Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 5.1e-123 444.5 238 100.0
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 9.1e-80 300.8 230 70.9
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 3.8e-78 295.4 235 69.4
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 3.7e-73 278.9 256 65.2
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 1.4e-72 276.9 266 62.0
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 6.6e-70 268.1 235 63.8
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 1.5e-69 266.9 230 64.8
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 2.5e-69 266.2 235 63.4
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 1.3e-65 253.8 233 61.8
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 1.3e-65 253.8 239 62.3
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 4.9e-65 251.9 234 60.7
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 1.0e-62 244.2 264 54.9
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 3.8e-62 242.3 232 60.3
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 2.1e-60 236.5 238 61.3
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 3.1e-59 232.6 242 57.4
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 4.0e-59 232.3 226 59.3
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 6.8e-59 231.5 227 59.0
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 2.6e-58 229.6 235 57.0
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 7.5e-58 228.0 219 60.7
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 2.2e-57 226.5 340 44.4
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 3.7e-57 225.7 237 56.1
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 5.4e-56 221.9 239 57.3
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 7.0e-56 221.5 238 55.5
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 2.0e-55 219.9 234 56.4
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 2.0e-55 219.9 253 53.8
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 2.7e-55 219.5 239 57.3
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 3.5e-55 219.2 244 54.5
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.5e-55 219.2 239 56.9
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 4.6e-55 218.8 234 55.1
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 4.6e-55 218.8 221 56.6
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 6.0e-55 218.4 240 54.6
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 6.0e-55 218.4 238 56.3
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 6.0e-55 218.4 239 56.9
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 7.8e-55 218.0 235 56.2
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.3e-54 217.2 244 56.6
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 2.3e-54 216.5 234 56.0
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 3.0e-54 216.1 231 55.8
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 5.0e-54 215.3 238 56.7
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 6.6e-54 214.9 243 55.1
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 6.6e-54 214.9 236 57.2
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.1e-53 214.2 235 56.2
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.9e-53 213.4 234 55.1
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 2.5e-53 213.0 226 55.8
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 4.3e-53 212.2 236 54.7
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 5.6e-53 211.8 240 55.4
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.6e-52 210.3 238 56.7
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 2.8e-52 209.5 232 55.2
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.8e-52 209.5 226 54.4
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.6e-52 209.1 238 54.6
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.6e-52 209.1 238 56.3
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 6.2e-52 208.4 224 56.2
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 6.2e-52 208.4 225 58.2
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 8.0e-52 208.0 228 56.6
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 1.4e-51 207.2 241 54.4
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 3.1e-51 206.1 234 55.1
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 4.0e-51 205.7 234 55.1
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 5.2e-51 205.3 230 55.2
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.2e-50 204.1 236 53.0
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 2.0e-50 203.4 273 48.0
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 2.0e-50 203.4 237 54.9
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 3.4e-50 202.6 185 60.5
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 3.4e-50 202.6 185 60.5
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 7.5e-50 201.4 222 57.2
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 2.2e-49 199.9 227 53.3
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 1.1e-48 197.6 234 53.4
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.1e-48 197.6 232 53.9
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.1e-48 197.6 232 53.9
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 4.1e-48 195.7 231 51.9
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 5.4e-48 195.3 222 51.4
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 9.2e-48 194.5 235 53.2
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 9.2e-48 194.5 219 55.3
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 1.2e-47 194.1 235 53.2
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.6e-47 193.7 231 51.1
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 3.5e-47 192.6 236 52.5
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 4.6e-47 192.2 243 50.6
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 4.6e-47 192.2 243 51.9
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 6.0e-47 191.8 238 51.7
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.3e-46 190.7 242 52.5
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 1.7e-46 190.3 243 51.9
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 2.3e-46 189.9 227 55.1
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 3.0e-46 189.5 208 54.3
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 3.0e-46 189.5 226 52.7
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 5.1e-46 188.7 286 46.5
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 1.9e-45 186.8 235 51.9
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 1.9e-45 186.8 249 49.4
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 1.9e-45 186.8 235 51.9
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.5e-45 186.4 235 51.9
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 2.5e-45 186.4 243 51.4
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 4.3e-45 185.7 189 56.1
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 4.3e-45 185.7 224 50.4
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 5.6e-45 185.3 232 51.7
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 7.3e-45 184.9 235 51.5
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 7.3e-45 184.9 235 51.5
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 9.5e-45 184.5 232 51.3
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 9.5e-45 184.5 236 46.6
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 1.6e-44 183.7 229 52.8
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 3.6e-44 182.6 230 51.3
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 8.1e-44 181.4 240 50.4
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 5.2e-43 178.7 239 49.4
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 1.2e-42 177.6 162 64.8
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 1.2e-42 177.6 242 47.9
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 2.6e-42 176.4 231 49.4
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 7.5e-42 174.9 230 50.9
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 9.9e-42 174.5 234 48.3
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 2.2e-41 173.3 214 51.9
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.9e-40 170.2 226 49.1
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 4.1e-40 169.1 233 47.6
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 4.1e-40 169.1 241 51.0
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 1.2e-39 167.5 237 46.8
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 1.2e-39 167.5 237 46.8
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 7.8e-39 164.9 237 48.9
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 7.8e-39 164.9 237 48.9
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 7.8e-39 164.9 237 48.9
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 2.3e-38 163.3 251 45.4
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 2.3e-38 163.3 251 45.4
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 5.1e-38 162.2 215 48.8
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 9.5e-37 157.9 234 45.7
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 1.2e-36 157.5 223 48.4
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 1.6e-36 157.1 235 44.3
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 1.6e-36 157.1 234 46.6
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 4.7e-36 155.6 197 50.8
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.5e-34 150.6 171 56.1
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 9.9e-34 147.9 224 48.7
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 6.6e-30 135.2 223 43.9
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 4.3e-29 132.5 158 54.4
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 3.1e-27 126.3 325 35.7
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 7.6e-26 121.7 221 40.3
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 1.3e-25 120.9 107 62.6
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 3.8e-25 119.4 269 39.4
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 1.9e-24 117.1 218 41.3
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 1.2e-23 114.4 140 51.4
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 1.5e-21 107.5 156 49.4
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 9.6e-21 104.8 158 51.9
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 4.8e-20 102.4 217 36.4
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 5.3e-19 99.0 130 48.5
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 2.3e-14 83.6 91 51.6
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 2.1e-12 77.0 124 47.6
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 6.2e-12 75.5 87 50.6
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 8.1e-12 75.1 84 53.6
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.0e-10 70.5 45 77.8
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 4.5e-10 69.3 45 77.8
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 2.2e-09 67.0 120 41.7
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 2.9e-09 66.6 50 68.0
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 6.4e-09 65.5 91 44.0
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 8.4e-09 65.1 148 35.1
Lsat_1_v5_gn_2_102640 Lactuca sativa HOM05D004799 ORTHO05D005500 3.5e-07 59.7 64 57.8
Lsat_1_v5_gn_8_72721 Lactuca sativa HOM05D004799 ORTHO05D005500 1.3e-06 57.8 58 60.3
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 3.9e-06 56.2 68 50.0
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 3.9e-06 56.2 68 50.0
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 3.9e-06 56.2 209 29.2
Ah.13g066130 Amaranthus hybridus HOM05D004799 ORTHO05D005500 5.1e-06 55.8 50 64.0


User provided reference genes

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