Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05473 Striga asiatica HOM05D001120 ORTHO05D002943 3.0e-125 451.8 224 100.0
SGA_v2.0_scaffold14G06826 Striga asiatica HOM05D001120 ORTHO05D002943 2.5e-39 166.4 166 57.2
SGA_v2.0_scaffold4G02419 Striga asiatica HOM05D001120 ORTHO05D002943 3.1e-37 159.5 127 68.5
SGA_v2.0_scaffold106G30701 Striga asiatica HOM05D001120 ORTHO05D002943 4.5e-36 155.6 155 58.7
SGA_v2.0_scaffold43G16464 Striga asiatica HOM05D001120 ORTHO05D002943 2.5e-26 123.2 153 47.7
SGA_v2.0_scaffold51G18691 Striga asiatica HOM05D001120 ORTHO05D002943 3.9e-24 115.9 131 48.9
SGA_v2.0_scaffold43G16465 Striga asiatica HOM05D001120 ORTHO05D002943 2.2e-19 100.1 92 56.5
Medtr3g006860 Medicago truncatula HOM05D001120 ORTHO05D002943 3.8e-11 72.8 79 46.8
CiPaw.03G098500 Carya illinoinensis HOM05D001120 ORTHO05D002943 1.1e-10 71.2 79 46.8
Medtr6g463380 Medicago truncatula HOM05D001120 ORTHO05D002943 1.4e-10 70.9 79 46.8
Lsat_1_v5_gn_8_7961 Lactuca sativa HOM05D001120 ORTHO05D002943 1.9e-10 70.5 78 48.7
MELO3C006846.2 Cucumis melo HOM05D001120 ORTHO05D002943 2.5e-10 70.1 79 43.0
Migut.F01165 Erythranthe guttata HOM05D001120 ORTHO05D002943 2.5e-10 70.1 79 45.6
Hma1.2p1_0033F.1_g020890 Hydrangea macrophylla HOM05D001120 ORTHO05D002943 2.5e-10 70.1 114 38.6
TAR375G0839 Trochodendron aralioides HOM05D001120 ORTHO05D002943 2.5e-10 70.1 133 38.3
Nitab4.5_0000072g0150 Nicotiana tabacum HOM05D001120 ORTHO05D002943 3.2e-10 69.7 132 37.1
Nitab4.5_0006353g0020 Nicotiana tabacum HOM05D001120 ORTHO05D002943 3.2e-10 69.7 132 37.1
Ah.13g067550 Amaranthus hybridus HOM05D001120 ORTHO05D002943 4.2e-10 69.3 79 44.3
CAN.G1409.5 Capsicum annuum HOM05D001120 ORTHO05D002943 4.2e-10 69.3 132 37.1
Medtr6g061650 Medicago truncatula HOM05D001120 ORTHO05D002943 4.2e-10 69.3 75 46.7
Solyc03g007000.4 Solanum lycopersicum HOM05D001120 ORTHO05D002943 4.2e-10 69.3 132 37.1
Sopen03g003000 Solanum pennellii HOM05D001120 ORTHO05D002943 4.2e-10 69.3 132 37.1
HanXRQChr05g0141341 Helianthus annuus HOM05D001120 ORTHO05D002943 5.5e-10 68.9 78 46.2
PGSC0003DMG400031017 Solanum tuberosum HOM05D001120 ORTHO05D002943 5.5e-10 68.9 79 45.6
THA.LOC104806528 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 5.5e-10 68.9 132 36.4
Lsat_1_v5_gn_8_157341 Lactuca sativa HOM05D001120 ORTHO05D002943 7.2e-10 68.6 78 47.4
Cc02_g03730 Coffea canephora HOM05D001120 ORTHO05D002943 9.4e-10 68.2 79 45.6
GSVIVG01018475001 Vitis vinifera HOM05D001120 ORTHO05D002943 9.4e-10 68.2 132 36.4
HanXRQChr03g0061581 Helianthus annuus HOM05D001120 ORTHO05D002943 1.2e-09 67.8 78 44.9
Ca_19532_v3 Cicer arietinum L. HOM05D001120 ORTHO05D002943 1.6e-09 67.4 145 35.2
FAN06G0604 Fragaria x ananassa HOM05D001120 ORTHO05D002943 1.6e-09 67.4 121 39.7
Peaxi162Scf00192g00835 Petunia axillaris HOM05D001120 ORTHO05D002943 1.6e-09 67.4 132 36.4
TWI23G0697 Tripterygium wilfordii HOM05D001120 ORTHO05D002943 1.6e-09 67.4 79 43.0
BcaC04g20640 Brassica carinata HOM05D001120 ORTHO05D002943 2.1e-09 67.0 133 37.6
A10p09590 Brassica napus HOM05D001120 ORTHO05D002943 2.1e-09 67.0 133 37.6
C09p41150 Brassica napus HOM05D001120 ORTHO05D002943 2.1e-09 67.0 133 37.6
BolC9t56993H Brassica oleracea HOM05D001120 ORTHO05D002943 2.1e-09 67.0 133 37.6
Ciclev10004987m.g Citrus clementina HOM05D001120 ORTHO05D002943 2.1e-09 67.0 79 43.0
COL.COLO4_14203 Corchorus olitorius HOM05D001120 ORTHO05D004313 2.1e-09 67.0 79 45.6
Rhsim03G0173300 Rhododendron simsii HOM05D001120 ORTHO05D002943 2.1e-09 67.0 132 35.6
Atru.chr1.607 Acer truncatum HOM05D001120 ORTHO05D002943 2.7e-09 66.6 81 42.0
Actinidia13529 Actinidia chinensis HOM05D001120 ORTHO05D002943 2.7e-09 66.6 132 36.4
BcaB08g35521 Brassica carinata HOM05D001120 ORTHO05D002943 2.7e-09 66.6 133 37.6
AUR62021289 Chenopodium quinoa HOM05D001120 ORTHO05D002943 2.7e-09 66.6 79 44.3
Duzib084G0753 Durio zibethinus HOM05D001120 ORTHO05D002943 2.7e-09 66.6 79 43.0
Gohir.D07G044000 Gossypium hirsutum HOM05D001120 ORTHO05D002943 2.7e-09 66.6 79 43.0
PSO782G3773 Papaver somniferum HOM05D001120 ORTHO05D002943 2.7e-09 66.6 79 41.8
CSS0025134 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 3.6e-09 66.2 78 46.2
Phvul.004G125600 Phaseolus vulgaris HOM05D001120 ORTHO05D002943 3.6e-09 66.2 132 34.8
QL12p039195 Quercus lobata HOM05D001120 ORTHO05D002943 3.6e-09 66.2 79 43.0
MSTRG.27147 Avicennia marina HOM05D001120 ORTHO05D002943 4.6e-09 65.9 79 43.0
CARHR264600 Cardamine hirsuta HOM05D001120 ORTHO05D002943 4.6e-09 65.9 80 46.2
Gorai.001G047100 Gossypium raimondii HOM05D001120 ORTHO05D002943 4.6e-09 65.9 79 43.0
PSO478G4258 Papaver somniferum HOM05D001120 ORTHO05D002943 4.6e-09 65.9 79 43.0
Aa31LG3G8190 Aethionema arabicum HOM05D001120 ORTHO05D002943 6.1e-09 65.5 132 36.4
Aqoxy3G00121 Aquilegia oxysepala HOM05D001120 ORTHO05D002943 6.1e-09 65.5 95 41.1
arahy.Tifrunner.gnm1.ann1.E4F5HJ Arachis hypogaea HOM05D001120 ORTHO05D002943 6.1e-09 65.5 79 43.0
Thhalv10013554m.g Eutrema salsugineum HOM05D001120 ORTHO05D002943 6.1e-09 65.5 133 36.8
Glyma.06G289600 Glycine max HOM05D001120 ORTHO05D002943 6.1e-09 65.5 79 41.8
Gohir.A09G178700 Gossypium hirsutum HOM05D001120 ORTHO05D002943 6.1e-09 65.5 79 41.8
Gohir.D09G174300 Gossypium hirsutum HOM05D001120 ORTHO05D002943 6.1e-09 65.5 79 41.8
Gorai.006G196300 Gossypium raimondii HOM05D001120 ORTHO05D002943 6.1e-09 65.5 79 41.8
Mapoly0030s0021 Marchantia polymorpha HOM05D001120 ORTHO05D002943 6.1e-09 65.5 149 32.2
PGR042G0858 Punica granatum HOM05D001120 ORTHO05D002943 6.1e-09 65.5 80 45.0
Sc19g0001810 Simmondsia chinensis HOM05D001120 ORTHO05D002943 6.1e-09 65.5 79 40.5
VMungo1127G0245 Vigna mungo HOM05D001120 ORTHO05D002943 6.1e-09 65.5 79 41.8
AT5G51740 Arabidopsis thaliana HOM05D001120 ORTHO05D002943 7.9e-09 65.1 125 39.2
CDE11G0287 Ceratophyllum demersum HOM05D001120 ORTHO05D002943 7.9e-09 65.1 79 43.0
Rhsim05G0178800 Rhododendron simsii HOM05D001120 ORTHO05D002943 7.9e-09 65.1 147 36.1
SGA_v2.0_scaffold10G05437 Striga asiatica HOM05D001120 ORTHO05D002943 7.9e-09 65.1 75 44.0
unitig_52.g17752 Utricularia gibba HOM05D001120 ORTHO05D002943 7.9e-09 65.1 79 43.0
Ca_19538_v3 Cicer arietinum L. HOM05D001120 ORTHO05D002943 1.0e-08 64.7 71 46.5
MBI12_g37712_MAGBIO Magnolia biondii HOM05D001120 ORTHO05D002943 1.0e-08 64.7 133 35.3
Manes.06G139500 Manihot esculenta HOM05D001120 ORTHO05D002943 1.0e-08 64.7 131 36.6
Hund11789 Selenicereus undatus HOM05D001120 ORTHO05D002943 1.0e-08 64.7 81 43.2
vmacro06755 Vaccinium macrocarpon HOM05D001120 ORTHO05D002943 1.0e-08 64.7 72 45.8
Atru.chr1.603 Acer truncatum HOM05D001120 ORTHO05D002943 1.4e-08 64.3 111 35.1
CSS0023912 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 1.4e-08 64.3 79 40.5
Glyma.09G151800 Glycine max HOM05D001120 ORTHO05D002943 1.4e-08 64.3 133 35.3
Hma1.2p1_0488F.1_g163780 Hydrangea macrophylla HOM05D001120 ORTHO05D002943 1.4e-08 64.3 132 34.8
Lj8C35G5 Lonicera japonica HOM05D001120 ORTHO05D002943 1.4e-08 64.3 79 40.5
Lj2g0010051 Lotus japonicus HOM05D001120 ORTHO05D002943 1.4e-08 64.3 80 41.2
Hund04661 Selenicereus undatus HOM05D001120 ORTHO05D002943 1.4e-08 64.3 79 43.0
THA.LOC104811503 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 1.4e-08 64.3 80 42.5
Lj6g0021937 Lotus japonicus HOM05D001120 ORTHO05D002943 1.8e-08 63.9 132 34.1
Thecc.03G163900 Theobroma cacao HOM05D001120 ORTHO05D002943 1.8e-08 63.9 79 43.0
Lalb_Chr25g0289251 Lupinus albus HOM05D001120 ORTHO05D002943 2.3e-08 63.5 138 34.1
Rhsim07G0025300 Rhododendron simsii HOM05D001120 ORTHO05D002943 2.3e-08 63.5 169 32.0
VMungo0464G0810 Vigna mungo HOM05D001120 ORTHO05D002943 2.3e-08 63.5 132 35.6
EL10Ac3g05764 Beta vulgaris HOM05D001120 ORTHO05D002943 3.0e-08 63.2 80 40.0
Carub.0008s1176 Capsella rubella HOM05D001120 ORTHO05D002943 3.0e-08 63.2 127 37.8
RcHm_v2.0_Chr1g0375401 Rosa chinensis HOM05D001120 ORTHO05D002943 3.0e-08 63.2 81 42.0
Sed0024680 Sechium edule HOM05D001120 ORTHO05D002943 3.0e-08 63.2 79 39.2
Atru.chr1.606 Acer truncatum HOM05D001120 ORTHO05D002943 3.9e-08 62.8 71 43.7
ATR0757G141 Amborella trichopoda HOM05D001120 ORTHO05D002943 3.9e-08 62.8 79 40.5
Aqoxy7G00546 Aquilegia oxysepala HOM05D001120 ORTHO05D002943 3.9e-08 62.8 79 39.2
AUR62016080 Chenopodium quinoa HOM05D001120 ORTHO05D002943 3.9e-08 62.8 79 43.0
FAN06G3100 Fragaria x ananassa HOM05D001120 ORTHO05D002943 3.9e-08 62.8 133 36.1
Prupe.2G284300 Prunus persica HOM05D001120 ORTHO05D002943 3.9e-08 62.8 132 34.1
Rhsim07G0025100 Rhododendron simsii HOM05D001120 ORTHO05D002943 3.9e-08 62.8 142 36.6
AL8G26010 Arabidopsis lyrata HOM05D001120 ORTHO05D002943 5.1e-08 62.4 125 37.6
arahy.Tifrunner.gnm1.ann1.0ZDL97 Arachis hypogaea HOM05D001120 ORTHO05D002943 5.1e-08 62.4 134 35.8
arahy.Tifrunner.gnm1.ann1.16TVZ1 Arachis hypogaea HOM05D001120 ORTHO05D002943 5.1e-08 62.4 134 35.8
CANSAT21G2509 Cannabis sativa HOM05D001120 ORTHO05D002943 5.1e-08 62.4 132 34.1
ClCG05G007580 Citrullus lanatus HOM05D001120 ORTHO05D002943 5.1e-08 62.4 79 39.2
PSO478G1970 Papaver somniferum HOM05D001120 ORTHO05D002943 5.1e-08 62.4 133 33.8
Potri.012G131100 Populus trichocarpa HOM05D001120 ORTHO05D002943 5.1e-08 62.4 72 45.8
Sabra12G0098600 Salix brachista HOM05D001120 ORTHO05D004313 5.1e-08 62.4 72 45.8
Cfa008242 Carpinus fangiana HOM05D001120 ORTHO05D004313 6.7e-08 62.0 202 31.7
QL08p051844 Quercus lobata HOM05D001120 ORTHO05D002943 6.7e-08 62.0 78 38.5
Ca_19537_v3 Cicer arietinum L. HOM05D001120 ORTHO05D002943 8.8e-08 61.6 71 43.7
Eucgr.A02865 Eucalyptus grandis HOM05D001120 ORTHO05D002943 8.8e-08 61.6 79 40.5
FAN01G0606 Fragaria x ananassa HOM05D001120 ORTHO05D002943 8.8e-08 61.6 82 41.5
FAN03G1927 Fragaria x ananassa HOM05D001120 ORTHO05D002943 8.8e-08 61.6 133 35.3
Aqoxy5G03582 Aquilegia oxysepala HOM05D001120 ORTHO05D002943 1.1e-07 61.2 76 47.4
arahy.Tifrunner.gnm1.ann1.X1WI1D Arachis hypogaea HOM05D001120 ORTHO05D002943 1.1e-07 61.2 79 40.5
ECA233G0610 Erigeron canadensis HOM05D001120 ORTHO05D002943 1.1e-07 61.2 89 42.7
FvH4_7g28432 Fragaria vesca HOM05D001120 ORTHO05D002943 1.1e-07 61.2 82 41.5
FAN06G2540 Fragaria x ananassa HOM05D001120 ORTHO05D002943 1.1e-07 61.2 82 41.5
FAN10G1418 Fragaria x ananassa HOM05D001120 ORTHO05D002943 1.1e-07 61.2 82 41.5
CANSAT21G0609 Cannabis sativa HOM05D001120 ORTHO05D002943 1.5e-07 60.8 132 34.1
PSO782G1143 Papaver somniferum HOM05D001120 ORTHO05D002943 1.5e-07 60.8 133 33.8
HPP92_007982 Vanilla planifolia HOM05D001120 ORTHO05D002943 1.5e-07 60.8 80 41.2
Actinidia31796 Actinidia chinensis HOM05D000032 ORTHO05D004313 2.0e-07 60.5 111 35.1
Cc02_g27570 Coffea canephora HOM05D001120 ORTHO05D002943 2.0e-07 60.5 78 41.0
arahy.Tifrunner.gnm1.ann1.35XLXM Arachis hypogaea HOM05D001120 ORTHO05D002943 2.6e-07 60.1 79 39.2
COL.COLO4_12579 Corchorus olitorius HOM05D001120 ORTHO05D002943 2.6e-07 60.1 77 39.0
COL.COLO4_33196 Corchorus olitorius HOM05D001120 ORTHO05D002943 2.6e-07 60.1 78 39.7
DCAR_018133 Daucus carota HOM05D001120 ORTHO05D002943 2.6e-07 60.1 73 42.5
ECA233G6122 Erigeron canadensis HOM05D001120 ORTHO05D002943 2.6e-07 60.1 75 44.0
Os02g0735100 Oryza sativa ssp. japonica HOM05D001120 ORTHO05D002943 2.6e-07 60.1 80 40.0
TPR.G15608 Trifolium pratense HOM05D001120 ORTHO05D002943 2.6e-07 60.1 70 42.9
Medtr1g012015 Medicago truncatula HOM05D001120 ORTHO05D002943 3.3e-07 59.7 85 37.6
TPR.G31349 Trifolium pratense HOM05D001120 ORTHO05D002943 3.3e-07 59.7 73 37.0
Aqoxy5G03663 Aquilegia oxysepala HOM05D001120 ORTHO05D002943 4.4e-07 59.3 94 42.6
Dinv28521 Davidia involucrata HOM05D001120 ORTHO05D002943 4.4e-07 59.3 134 34.3
FAN03G1503 Fragaria x ananassa HOM05D001120 ORTHO05D002943 4.4e-07 59.3 133 35.3
Pp3c23_3440 Physcomitrium patens HOM05D001120 ORTHO05D002943 4.4e-07 59.3 105 36.2
vmacro09881 Vaccinium macrocarpon HOM05D001120 ORTHO05D002943 4.4e-07 59.3 81 39.5
MD01G1187900 Malus domestica HOM05D001120 ORTHO05D002943 5.7e-07 58.9 134 32.8
Rhsim07G0026200 Rhododendron simsii HOM05D001120 ORTHO05D002943 5.7e-07 58.9 145 33.1
Rhsim09G0194100 Rhododendron simsii HOM05D001120 ORTHO05D002943 5.7e-07 58.9 134 35.1
COL.COLO4_05154 Corchorus olitorius HOM05D001120 ORTHO05D002943 9.7e-07 58.2 91 34.1
FAN06G0193 Fragaria x ananassa HOM05D001120 ORTHO05D002943 9.7e-07 58.2 75 44.0
CSS0048489 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 1.3e-06 57.8 125 36.8
Cpa.g.sc3.252 Carica papaya HOM05D001120 ORTHO05D002943 1.3e-06 57.8 79 38.0
EL10Ac3g05114 Beta vulgaris HOM05D001120 ORTHO05D002943 1.7e-06 57.4 110 37.3
EL10Ac3g05113 Beta vulgaris HOM05D001120 ORTHO05D002943 2.2e-06 57.0 125 35.2
Rhsim07G0024900 Rhododendron simsii HOM05D001120 ORTHO05D002943 2.2e-06 57.0 151 30.5
EL10Ac3g05115 Beta vulgaris HOM05D001120 ORTHO05D002943 2.8e-06 56.6 73 45.2
EL10Ac3g05116 Beta vulgaris HOM05D001120 ORTHO05D002943 2.8e-06 56.6 73 45.2
EL10Ac3g05117 Beta vulgaris HOM05D001120 ORTHO05D002943 2.8e-06 56.6 73 45.2
Medtr7g025575 Medicago truncatula HOM05D001120 ORTHO05D002943 2.8e-06 56.6 86 34.9
Haze_13809 Corylus avellana HOM05D001120 ORTHO05D002943 4.8e-06 55.8 193 31.6
arahy.Tifrunner.gnm1.ann1.W17802 Arachis hypogaea HOM05D001120 ORTHO05D002943 8.2e-06 55.1 79 36.7
COL.COLO4_33195 Corchorus olitorius HOM05D001120 ORTHO05D002943 8.2e-06 55.1 128 29.7
SalBow2G0050 Salvia bowleyana HOM05D001120 ORTHO05D002943 8.2e-06 55.1 69 44.9


User provided reference genes

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