1e-176 623.6 864 43.2
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 6.2e-176 622.1 897 41.9
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 1.8e-175 620.5 845 43.0
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 2.4e-175 620.2 851 43.1
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 7.6e-174 615.1 876 42.4
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 1.7e-173 614.0 844 43.2
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 1.7e-173 614.0 844 43.2
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 6.4e-173 612.1 857 42.8
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 8.4e-173 611.7 877 42.2
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 9.3e-172 608.2 859 43.2
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 9.3e-172 608.2 910 41.3
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 9.3e-172 608.2 894 41.6
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 1.2e-171 607.8 915 41.1
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 1.6e-171 607.4 897 42.1
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 2.1e-171 607.1 855 42.7
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 7.8e-171 605.1 971 39.5
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 2.3e-170 603.6 859 42.3
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 2.3e-170 603.6 859 42.3
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 5.1e-170 602.4 866 42.7
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.5e-169 600.1 888 41.0
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 2.5e-169 600.1 876 41.6
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 2.4e-167 593.6 868 41.8
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 3.4e-166 589.7 884 41.0
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 3.8e-165 586.3 878 41.3
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 6.4e-165 585.5 888 42.0
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 1.0e-162 578.2 862 40.0
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 5.1e-162 575.9 838 41.3
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 8.1e-160 568.5 930 39.6
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 4.5e-158 562.8 923 40.0
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 7.6e-158 562.0 888 41.4
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 2.1e-155 553.9 815 41.1
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 1.1e-153 548.1 845 41.4
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 7.4e-153 545.4 846 40.1
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 5.8e-150 535.8 747 42.0
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 7.6e-150 535.4 925 37.8
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 6.5e-149 532.3 747 41.9
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 4.2e-148 529.6 761 41.9
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 6.7e-146 522.3 798 39.2
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 1.6e-144 517.7 871 37.3
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 7.6e-142 508.8 744 40.7
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.6e-136 491.1 705 42.1
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 1.1e-135 488.4 617 45.1
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 1.1e-135 488.4 648 43.8
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 3.6e-131 473.4 667 43.3
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 2.0e-118 431.0 562 44.5
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 2.9e-117 427.2 794 35.3
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.2e-116 423.3 639 41.6
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 2.0e-110 404.4 874 34.8
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 5.0e-109 399.8 585 42.1
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 4.0e-106 390.2 656 37.5
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 3.7e-104 383.6 667 37.5
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 5.4e-103 379.8 643 38.6
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 7.0e-103 379.4 521 44.5
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 5.4e-87 326.6 352 49.4
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 1.6e-83 315.1 539 37.8
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.7e-80 305.1 491 40.7
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 1.2e-78 298.9 459 40.7
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 3.5e-78 297.4 565 34.7
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 4.7e-75 287.0 627 33.5
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 8.9e-74 282.7 645 32.7
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 5.8e-73 280.0 642 32.6
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 7.5e-73 279.6 519 36.4
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 2.7e-70 271.2 350 46.6
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 5.8e-65 253.4 662 30.4
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 7.6e-65 253.1 177 71.8
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.6e-62 245.4 209 58.9
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 2.1e-62 245.0 571 31.0
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.7e-61 241.9 278 50.0
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 5.6e-60 236.9 299 46.2
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 4.9e-56 223.8 188 62.8
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 3.9e-53 214.2 184 61.4
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.4e-50 204.9 222 50.0
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 5.4e-47 193.7 229 46.7
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.9e-44 185.3 171 59.1
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 7.9e-38 163.3 177 52.5
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 1.0e-37 162.9 160 53.1
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 3.0e-37 161.4 170 52.4
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 9.6e-36 156.4 342 33.3
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.4e-34 152.5 147 57.1
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 4.0e-34 151.0 127 61.4
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 1.0e-32 146.4 164 52.4
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 2.9e-32 144.8 241 39.8
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 4.9e-32 144.1 164 51.8
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 9.3e-31 139.8 119 56.3
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 1.3e-29 136.0 263 33.5
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 2.5e-28 131.7 118 54.2
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 1.6e-27 129.0 118 52.5
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 1.8e-26 125.6 131 51.1
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 6.9e-26 123.6 133 51.9
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 6.9e-26 123.6 152 49.3
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 2.0e-25 122.1 133 51.1
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 1.3e-24 119.4 91 57.1
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.6e-22 111.3 100 59.0
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 7.9e-22 110.2 196 33.7
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.4e-21 109.4 99 58.6
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.1e-20 106.3 99 57.6
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 5.7e-20 104.0 68 70.6
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 2.2e-19 102.1 257 27.2
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 2.6e-17 95.1 442 24.2
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 8.5e-16 90.1 123 40.7
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 1.9e-15 89.0 325 23.7
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 7.9e-14 83.6 194 32.0
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 7.4e-12 77.0 62 61.3
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 9.7e-12 76.6 130 38.5
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 2.4e-10 72.0 61 60.7
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 2.0e-09 68.9 90 50.0
Cfa027026 Carpinus fangiana HOM05D003758 ORTHO05D004344 2.0e-09 68.9 477 22.0
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 2.0e-09 68.9 141 29.1
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 2.0e-09 68.9 117 42.7
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 5.9e-09 67.4 49 57.1
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 8.5e-08 63.5 117 36.8
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 1.4e-07 62.8 135 32.6
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.2e-07 61.2 64 48.4
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 9.4e-07 60.1 51 62.7
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.6e-06 59.3 59 44.1
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 2.1e-06 58.9 136 27.9


User provided reference genes

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