Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold110G31286 Striga asiatica HOM05D003431 ORTHO05D005152 2.2e-126 455.7 234 100.0
SGA_v2.0_scaffold1G00326 Striga asiatica HOM05D003431 ORTHO05D005152 1.9e-74 283.1 215 72.1
MSTRG.16533 Avicennia marina HOM05D003431 ORTHO05D005152 6.9e-72 274.6 215 68.4
Oeu000195.1 Olea europaea HOM05D003431 ORTHO05D005152 2.4e-69 266.2 215 65.1
Migut.B00667 Erythranthe guttata HOM05D003431 ORTHO05D005152 1.0e-67 260.8 215 64.7
Cc02_g22270 Coffea canephora HOM05D003431 ORTHO05D005152 4.3e-66 255.4 215 62.3
Dinv24261 Davidia involucrata HOM05D003431 ORTHO05D005152 4.3e-66 255.4 215 64.2
Hma1.2p1_0557F.1_g178330 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 4.8e-65 251.9 212 63.2
Hma1.2p1_0557F.1_g178340 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 4.8e-65 251.9 212 63.2
Hma1.2p1_2850F.1_g329406 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 4.8e-65 251.9 212 63.2
CSS0006665 Camellia sinensis var. sinensis HOM05D003431 ORTHO05D005152 2.4e-64 249.6 215 61.9
DCAR_013995 Daucus carota HOM05D003431 ORTHO05D005152 2.4e-64 249.6 212 61.8
vmacro01777 Vaccinium macrocarpon HOM05D003431 ORTHO05D005152 3.1e-64 249.2 212 63.2
SalBow6G0908 Salvia bowleyana HOM05D003431 ORTHO05D005152 9.0e-64 247.7 215 60.0
PGSC0003DMG400023745 Solanum tuberosum HOM05D003431 ORTHO05D005152 1.5e-63 246.9 215 59.5
Nitab4.5_0010140g0020 Nicotiana tabacum HOM05D003431 ORTHO05D005152 2.6e-63 246.1 213 59.6
Sopen01g046970 Solanum pennellii HOM05D003431 ORTHO05D005152 3.4e-63 245.7 215 59.1
unitig_22.g6119 Utricularia gibba HOM05D003431 ORTHO05D005152 7.6e-63 244.6 215 60.0
Manes.10G132200 Manihot esculenta HOM05D003431 ORTHO05D005152 1.0e-62 244.2 211 61.6
Solyc01g104470.3 Solanum lycopersicum HOM05D003431 ORTHO05D005152 1.0e-62 244.2 215 59.1
Atru.chr6.1079 Acer truncatum HOM05D003431 ORTHO05D005152 1.7e-62 243.4 215 60.0
Lsat_1_v5_gn_7_77981 Lactuca sativa HOM05D003431 ORTHO05D005152 2.2e-62 243.0 212 61.3
MBI15_g28822_MAGBIO Magnolia biondii HOM05D003431 ORTHO05D005152 2.2e-62 243.0 212 61.3
CDE12G0598 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 4.9e-62 241.9 212 59.9
Atru.chr6.1030 Acer truncatum HOM05D003431 ORTHO05D005152 6.5e-62 241.5 215 59.1
Peaxi162Scf00011g00014 Petunia axillaris HOM05D003431 ORTHO05D005152 6.5e-62 241.5 212 59.9
ECA236G3864 Erigeron canadensis HOM05D003431 ORTHO05D005152 1.4e-61 240.4 212 59.9
Sabra11G0143500 Salix brachista HOM05D003431 ORTHO05D005152 1.4e-61 240.4 215 60.5
GSVIVG01023018001 Vitis vinifera HOM05D003431 ORTHO05D005152 1.9e-61 240.0 215 60.0
Actinidia39056 Actinidia chinensis HOM05D003431 ORTHO05D005152 2.5e-61 239.6 215 60.9
HanXRQChr03g0066511 Helianthus annuus HOM05D003431 ORTHO05D005152 2.5e-61 239.6 212 59.9
Potri.011G156300 Populus trichocarpa HOM05D003431 ORTHO05D005152 2.5e-61 239.6 215 59.5
TAR633G0411 Trochodendron aralioides HOM05D003431 ORTHO05D005152 2.5e-61 239.6 212 60.8
CiPaw.05G042700 Carya illinoinensis HOM05D003431 ORTHO05D005152 4.2e-61 238.8 219 59.8
Manes.07G013300 Manihot esculenta HOM05D003431 ORTHO05D005152 5.5e-61 238.4 210 60.5
Rhsim11G0131700 Rhododendron simsii HOM05D003431 ORTHO05D005152 5.5e-61 238.4 214 59.8
Potri.001G460100 Populus trichocarpa HOM05D003431 ORTHO05D005152 1.6e-60 236.9 215 59.5
QL02p098641 Quercus lobata HOM05D003431 ORTHO05D005152 1.6e-60 236.9 215 60.0
Sabra16G0311800 Salix brachista HOM05D003431 ORTHO05D005152 2.1e-60 236.5 212 59.9
HanXRQChr01g0021831 Helianthus annuus HOM05D003431 ORTHO05D005152 2.7e-60 236.1 212 59.4
CiPaw.06G149000 Carya illinoinensis HOM05D003431 ORTHO05D005152 3.5e-60 235.7 208 60.1
Lj6g0011327 Lotus japonicus HOM05D003431 ORTHO05D005152 6.0e-60 235.0 215 59.1
MD08G1225200 Malus domestica HOM05D003431 ORTHO05D005152 1.0e-59 234.2 215 58.6
Lj9A308T36 Lonicera japonica HOM05D003431 ORTHO05D005152 1.3e-59 233.8 212 59.4
PSO170G4153 Papaver somniferum HOM05D003431 ORTHO05D005152 1.3e-59 233.8 212 59.9
Haze_13054 Corylus avellana HOM05D003431 ORTHO05D005152 1.8e-59 233.4 210 59.5
Aqoxy4G02442 Aquilegia oxysepala HOM05D003431 ORTHO05D005152 3.9e-59 232.3 212 59.4
VMungo0540G2199 Vigna mungo HOM05D003431 ORTHO05D005152 3.9e-59 232.3 211 58.8
Cfa014508 Carpinus fangiana HOM05D003431 ORTHO05D005152 5.1e-59 231.9 210 59.0
MD15G1418800 Malus domestica HOM05D003431 ORTHO05D005152 1.1e-58 230.7 215 58.1
CANSAT11G1865 Cannabis sativa HOM05D003431 ORTHO05D005152 1.5e-58 230.3 215 57.2
Ciclev10002376m.g Citrus clementina HOM05D003431 ORTHO05D005152 1.5e-58 230.3 214 57.5
PSO017G6291 Papaver somniferum HOM05D003431 ORTHO05D005152 1.5e-58 230.3 212 59.4
Duzib132G0664 Durio zibethinus HOM05D003431 ORTHO05D005152 1.9e-58 229.9 215 57.2
Eucgr.I02710 Eucalyptus grandis HOM05D003431 ORTHO05D005152 1.9e-58 229.9 215 58.1
Ca_00090_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 2.5e-58 229.6 215 56.3
Ca_29929_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 2.5e-58 229.6 215 56.3
Sc11g0006640 Simmondsia chinensis HOM05D003431 ORTHO05D005152 2.5e-58 229.6 211 58.3
TWI14G0641 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 2.5e-58 229.6 208 59.6
arahy.Tifrunner.gnm1.ann1.I5HCXG Arachis hypogaea HOM05D003431 ORTHO05D005152 3.3e-58 229.2 215 56.3
PSO339G0293 Papaver somniferum HOM05D003431 ORTHO05D005152 3.3e-58 229.2 211 56.9
Cpa.g.sc2.27 Carica papaya HOM05D003431 ORTHO05D005152 4.3e-58 228.8 215 56.7
PSO801G0645 Papaver somniferum HOM05D003431 ORTHO05D005152 5.7e-58 228.4 211 56.9
Glyma.08G184300 Glycine max HOM05D003431 ORTHO05D005152 1.3e-57 227.3 211 56.9
Gohir.D01G167700 Gossypium hirsutum HOM05D003431 ORTHO05D005152 2.1e-57 226.5 215 55.8
RcHm_v2.0_Chr7g0224251 Rosa chinensis HOM05D003431 ORTHO05D005152 2.1e-57 226.5 215 57.7
Duzib248G1379 Durio zibethinus HOM05D003431 ORTHO05D005152 2.8e-57 226.1 215 56.3
Prupe.1G562900 Prunus persica HOM05D003431 ORTHO05D005152 2.8e-57 226.1 215 56.3
Glyma.15G048200 Glycine max HOM05D003431 ORTHO05D005152 3.7e-57 225.7 211 56.4
Gorai.002G208400 Gossypium raimondii HOM05D003431 ORTHO05D005152 4.8e-57 225.3 215 55.3
Lalb_Chr18g0060821 Lupinus albus HOM05D003431 ORTHO05D005152 4.8e-57 225.3 215 55.8
TWI23G0077 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 8.2e-57 224.6 208 58.2
HPP92_026977 Vanilla planifolia HOM05D003431 ORTHO05D005152 8.2e-57 224.6 212 57.1
A08p26810 Brassica napus HOM05D003431 ORTHO05D005152 1.4e-56 223.8 214 55.6
FAN08G2387 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.4e-56 223.8 215 56.7
PGR142G4046 Punica granatum HOM05D003431 ORTHO05D005152 1.4e-56 223.8 214 57.9
Thecc.02G041300 Theobroma cacao HOM05D003431 ORTHO05D005152 1.4e-56 223.8 215 55.8
BolC3t19610H Brassica oleracea HOM05D003431 ORTHO05D005152 2.4e-56 223.0 228 53.5
BcaC01g01674 Brassica carinata HOM05D003431 ORTHO05D005152 3.1e-56 222.6 212 56.1
FAN13G1098 Fragaria x ananassa HOM05D003431 ORTHO05D005152 3.1e-56 222.6 215 56.3
Psat1g220040 Pisum sativum HOM05D003431 ORTHO05D005152 3.1e-56 222.6 215 54.9
Aa31LG7G9280 Aethionema arabicum HOM05D003431 ORTHO05D005152 4.1e-56 222.2 212 57.1
HPP92_015419 Vanilla planifolia HOM05D003431 ORTHO05D005152 4.1e-56 222.2 212 57.1
ATR0174G027 Amborella trichopoda HOM05D003431 ORTHO05D005152 5.3e-56 221.9 211 55.9
C03p73140 Brassica napus HOM05D003431 ORTHO05D005152 6.9e-56 221.5 214 55.1
BcaB03g12039 Brassica carinata HOM05D003431 ORTHO05D005152 9.0e-56 221.1 212 55.7
BraA08t34627Z Brassica rapa HOM05D003431 ORTHO05D005152 1.2e-55 220.7 212 55.7
Thhalv10008680m.g Eutrema salsugineum HOM05D003431 ORTHO05D005152 2.0e-55 219.9 212 56.1
A09p39090 Brassica napus HOM05D003431 ORTHO05D005152 2.6e-55 219.5 212 56.1
BraA09t39409Z Brassica rapa HOM05D003431 ORTHO05D005152 2.6e-55 219.5 212 56.1
A07p12440 Brassica napus HOM05D003431 ORTHO05D005152 3.4e-55 219.2 212 56.1
BraA07t29025Z Brassica rapa HOM05D003431 ORTHO05D005152 3.4e-55 219.2 212 56.1
Gohir.A01G176900 Gossypium hirsutum HOM05D003431 ORTHO05D005152 3.4e-55 219.2 209 56.0
C05p25340 Brassica napus HOM05D003431 ORTHO05D005152 5.9e-55 218.4 212 55.2
AUR62020868 Chenopodium quinoa HOM05D003431 ORTHO05D005152 5.9e-55 218.4 215 54.0
Sp1g23030 Schrenkiella parvula HOM05D003431 ORTHO05D005152 7.6e-55 218.0 212 55.7
BcaC05g26690 Brassica carinata HOM05D003431 ORTHO05D005152 1.0e-54 217.6 212 55.2
Sed0006026 Sechium edule HOM05D003431 ORTHO05D005152 1.0e-54 217.6 211 55.5
BcaC05g26486 Brassica carinata HOM05D003431 ORTHO05D005152 1.3e-54 217.2 212 55.7
CARHR026300 Cardamine hirsuta HOM05D003431 ORTHO05D005152 1.3e-54 217.2 212 56.6
Hund24426 Selenicereus undatus HOM05D003431 ORTHO05D005152 1.3e-54 217.2 218 55.5
TPR.G39937 Trifolium pratense HOM05D003431 ORTHO05D005152 1.3e-54 217.2 215 55.8
BolC7t42349H Brassica oleracea HOM05D003431 ORTHO05D005152 1.7e-54 216.9 211 55.9
C07p18390 Brassica napus HOM05D003431 ORTHO05D005152 2.2e-54 216.5 212 55.2
EL10Ac3g07449 Beta vulgaris HOM05D003431 ORTHO05D005152 2.9e-54 216.1 212 54.7
BcaC06g35235 Brassica carinata HOM05D003431 ORTHO05D005152 3.8e-54 215.7 211 55.5
AUR62018551 Chenopodium quinoa HOM05D003431 ORTHO05D005152 3.8e-54 215.7 215 54.0
Sed0002836 Sechium edule HOM05D003431 ORTHO05D005152 3.8e-54 215.7 211 55.0
THA.LOC104807949 Tarenaya hassleriana HOM05D003431 ORTHO05D005152 3.8e-54 215.7 210 56.2
AT1G25260 Arabidopsis thaliana HOM05D003431 ORTHO05D005152 5.0e-54 215.3 214 54.2
CsaV3_2G018120 Cucumis sativus L. HOM05D003431 ORTHO05D005152 5.0e-54 215.3 211 55.5
Medtr2g007780 Medicago truncatula HOM05D003431 ORTHO05D005152 5.0e-54 215.3 216 55.6
Phvul.006G212200 Phaseolus vulgaris HOM05D003431 ORTHO05D005152 6.5e-54 214.9 211 55.0
BolC5t31269H Brassica oleracea HOM05D003431 ORTHO05D005152 8.5e-54 214.5 212 55.7
BcaB03g14023 Brassica carinata HOM05D003431 ORTHO05D005152 1.4e-53 213.8 220 53.2
AL1G40100 Arabidopsis lyrata HOM05D003431 ORTHO05D005152 9.3e-53 211.1 214 52.3
Lsat_1_v5_gn_9_116360 Lactuca sativa HOM05D003431 ORTHO05D005152 9.3e-53 211.1 195 58.5
Nitab4.5_0005539g0060 Nicotiana tabacum HOM05D003431 ORTHO05D005152 2.7e-52 209.5 190 57.4
Os12g0105200 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 8.7e-51 204.5 217 52.5
Os11g0105400 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 3.3e-50 202.6 214 52.3
Zm00001eb163260 Zea mays HOM05D003431 ORTHO05D005152 3.3e-50 202.6 220 52.3
Carub.0001s2531 Capsella rubella HOM05D003431 ORTHO05D005152 5.7e-50 201.8 212 50.9
Zm00001eb094240 Zea mays HOM05D003431 ORTHO05D005152 5.7e-50 201.8 213 52.6
ClCG02G000650 Citrullus lanatus HOM05D003431 ORTHO05D005152 1.3e-49 200.7 216 52.8
TAR636G0765 Trochodendron aralioides HOM05D003431 ORTHO05D005152 1.3e-49 200.7 181 60.2
FvH4_5g30060 Fragaria vesca HOM05D003431 ORTHO05D005152 2.9e-46 189.5 184 57.1
FAN04G1904 Fragaria x ananassa HOM05D003431 ORTHO05D005152 3.8e-46 189.1 196 54.1
CDE06G1320 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 6.5e-46 188.3 182 56.0
FAN18G1423 Fragaria x ananassa HOM05D003431 ORTHO05D005152 1.1e-45 187.6 182 57.1
Nn2g13208 Nelumbo nucifera HOM05D003431 ORTHO05D005152 1.1e-45 187.6 182 56.0
SHI16687 Sapria himalayana HOM05D003431 ORTHO05D005152 2.5e-45 186.4 189 54.5
arahy.Tifrunner.gnm1.ann1.N8P1ZJ Arachis hypogaea HOM05D003431 ORTHO05D005152 4.2e-45 185.7 184 54.9
Oeu026055.1 Olea europaea HOM05D003431 ORTHO05D005152 2.7e-44 183.0 121 72.7
SMO367G0584 Selaginella moellendorffii HOM05D003431 ORTHO05D005152 3.6e-44 182.6 209 47.4
Pp3c11_25500 Physcomitrium patens HOM05D003431 ORTHO05D005152 7.9e-44 181.4 209 47.4
Pp3s128_30 Physcomitrium patens HOM05D003431 ORTHO05D005152 7.9e-44 181.4 209 47.4
CAN.G1352.24 Capsicum annuum HOM05D003431 ORTHO05D005152 1.8e-43 180.3 258 42.2
AagrBONN_evm.TU.Sc2ySwM_369.396 Anthoceros agrestis HOM05D003431 ORTHO05D005152 2.6e-42 176.4 210 43.3
Mapoly0015s0017 Marchantia polymorpha HOM05D003431 ORTHO05D005152 4.8e-41 172.2 210 45.2
Hma1.2p1_0217F.1_g091920 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 3.2e-37 159.5 151 55.0
Ah.04g149460 Amaranthus hybridus HOM05D003431 ORTHO05D005152 1.7e-33 147.1 210 44.8
Dinv19350 Davidia involucrata HOM05D003431 ORTHO05D005152 8.2e-33 144.8 105 69.5
CBR_g26270 Chara braunii HOM05D003431 ORTHO05D005152 1.8e-32 143.7 214 42.5
MCO04G167 Micromonas commoda HOM05D003431 ORTHO05D005152 1.2e-28 131.0 203 37.9
Cre06.g261700 Chlamydomonas reinhardtii HOM05D003431 ORTHO05D005152 5.5e-21 105.5 201 35.3
C05p02190 Brassica napus HOM05D003431 ORTHO05D014368 2.1e-20 103.6 103 53.4
SEGI_29948 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 2.6e-18 96.7 68 63.2
ATR0085G001 Amborella trichopoda HOM05D003431 ORTHO05D014368 4.4e-18 95.9 68 64.7
BolC5t29949H Brassica oleracea HOM05D003431 ORTHO05D005152 1.3e-17 94.4 98 55.1
PRCOL_00006634 Prasinoderma coloniale HOM05D003431 ORTHO05D005152 2.2e-17 93.6 194 30.9
BolC5t28997H Brassica oleracea HOM05D003431 ORTHO05D014368 2.8e-17 93.2 97 50.5
BcaC06g34618 Brassica carinata HOM05D003431 ORTHO05D027670 2.4e-16 90.1 99 43.4
A02p15310 Brassica napus HOM05D003431 ORTHO05D027670 3.1e-16 89.7 120 40.8
A04p21520 Brassica napus HOM05D003431 ORTHO05D027670 3.1e-16 89.7 120 40.8
C07p26410 Brassica napus HOM05D003431 ORTHO05D027670 2.0e-15 87.0 120 40.0
Hma1.2p1_1038F.1_g250760 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 2.7e-15 86.7 55 78.2
Cfa023894 Carpinus fangiana HOM05D003431 ORTHO05D005152 4.5e-15 85.9 217 27.6
COL.COLO4_17896 Corchorus olitorius HOM05D003431 ORTHO05D005152 6.5e-14 82.0 50 76.0
MELO3C023261.2 Cucumis melo HOM05D003431 ORTHO05D005152 1.1e-13 81.3 105 46.7
SEGI_34754 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 1.1e-13 81.3 55 70.9
Zm00001eb078820 Zea mays HOM05D003431 ORTHO05D005152 1.5e-13 80.9 62 54.8
Dinv19351 Davidia involucrata HOM05D003431 ORTHO05D005152 5.5e-13 79.0 50 70.0
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 1.2e-12 77.8 44 72.7
MELO3C034572.2 Cucumis melo HOM05D003431 ORTHO05D005152 5.2e-11 72.4 56 64.3
BcaC05g27507 Brassica carinata HOM05D003431 ORTHO05D014368 3.4e-10 69.7 60 55.0
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 4.4e-10 69.3 82 48.8
BcaB08g35512 Brassica carinata HOM05D003431 ORTHO05D014368 2.8e-09 66.6 62 51.6
BolC6t38529H Brassica oleracea HOM05D003431 ORTHO05D014368 8.3e-09 65.1 64 48.4
A05p13450 Brassica napus HOM05D003431 ORTHO05D100885 1.4e-08 64.3 107 37.4
A05p19340 Brassica napus HOM05D003431 ORTHO05D014368 3.1e-08 63.2 57 54.4
CsaV3_1G025580 Cucumis sativus L. HOM05D003431 ORTHO05D005152 9.2e-08 61.6 51 56.9
BcaC07g37686 Brassica carinata HOM05D003431 ORTHO05D032197 5.9e-07 58.9 81 38.3
HanXRQChr07g0193031 Helianthus annuus HOM05D003431 ORTHO05D004801 5.9e-07 58.9 43 60.5
BcaC05g24499 Brassica carinata HOM05D003431 ORTHO05D014368 2.9e-06 56.6 99 39.4
Hund19013 Selenicereus undatus HOM05D003431 ORTHO05D380568 3.8e-06 56.2 138 31.9
SEGI_37042 Sequoiadendron giganteum HOM05D003431 ORTHO05D005152 5.0e-06 55.8 44 56.8
Zm00001eb026620 Zea mays HOM05D003431 ORTHO05D005152 6.6e-06 55.5 41 51.2
CARHR057180 Cardamine hirsuta HOM05D003431 ORTHO05D014368 8.6e-06 55.1 76 40.8


User provided reference genes

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