Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 0.0e+00 1076.2 587 100.0
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.2e-253 879.8 582 83.7
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 2.5e-232 808.9 593 75.5
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 7.7e-213 744.2 585 72.1
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 6.6e-188 661.4 581 62.8
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 1.5e-179 633.6 580 63.4
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 4.6e-157 558.9 576 54.0
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 1.1e-153 547.7 586 53.1
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 2.9e-151 539.7 585 51.5
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.2e-150 536.2 578 53.3
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.2e-149 534.3 585 55.9
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 7.8e-149 531.6 586 51.2
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.3e-146 524.2 572 53.3
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 3.2e-142 509.6 583 50.9
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.3e-140 503.4 587 53.2
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 3.4e-136 489.6 555 49.7
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 7.6e-136 488.4 570 51.2
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 2.9e-135 486.5 589 49.1
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 1.1e-134 484.6 578 49.5
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 9.3e-134 481.5 580 48.3
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 1.3e-132 477.6 457 59.7
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 1.5e-131 474.2 580 49.8
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.5e-131 473.4 575 50.6
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 4.3e-131 472.6 583 51.1
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.8e-130 469.2 582 48.8
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 5.3e-129 465.7 584 50.3
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 6.9e-129 465.3 566 47.9
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.5e-128 464.2 579 47.0
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 2.6e-128 463.4 584 49.8
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 1.7e-127 460.7 578 48.6
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 2.9e-127 459.9 576 47.4
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 6.5e-127 458.8 557 46.7
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 3.2e-126 456.4 584 49.3
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 1.6e-125 454.1 571 46.4
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 4.6e-125 452.6 560 45.7
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.0e-124 451.4 585 44.3
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 1.0e-124 451.4 538 47.0
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 3.9e-124 449.5 592 46.3
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 1.1e-123 448.0 584 45.2
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 4.3e-123 446.0 587 45.3
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 4.3e-123 446.0 547 43.7
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.1e-121 441.4 596 45.0
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.1e-121 441.4 596 45.0
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 3.1e-121 439.9 517 50.9
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.1e-121 439.9 563 44.4
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 5.3e-121 439.1 587 46.8
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 9.0e-121 438.3 571 45.9
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.0e-120 437.2 595 48.2
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 3.4e-120 436.4 588 44.0
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 1.7e-119 434.1 576 44.6
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.1e-118 431.4 577 46.4
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 1.4e-118 431.0 596 42.4
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.4e-118 431.0 576 48.6
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.4e-118 431.0 586 43.9
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 9.3e-118 428.3 550 43.8
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 9.3e-118 428.3 585 43.8
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 2.1e-117 427.2 584 44.3
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 6.1e-117 425.6 589 45.0
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 6.1e-117 425.6 592 45.1
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 1.0e-116 424.9 559 44.5
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 1.0e-116 424.9 546 44.1
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.3e-116 423.7 554 43.5
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.3e-116 423.7 478 52.5
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 3.0e-116 423.3 589 45.0
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 6.7e-116 422.2 560 44.5
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 1.1e-115 421.4 594 44.1
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 2.5e-115 420.2 595 43.2
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 9.7e-115 418.3 582 44.2
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.6e-114 417.5 594 41.9
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.6e-114 417.5 589 44.3
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 4.8e-114 416.0 647 40.8
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.1e-113 414.8 578 42.7
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.1e-113 414.8 588 43.2
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 1.4e-113 414.5 591 42.5
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 1.4e-113 414.5 545 43.7
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 1.8e-113 414.1 588 43.2
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 2.4e-113 413.7 593 41.5
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 4.1e-113 412.9 586 45.9
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 2.0e-112 410.6 593 41.3
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 5.9e-112 409.1 556 42.6
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 7.7e-112 408.7 582 44.0
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.5e-111 405.6 563 42.8
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 3.2e-110 403.3 563 42.5
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.2e-110 402.9 588 44.7
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 6.1e-109 399.1 570 46.1
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 7.9e-109 398.7 544 44.9
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.3e-108 397.1 580 41.6
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 3.0e-108 396.7 554 42.6
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 1.1e-107 394.8 604 40.1
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 1.1e-107 394.8 590 42.5
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.3e-106 391.3 583 41.9
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 1.3e-106 391.3 541 40.7
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 2.0e-104 384.0 539 40.6
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 2.0e-104 384.0 545 40.2
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.5e-104 382.9 556 42.8
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 2.2e-103 380.6 457 48.8
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 5.5e-102 375.9 536 39.6
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 2.1e-101 374.0 574 39.0
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 2.1e-101 374.0 538 42.8
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 3.6e-101 373.2 584 41.8
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 4.7e-101 372.9 544 40.1
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 3.0e-100 370.2 471 49.3
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 2.2e-98 364.0 586 40.4
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 1.4e-97 361.3 580 38.1
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 2.4e-97 360.5 580 38.3
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 2.0e-96 357.5 538 40.0
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 6.5e-95 352.4 580 37.6
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 6.5e-95 352.4 583 39.5
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 3.6e-93 346.7 582 37.6
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 6.1e-93 345.9 580 37.1
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 8.0e-93 345.5 580 36.9
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 1.0e-92 345.1 544 39.3
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 1.4e-92 344.7 537 36.9
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 1.8e-92 344.4 567 40.2
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.8e-92 344.4 367 52.9
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 4.4e-91 339.7 379 50.9
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 9.1e-89 332.0 596 36.4
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.2e-87 327.4 400 44.8
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 5.5e-86 322.8 414 44.7
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 5.5e-86 322.8 478 42.9
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 1.4e-84 318.2 462 41.6
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 4.0e-84 316.6 484 43.4
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 5.9e-80 302.8 538 36.4
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 1.6e-77 294.7 272 58.1
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 7.5e-75 285.8 581 37.3
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 8.6e-71 272.3 578 33.9
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 4.7e-69 266.5 271 52.4
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 2.8e-61 240.7 391 35.8
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.1e-57 228.8 442 35.7
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.6e-56 223.4 260 47.3
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 7.1e-49 199.5 394 35.3
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.0e-47 195.7 334 37.7
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.7e-47 194.9 344 35.2
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 3.4e-43 180.6 245 46.9
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.2e-42 177.9 256 39.1
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 9.9e-35 152.5 168 50.0
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.9e-34 151.0 252 39.3
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.4e-33 147.9 162 50.0
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 3.2e-33 147.5 481 25.2
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.4e-33 146.7 162 50.0
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 9.3e-33 146.0 537 25.5
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 7.8e-32 142.9 538 25.1
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 1.1e-30 139.0 152 46.7
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.9e-30 138.3 144 50.0
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 1.8e-28 131.7 173 40.5
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.2e-27 129.0 216 41.2
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 1.5e-27 128.6 516 23.1
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 4.9e-26 123.6 541 23.5
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 9.3e-25 119.4 160 41.2
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 6.0e-24 116.7 547 25.0
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 7.9e-24 116.3 143 43.4
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 2.3e-23 114.8 170 39.4
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.9e-23 114.0 105 59.0
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 8.7e-23 112.8 164 37.8
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.5e-22 111.3 109 50.5
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.3e-21 109.0 219 37.0
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 5.3e-20 103.6 134 44.0
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 1.2e-19 102.4 162 37.0
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.5e-19 102.1 123 48.0
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.5e-19 102.1 99 50.5
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.8e-19 100.1 179 35.8
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 7.1e-17 93.2 147 39.5
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.6e-14 83.6 80 51.2
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 7.4e-14 83.2 450 21.6
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.6e-13 82.0 134 39.6
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 3.1e-12 77.8 78 55.1
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 4.0e-12 77.4 241 26.6
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.6e-11 74.7 111 34.2
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.6e-11 74.7 111 44.1
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 2.2e-10 71.6 78 46.2
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 2.2e-10 71.6 64 57.8
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.8e-10 70.9 69 50.7
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 4.9e-10 70.5 450 22.0
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 1.4e-09 68.9 77 44.2
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 7.1e-09 66.6 85 45.9
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 9.3e-09 66.2 117 31.6
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.8e-07 62.0 55 52.7
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 6.7e-07 60.1 64 51.6
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.5e-06 58.9 65 52.3
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.5e-06 58.9 65 52.3


User provided reference genes

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