Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold114G31970 Striga asiatica HOM05D004176 ORTHO05D004845 1.2e-77 293.1 147 100.0
SGA_v2.0_scaffold1019G53794 Striga asiatica HOM05D004176 ORTHO05D004845 8.8e-57 223.8 146 73.3
Migut.M01205 Erythranthe guttata HOM05D004176 ORTHO05D004845 2.2e-52 209.1 145 71.0
MSTRG.15928 Avicennia marina HOM05D004176 ORTHO05D004845 2.7e-50 202.2 147 67.3
Oeu053937.2 Olea europaea HOM05D004176 ORTHO05D004845 4.2e-43 178.3 142 60.6
Lj1A1212T59 Lonicera japonica HOM05D004176 ORTHO05D004845 6.1e-42 174.5 149 54.4
Nitab4.5_0003574g0080 Nicotiana tabacum HOM05D004176 ORTHO05D004845 6.1e-42 174.5 140 56.4
Dinv39813 Davidia involucrata HOM05D004176 ORTHO05D004845 6.7e-41 171.0 146 57.5
CAN.G1181.22 Capsicum annuum HOM05D004176 ORTHO05D004845 1.5e-40 169.9 140 53.6
Cc02_g12520 Coffea canephora HOM05D004176 ORTHO05D004845 2.6e-40 169.1 139 56.8
Dinv40500 Davidia involucrata HOM05D004176 ORTHO05D004845 4.4e-40 168.3 146 56.8
CSS0038663 Camellia sinensis var. sinensis HOM05D004176 ORTHO05D004845 9.7e-40 167.2 150 54.0
Peaxi162Scf00588g00910 Petunia axillaris HOM05D004176 ORTHO05D004845 4.8e-39 164.9 141 51.8
Actinidia05580 Actinidia chinensis HOM05D004176 ORTHO05D004845 6.3e-39 164.5 144 56.9
PGSC0003DMG400022361 Solanum tuberosum HOM05D004176 ORTHO05D004845 2.4e-38 162.5 140 51.4
Atru.chr10.2000 Acer truncatum HOM05D004176 ORTHO05D004845 4.1e-38 161.8 144 51.4
Ciclev10015071m.g Citrus clementina HOM05D004176 ORTHO05D004845 5.3e-38 161.4 145 53.1
Nitab4.5_0003465g0060 Nicotiana tabacum HOM05D004176 ORTHO05D004845 1.2e-37 160.2 141 53.2
unitig_37.g12341 Utricularia gibba HOM05D004176 ORTHO05D001465 1.2e-37 160.2 138 56.5
Sopen03g002640 Solanum pennellii HOM05D004176 ORTHO05D004845 1.6e-37 159.8 143 53.8
Nitab4.5_0007109g0030 Nicotiana tabacum HOM05D004176 ORTHO05D004845 2.6e-37 159.1 141 52.5
Sopen02g023840 Solanum pennellii HOM05D004176 ORTHO05D004845 3.5e-37 158.7 140 49.3
vmacro03824 Vaccinium macrocarpon HOM05D004176 ORTHO05D004845 5.9e-37 157.9 144 54.9
Solyc02g079030.3 Solanum lycopersicum HOM05D004176 ORTHO05D004845 7.7e-37 157.5 140 49.3
Solyc03g006630.3 Solanum lycopersicum HOM05D004176 ORTHO05D004845 7.7e-37 157.5 143 53.1
QL03p053022 Quercus lobata HOM05D004176 ORTHO05D004845 1.0e-36 157.1 143 55.9
COL.COLO4_31573 Corchorus olitorius HOM05D004176 ORTHO05D004845 1.7e-36 156.4 148 48.0
MD10G1302700 Malus domestica HOM05D004176 ORTHO05D004845 2.2e-36 156.0 145 51.7
QL05p081898 Quercus lobata HOM05D004176 ORTHO05D004845 2.9e-36 155.6 143 56.6
Thecc.06G198200 Theobroma cacao HOM05D004176 ORTHO05D004845 3.8e-36 155.2 143 51.0
PGSC0003DMG400005056 Solanum tuberosum HOM05D004176 ORTHO05D004845 6.5e-36 154.5 144 52.8
Potri.011G043500 Populus trichocarpa HOM05D004176 ORTHO05D004845 1.9e-35 152.9 149 51.7
Manes.16G021200 Manihot esculenta HOM05D004176 ORTHO05D004845 2.5e-35 152.5 145 51.0
MD05G1324900 Malus domestica HOM05D004176 ORTHO05D004845 5.5e-35 151.4 140 52.9
Prupe.4G036200 Prunus persica HOM05D004176 ORTHO05D004845 7.2e-35 151.0 145 51.0
Gorai.011G022500 Gossypium raimondii HOM05D004176 ORTHO05D004845 1.2e-34 150.2 144 52.1
GSVIVG01003211001 Vitis vinifera HOM05D004176 ORTHO05D004845 1.2e-34 150.2 144 49.3
TWI63G1567 Tripterygium wilfordii HOM05D004176 ORTHO05D004845 2.1e-34 149.4 143 49.0
Gohir.A10G020600 Gossypium hirsutum HOM05D004176 ORTHO05D004845 3.6e-34 148.7 144 52.8
Duzib235G1328 Durio zibethinus HOM05D004176 ORTHO05D004845 4.7e-34 148.3 143 49.7
Gohir.D10G021400 Gossypium hirsutum HOM05D004176 ORTHO05D004845 4.7e-34 148.3 144 52.1
DCAR_028122 Daucus carota HOM05D004176 ORTHO05D004845 6.1e-34 147.9 140 50.7
Sc05g0010010 Simmondsia chinensis HOM05D004176 ORTHO05D004845 8.0e-34 147.5 142 46.5
Sc05g0008050 Simmondsia chinensis HOM05D004176 ORTHO05D004845 1.0e-33 147.1 142 46.5
DCAR_024886 Daucus carota HOM05D004176 ORTHO05D004845 1.8e-33 146.4 144 50.0
ECA248G3644 Erigeron canadensis HOM05D004176 ORTHO05D004845 1.8e-33 146.4 148 52.7
Lsat_1_v5_gn_4_57180 Lactuca sativa HOM05D004176 ORTHO05D004845 3.0e-33 145.6 146 53.4
CANSAT56G2709 Cannabis sativa HOM05D004176 ORTHO05D004845 8.8e-33 144.1 140 47.9
RcHm_v2.0_Chr5g0006561 Rosa chinensis HOM05D004176 ORTHO05D004845 8.8e-33 144.1 141 51.8
Gohir.A05G165100 Gossypium hirsutum HOM05D004176 ORTHO05D004845 1.5e-32 143.3 142 49.3
CiPaw.09G158600 Carya illinoinensis HOM05D004176 ORTHO05D004845 2.0e-32 142.9 140 50.0
PGR042G0018 Punica granatum HOM05D004176 ORTHO05D004845 3.3e-32 142.1 147 46.3
Carub.0007s1987 Capsella rubella HOM05D004176 ORTHO05D004845 4.4e-32 141.7 143 46.9
Lsat_1_v5_gn_1_126440 Lactuca sativa HOM05D004176 ORTHO05D004845 7.5e-32 141.0 150 48.7
EL10Ac8g20615 Beta vulgaris HOM05D004176 ORTHO05D004845 2.2e-31 139.4 148 45.3
Haze_06566 Corylus avellana HOM05D004176 ORTHO05D004845 2.2e-31 139.4 140 48.6
Gohir.D05G168100 Gossypium hirsutum HOM05D004176 ORTHO05D004845 2.8e-31 139.0 142 47.9
HanXRQChr01g0005541 Helianthus annuus HOM05D004176 ORTHO05D004845 2.8e-31 139.0 151 48.3
HanXRQChr16g0517801 Helianthus annuus HOM05D004176 ORTHO05D004845 2.8e-31 139.0 148 48.6
RcHm_v2.0_Chr5g0007951 Rosa chinensis HOM05D004176 ORTHO05D004845 3.7e-31 138.7 129 54.3
PSO675G5031 Papaver somniferum HOM05D004176 ORTHO05D004845 6.3e-31 137.9 149 49.7
Peaxi162Scf00137g00128 Petunia axillaris HOM05D004176 ORTHO05D004845 6.3e-31 137.9 143 52.4
FAN11G1228 Fragaria x ananassa HOM05D004176 ORTHO05D004845 8.2e-31 137.5 141 49.6
Sp7g19660 Schrenkiella parvula HOM05D004176 ORTHO05D004845 1.1e-30 137.1 143 45.5
Gorai.009G173200 Gossypium raimondii HOM05D004176 ORTHO05D004845 1.4e-30 136.7 142 47.9
TAR624G0327 Trochodendron aralioides HOM05D004176 ORTHO05D004845 1.8e-30 136.3 145 46.2
VMungo0251G0350 Vigna mungo HOM05D004176 ORTHO05D004845 3.1e-30 135.6 149 43.0
Nn1g06749 Nelumbo nucifera HOM05D004176 ORTHO05D004845 4.1e-30 135.2 148 46.6
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 7.0e-30 134.4 140 46.4
AUR62014726 Chenopodium quinoa HOM05D004176 ORTHO05D004845 1.2e-29 133.7 146 44.5
FAN16G2426 Fragaria x ananassa HOM05D004176 ORTHO05D004845 1.2e-29 133.7 141 48.9
Nn1g03915 Nelumbo nucifera HOM05D004176 ORTHO05D004845 1.2e-29 133.7 145 47.6
AL7G32480 Arabidopsis lyrata HOM05D004176 ORTHO05D004845 1.6e-29 133.3 143 44.8
Phvul.002G222800 Phaseolus vulgaris HOM05D004176 ORTHO05D004845 1.6e-29 133.3 149 42.3
CARHR228210 Cardamine hirsuta HOM05D004176 ORTHO05D004845 2.7e-29 132.5 143 44.1
FvH4_3g04090 Fragaria vesca HOM05D004176 ORTHO05D004845 2.7e-29 132.5 144 47.9
FAN25G2335 Fragaria x ananassa HOM05D004176 ORTHO05D004845 2.7e-29 132.5 141 48.9
BcaC06g30667 Brassica carinata HOM05D004176 ORTHO05D004845 4.5e-29 131.7 144 45.8
Lj6g0015878 Lotus japonicus HOM05D004176 ORTHO05D004845 4.5e-29 131.7 143 43.4
Thhalv10025052m.g Eutrema salsugineum HOM05D004176 ORTHO05D004845 1.3e-28 130.2 143 43.4
VMungo0540G2164 Vigna mungo HOM05D004176 ORTHO05D004845 1.3e-28 130.2 143 46.9
FAN21G0123 Fragaria x ananassa HOM05D004176 ORTHO05D004845 1.7e-28 129.8 141 48.2
MBI18_g07595_MAGBIO Magnolia biondii HOM05D004176 ORTHO05D004845 1.7e-28 129.8 142 43.7
Glyma.08G058400 Glycine max HOM05D004176 ORTHO05D004845 2.2e-28 129.4 149 43.0
Glyma.15G067800 Glycine max HOM05D004176 ORTHO05D004845 2.2e-28 129.4 143 44.8
Phvul.006G191800 Phaseolus vulgaris HOM05D004176 ORTHO05D004845 2.9e-28 129.0 144 47.2
AT4G21540 Arabidopsis thaliana HOM05D004176 ORTHO05D004845 6.5e-28 127.9 143 43.4
A03p52810 Brassica napus HOM05D004176 ORTHO05D004845 8.5e-28 127.5 145 44.1
BraA03t14357Z Brassica rapa HOM05D004176 ORTHO05D004845 8.5e-28 127.5 145 44.1
Ca_00256_v3 Cicer arietinum L. HOM05D004176 ORTHO05D004845 1.1e-27 127.1 140 44.3
Psat1g208320 Pisum sativum HOM05D004176 ORTHO05D004845 1.1e-27 127.1 143 42.7
Hund23626 Selenicereus undatus HOM05D004176 ORTHO05D004845 1.1e-27 127.1 144 46.5
Ah.14g088950 Amaranthus hybridus HOM05D004176 ORTHO05D004845 1.5e-27 126.7 146 43.2
Aqoxy1G02747 Aquilegia oxysepala HOM05D004176 ORTHO05D004845 1.5e-27 126.7 123 50.4
Nitab4.5_0021410g0010 Nicotiana tabacum HOM05D004176 ORTHO05D004845 1.9e-27 126.3 140 45.0
THA.LOC104806277 Tarenaya hassleriana HOM05D004176 ORTHO05D004845 2.5e-27 125.9 144 44.4
C07p51250 Brassica napus HOM05D004176 ORTHO05D004845 3.2e-27 125.6 146 43.2
Medtr2g011820 Medicago truncatula HOM05D004176 ORTHO05D004845 5.5e-27 124.8 143 42.0
AT4G21534 Arabidopsis thaliana HOM05D004176 ORTHO05D004845 7.2e-27 124.4 147 44.9
arahy.Tifrunner.gnm1.ann1.IP4RNA Arachis hypogaea HOM05D004176 ORTHO05D004845 9.4e-27 124.0 140 44.3
arahy.Tifrunner.gnm1.ann1.YND711 Arachis hypogaea HOM05D004176 ORTHO05D004845 9.4e-27 124.0 140 44.3
Sed0001897 Sechium edule HOM05D004176 ORTHO05D004845 1.6e-26 123.2 135 43.7
Lalb_Chr20g0122261 Lupinus albus HOM05D004176 ORTHO05D004845 2.7e-26 122.5 143 43.4
AL7G32490 Arabidopsis lyrata HOM05D004176 ORTHO05D004845 3.6e-26 122.1 146 42.5
HPP92_014068 Vanilla planifolia HOM05D001107 ORTHO05D004845 3.6e-26 122.1 146 42.5
BcaNung00853 Brassica carinata HOM05D004176 ORTHO05D004845 4.7e-26 121.7 145 42.8
MELO3C007311.2 Cucumis melo HOM05D004176 ORTHO05D004845 4.7e-26 121.7 149 40.9
CsaV3_6G049850 Cucumis sativus L. HOM05D004176 ORTHO05D004845 8.0e-26 120.9 135 41.5
Carub.0007s1988 Capsella rubella HOM05D004176 ORTHO05D004845 3.0e-25 119.0 144 44.4
Sabra11G0030100 Salix brachista HOM05D004176 ORTHO05D004845 5.2e-25 118.2 146 45.9
Lalb_Chr05g0218191 Lupinus albus HOM05D004176 ORTHO05D004845 6.8e-25 117.9 144 41.7
Lalb_Chr18g0059921 Lupinus albus HOM05D004176 ORTHO05D004845 6.8e-25 117.9 143 43.4
BcaC01g00694 Brassica carinata HOM05D004176 ORTHO05D004845 1.5e-24 116.7 151 44.4
BraA08t33492Z Brassica rapa HOM05D004176 ORTHO05D004845 1.5e-24 116.7 151 44.4
A08p15120 Brassica napus HOM05D004176 ORTHO05D004845 2.0e-24 116.3 151 44.4
C03p83270 Brassica napus HOM05D004176 ORTHO05D004845 2.6e-24 115.9 151 44.4
BolC3t20608H Brassica oleracea HOM05D004176 ORTHO05D004845 2.6e-24 115.9 151 44.4
CDE05G0007 Ceratophyllum demersum HOM05D004176 ORTHO05D004845 2.6e-24 115.9 146 38.4
BcaB03g11691 Brassica carinata HOM05D004176 ORTHO05D004845 9.8e-24 114.0 151 43.0
CARHR228200 Cardamine hirsuta HOM05D004176 ORTHO05D004845 9.8e-24 114.0 141 43.3
TPR.G36758 Trifolium pratense HOM05D004176 ORTHO05D004845 2.2e-23 112.8 166 38.0
Eucgr.E03472 Eucalyptus grandis HOM05D004176 ORTHO05D004845 2.8e-23 112.5 145 42.8
Eucgr.E03468 Eucalyptus grandis HOM05D004176 ORTHO05D004845 3.7e-23 112.1 143 43.4
ECA234G4776 Erigeron canadensis HOM05D004176 ORTHO05D004845 1.8e-22 109.8 100 52.0
Thhalv10025046m.g Eutrema salsugineum HOM05D004176 ORTHO05D004845 1.8e-22 109.8 144 43.8
Sp7g19650 Schrenkiella parvula HOM05D004176 ORTHO05D004845 1.8e-22 109.8 144 41.7
CAN.G289.28 Capsicum annuum HOM05D004176 ORTHO05D004845 2.4e-22 109.4 73 63.0
HPP92_001807 Vanilla planifolia HOM05D004176 ORTHO05D004845 9.1e-22 107.5 132 43.9
ATR0693G103 Amborella trichopoda HOM05D004176 ORTHO05D004845 1.6e-21 106.7 140 37.1
Actinidia01934 Actinidia chinensis HOM05D004176 ORTHO05D004845 1.5e-19 100.1 144 43.1
Zm00001eb106910 Zea mays HOM05D004176 ORTHO05D004845 3.0e-17 92.4 151 34.4
BcaB01g03408 Brassica carinata HOM05D003294 ORTHO05D004060 3.4e-16 89.0 145 36.6
Pp3c1_27360 Physcomitrium patens HOM05D004176 ORTHO05D004845 1.3e-15 87.0 143 34.3
Zm00001eb324260 Zea mays HOM05D004176 ORTHO05D004845 1.7e-15 86.7 152 33.6
Pp3c10_6970 Physcomitrium patens HOM05D004176 ORTHO05D004845 5.4e-14 81.6 142 31.0
Mapoly0139s0005 Marchantia polymorpha HOM05D004176 ORTHO05D004845 7.0e-14 81.3 146 30.8
Os01g0782200 Oryza sativa ssp. japonica HOM05D004176 ORTHO05D004845 1.6e-13 80.1 167 30.5
HPP92_000922 Vanilla planifolia HOM05D004176 ORTHO05D004845 4.7e-10 68.6 99 38.4
Glyma.13G246000 Glycine max HOM05D004176 ORTHO05D004845 1.0e-09 67.4 63 52.4
AUR62016908 Chenopodium quinoa HOM05D004176 ORTHO05D004845 1.8e-09 66.6 102 35.3


User provided reference genes

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