Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 1.1e-136 490.0 247 100.0
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 1.6e-103 379.8 215 87.0
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 3.7e-100 368.6 236 78.8
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 7.7e-98 360.9 215 80.0
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 1.1e-91 340.5 218 75.2
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 1.8e-91 339.7 217 77.4
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 1.8e-91 339.7 211 75.8
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 7.0e-91 337.8 215 76.3
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 4.5e-90 335.1 218 74.3
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 5.9e-90 334.7 217 74.7
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.0e-89 334.0 210 75.2
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 1.0e-89 334.0 214 75.7
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 2.2e-89 332.8 214 75.2
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 5.0e-89 331.6 220 74.1
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 6.5e-89 331.3 217 74.2
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 1.6e-87 326.6 246 68.3
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 2.7e-87 325.9 220 73.6
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 1.0e-86 323.9 216 72.2
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 6.8e-86 321.2 217 72.4
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.2e-85 320.5 217 72.4
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 7.5e-85 317.8 232 69.4
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 2.8e-84 315.8 218 71.1
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 1.1e-83 313.9 200 78.5
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 1.4e-83 313.5 203 72.4
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 1.8e-83 313.2 215 71.2
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 1.8e-83 313.2 217 71.9
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 4.1e-83 312.0 217 71.4
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 5.4e-83 311.6 206 71.8
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 1.0e-81 307.4 219 70.3
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.7e-81 306.6 202 73.8
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.7e-81 306.6 218 68.8
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 5.0e-81 305.1 217 69.6
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 5.0e-81 305.1 216 69.0
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 8.6e-81 304.3 213 69.0
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 8.6e-81 304.3 217 68.7
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 8.6e-81 304.3 217 68.7
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 4.2e-80 302.0 217 69.1
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 4.2e-80 302.0 215 70.2
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 5.5e-80 301.6 217 68.7
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 2.1e-79 299.7 218 67.0
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.1e-79 299.7 217 68.2
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 2.1e-79 299.7 221 68.8
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 4.7e-79 298.5 217 68.2
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 6.1e-79 298.1 222 67.1
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 1.4e-78 297.0 216 67.1
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 4.0e-78 295.4 215 67.0
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 6.8e-78 294.7 218 67.0
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 6.8e-78 294.7 212 67.5
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 1.5e-77 293.5 239 63.6
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 1.5e-77 293.5 204 67.2
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.6e-77 292.7 212 67.5
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 2.6e-77 292.7 212 67.5
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 2.6e-77 292.7 226 64.2
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 2.6e-77 292.7 212 67.9
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 3.4e-77 292.4 218 68.3
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 4.4e-77 292.0 212 65.6
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 5.7e-77 291.6 214 66.4
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 7.5e-77 291.2 228 63.6
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 2.2e-76 289.7 216 66.2
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 3.7e-76 288.9 213 67.1
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 4.9e-76 288.5 219 68.5
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 6.3e-76 288.1 212 66.5
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 1.1e-75 287.3 213 68.5
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 2.4e-75 286.2 228 62.7
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 5.4e-75 285.0 219 67.1
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 1.2e-74 283.9 218 63.3
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 3.5e-74 282.3 188 68.6
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.3e-73 280.4 189 69.3
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 1.3e-73 280.4 223 61.9
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 1.3e-73 280.4 212 63.2
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 2.3e-73 279.6 213 66.2
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 2.3e-73 279.6 218 62.4
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 6.6e-73 278.1 199 66.3
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 6.6e-73 278.1 207 63.8
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 8.6e-73 277.7 215 62.8
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 1.1e-72 277.3 221 62.0
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 1.1e-72 277.3 215 64.7
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 1.5e-72 276.9 212 65.1
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 1.5e-72 276.9 216 63.9
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 1.9e-72 276.6 212 64.2
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 2.5e-72 276.2 217 65.0
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 3.3e-72 275.8 215 62.8
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 3.3e-72 275.8 215 63.3
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 4.3e-72 275.4 188 67.6
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 9.5e-72 274.2 225 60.4
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 9.5e-72 274.2 225 60.4
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 9.5e-72 274.2 225 60.4
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 1.2e-71 273.9 216 60.2
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 1.6e-71 273.5 215 62.8
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 2.8e-71 272.7 225 59.6
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 2.8e-71 272.7 225 59.6
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 6.1e-71 271.6 199 67.8
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 6.1e-71 271.6 224 59.4
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 1.4e-70 270.4 219 63.9
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 1.8e-70 270.0 224 59.4
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 4.0e-70 268.9 221 60.2
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 4.0e-70 268.9 214 65.0
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 5.2e-70 268.5 225 59.1
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 5.2e-70 268.5 213 66.7
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 8.9e-70 267.7 220 59.1
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 1.5e-69 266.9 225 58.7
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 3.4e-69 265.8 179 68.2
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 5.8e-69 265.0 222 59.5
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 5.8e-69 265.0 188 64.4
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 5.8e-69 265.0 172 72.1
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 5.8e-69 265.0 215 62.8
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 7.5e-69 264.6 223 59.6
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 2.4e-67 259.6 217 58.5
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 2.4e-67 259.6 177 67.8
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 2.4e-67 259.6 220 59.5
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 4.1e-67 258.8 222 58.1
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 1.6e-66 256.9 230 58.3
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 2.0e-66 256.5 184 67.9
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 1.9e-64 250.0 232 58.2
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 2.5e-64 249.6 212 60.8
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 2.8e-63 246.1 215 55.3
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 3.1e-62 242.7 220 60.0
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 4.0e-62 242.3 217 58.5
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.4e-59 233.0 257 51.4
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.4e-59 233.0 257 51.4
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 2.7e-58 229.6 181 65.2
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 1.7e-57 226.9 143 76.2
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 5.6e-56 221.9 146 71.9
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 5.6e-56 221.9 163 65.6
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 2.9e-52 209.5 144 67.4
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 1.9e-51 206.8 151 72.8
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 1.5e-48 197.2 168 53.6
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 4.3e-48 195.7 158 58.9
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 4.3e-48 195.7 141 66.7
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 6.8e-46 188.3 143 66.4
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 2.0e-45 186.8 152 63.2
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 4.4e-45 185.7 218 41.3
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 2.9e-44 183.0 256 39.1
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 3.9e-41 172.6 124 63.7
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 4.3e-40 169.1 141 54.6
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 2.8e-39 166.4 216 46.8
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 3.1e-38 162.9 178 43.8
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 1.2e-37 161.0 178 42.1
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 1.1e-35 154.5 204 39.2
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 1.4e-35 154.1 122 62.3
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 7.1e-35 151.8 149 42.3
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 3.9e-33 146.0 107 62.6
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 1.5e-32 144.1 155 41.9
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 4.0e-30 136.0 89 74.2
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 9.9e-29 131.3 167 41.3
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 4.5e-21 105.9 74 63.5
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 1.9e-19 100.5 77 58.4
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 7.1e-19 98.6 149 33.6
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 2.1e-15 87.0 49 79.6
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 8.2e-15 85.1 69 52.2
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 1.4e-14 84.3 65 58.5
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 4.1e-14 82.8 75 56.0
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 1.2e-13 81.3 49 69.4
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 1.0e-12 78.2 49 67.3
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 3.8e-12 76.3 44 70.5
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 6.5e-12 75.5 76 53.9
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 1.6e-10 70.9 52 61.5
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 1.6e-10 70.9 58 53.4
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 6.1e-10 68.9 71 56.3
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 9.7e-08 61.6 44 63.6
CAN.G530.9 Capsicum annuum HOM05D000115 ORTHO05D000645 1.3e-07 61.2 38 73.7
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 1.6e-07 60.8 91 34.1
CSS0040420 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.8e-06 57.4 97 30.9
Hma1.2p1_0099F.1_g048970 Hydrangea macrophylla HOM05D001543 ORTHO05D001722 1.8e-06 57.4 66 42.4
Rhsim03G0179900 Rhododendron simsii HOM05D003145 ORTHO05D003586 1.8e-06 57.4 82 35.4
CSS0043481 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 2.4e-06 57.0 97 32.0
Lsat_1_v5_gn_8_8220 Lactuca sativa HOM05D001543 ORTHO05D001722 2.4e-06 57.0 66 39.4
CSS0022791 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 3.1e-06 56.6 97 30.9
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 3.1e-06 56.6 97 30.9
EL10Ac4g07530 Beta vulgaris HOM05D000285 ORTHO05D000241 5.3e-06 55.8 69 37.7
A08p00730 Brassica napus HOM05D001283 ORTHO05D001109 5.3e-06 55.8 90 28.9
Actinidia37137 Actinidia chinensis HOM05D000285 ORTHO05D000241 6.9e-06 55.5 79 34.2
CANSAT21G2006 Cannabis sativa HOM05D000285 ORTHO05D000241 6.9e-06 55.5 70 40.0


User provided reference genes

Program Settings