Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 5.3e-119 431.0 215 100.0
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 4.6e-107 391.3 212 91.5
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 2.4e-103 379.0 215 87.0
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 1.7e-93 346.3 215 76.7
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 2.0e-89 332.8 215 75.3
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 2.0e-89 332.8 218 76.1
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 3.7e-88 328.6 211 75.8
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 3.7e-88 328.6 218 75.7
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.4e-87 326.6 209 76.1
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 4.1e-87 325.1 211 74.9
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 1.2e-86 323.6 217 74.7
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 1.6e-86 323.2 214 76.2
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 2.0e-86 322.8 211 74.4
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 4.5e-86 321.6 214 75.2
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 5.9e-86 321.2 212 75.9
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 7.7e-86 320.9 217 74.7
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 1.7e-85 319.7 212 73.6
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 3.8e-85 318.5 215 74.0
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 6.5e-85 317.8 215 73.0
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 1.2e-83 313.5 211 73.0
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 2.1e-83 312.8 246 66.3
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 1.0e-82 310.5 202 76.7
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.4e-82 310.1 211 72.5
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 1.5e-81 306.6 204 72.1
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 2.6e-81 305.8 212 69.8
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 2.6e-81 305.8 217 70.5
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 2.6e-81 305.8 217 70.5
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 4.4e-81 305.1 207 72.0
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 5.7e-81 304.7 208 71.2
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 9.7e-81 303.9 200 78.0
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 1.7e-80 303.1 205 71.2
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.7e-80 303.1 218 69.3
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 2.2e-80 302.8 217 70.0
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 2.8e-80 302.4 226 68.1
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 4.8e-80 301.6 217 71.9
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 8.2e-80 300.8 228 67.5
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 8.2e-80 300.8 215 71.2
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.4e-79 300.1 218 69.7
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 1.8e-79 299.7 217 69.6
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.8e-79 299.7 216 69.0
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 2.4e-79 299.3 217 69.1
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 3.1e-79 298.9 217 69.1
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 3.1e-79 298.9 219 68.9
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 4.1e-79 298.5 215 68.8
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 7.0e-79 297.7 217 69.1
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.2e-78 297.0 202 73.8
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 3.5e-78 295.4 222 67.6
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 4.5e-78 295.0 228 66.2
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 4.5e-78 295.0 205 68.3
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.2e-77 292.7 211 67.8
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 2.9e-77 292.4 206 68.9
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 6.5e-77 291.2 216 68.5
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 6.5e-77 291.2 211 68.7
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 6.5e-77 291.2 206 68.9
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.1e-76 290.4 223 67.7
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 1.5e-76 290.0 212 67.0
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 1.9e-76 289.7 212 65.6
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 3.2e-76 288.9 216 68.1
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 9.4e-76 287.3 213 66.7
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 9.4e-76 287.3 212 65.1
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.6e-75 286.6 188 71.3
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 1.6e-75 286.6 206 68.9
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 1.6e-75 286.6 206 68.9
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 1.6e-75 286.6 206 68.4
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.7e-75 285.8 184 73.4
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 8.0e-75 284.3 211 66.8
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 8.0e-75 284.3 213 68.5
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.4e-74 283.5 189 71.4
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 3.0e-74 282.3 188 71.3
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 4.0e-74 282.0 212 65.1
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 5.2e-74 281.6 212 66.5
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 6.8e-74 281.2 219 68.0
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 1.2e-73 280.4 209 64.1
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 2.0e-73 279.6 217 67.7
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.0e-73 279.6 202 65.8
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 2.6e-73 279.3 207 67.6
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 4.4e-73 278.5 215 65.1
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 4.4e-73 278.5 215 65.6
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 7.5e-73 277.7 215 65.1
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 1.3e-72 276.9 206 65.0
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 2.2e-72 276.2 188 68.1
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 2.2e-72 276.2 216 64.8
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 2.8e-72 275.8 215 63.7
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 2.8e-72 275.8 223 61.4
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 2.8e-72 275.8 195 70.3
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 3.7e-72 275.4 215 64.7
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 6.3e-72 274.6 193 69.4
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 1.1e-71 273.9 179 72.1
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 2.4e-71 272.7 215 61.9
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 3.1e-71 272.3 212 64.6
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 4.1e-71 271.9 225 60.0
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 4.1e-71 271.9 225 60.0
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 4.1e-71 271.9 225 60.0
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 4.1e-71 271.9 215 62.3
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 7.0e-71 271.2 224 60.3
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 9.1e-71 270.8 225 60.0
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 9.1e-71 270.8 225 60.0
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 4.5e-70 268.5 172 73.8
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 5.9e-70 268.1 224 60.3
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 7.7e-70 267.7 177 71.8
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 1.3e-69 266.9 225 59.6
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 1.7e-69 266.5 221 60.2
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 2.9e-69 265.8 222 60.4
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 3.8e-69 265.4 225 59.1
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 3.8e-69 265.4 209 65.1
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 8.5e-69 264.2 223 59.6
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 2.5e-68 262.7 209 63.6
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 4.2e-68 261.9 182 68.7
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 7.2e-68 261.2 206 64.1
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 9.4e-68 260.8 184 70.7
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 2.7e-67 259.2 191 61.8
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 8.0e-67 257.7 219 63.5
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 1.8e-66 256.5 222 58.1
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 2.8e-64 249.2 186 61.3
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 1.1e-63 247.3 215 60.0
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 7.0e-63 244.6 215 59.5
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 1.9e-60 236.5 214 59.3
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 1.6e-59 233.4 209 55.5
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 2.1e-59 233.0 175 67.4
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.4e-58 230.3 248 52.0
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.4e-58 230.3 248 52.0
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 3.4e-57 225.7 146 74.7
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 1.1e-55 220.7 163 66.3
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 2.7e-54 216.1 143 74.1
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.3e-53 213.8 144 70.1
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 3.4e-49 199.1 151 70.9
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 7.5e-49 198.0 141 68.1
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 4.9e-48 195.3 135 65.9
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 7.0e-47 191.4 165 54.5
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 7.0e-47 191.4 222 43.2
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 7.0e-47 191.4 220 42.3
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 5.6e-44 181.8 124 69.4
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 2.1e-43 179.9 137 65.0
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 3.6e-43 179.1 143 65.0
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 8.3e-40 167.9 141 56.0
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 3.2e-39 166.0 183 45.4
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 3.0e-37 159.5 211 46.4
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 5.1e-37 158.7 121 65.3
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 7.3e-36 154.8 160 46.2
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 2.8e-35 152.9 204 38.7
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 4.7e-35 152.1 149 43.0
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 3.1e-34 149.4 107 65.4
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 1.3e-32 144.1 155 43.9
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.9e-28 130.2 167 40.7
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 1.2e-27 127.5 89 68.5
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 6.0e-22 108.6 74 68.9
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 1.5e-20 104.0 77 63.6
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 1.9e-20 103.6 149 36.9
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 1.4e-15 87.4 65 63.1
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 1.9e-15 87.0 49 79.6
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 2.4e-15 86.7 69 55.1
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 2.7e-14 83.2 65 60.0
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 3.5e-14 82.8 62 64.5
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 3.0e-13 79.7 49 71.4
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 7.4e-12 75.1 43 74.4
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 1.1e-10 71.2 58 56.9
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 1.8e-10 70.5 56 58.9
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 2.4e-10 70.1 67 55.2
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 6.4e-08 62.0 63 54.0
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 6.4e-08 62.0 44 65.9
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 1.1e-07 61.2 91 35.2
CAN.G530.9 Capsicum annuum HOM05D000115 ORTHO05D000645 7.1e-07 58.5 38 71.1
Lsat_1_v5_gn_8_8220 Lactuca sativa HOM05D001543 ORTHO05D001722 1.6e-06 57.4 66 39.4
PGR142G3836 Punica granatum HOM05D000285 ORTHO05D000241 2.1e-06 57.0 68 39.7
EL10Ac4g07530 Beta vulgaris HOM05D000285 ORTHO05D000241 2.7e-06 56.6 69 39.1
Eucgr.J02246 Eucalyptus grandis HOM05D000285 ORTHO05D000241 2.7e-06 56.6 66 40.9
CANSAT21G2006 Cannabis sativa HOM05D000285 ORTHO05D000241 3.5e-06 56.2 70 42.9
Rhsim03G0179900 Rhododendron simsii HOM05D003145 ORTHO05D003586 3.5e-06 56.2 82 34.1
COL.COLO4_29125 Corchorus olitorius HOM05D000285 ORTHO05D009409 4.6e-06 55.8 68 38.2
FvH4_6g51431 Fragaria vesca HOM05D000285 ORTHO05D000241 4.6e-06 55.8 68 36.8
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 4.6e-06 55.8 68 36.8
RcHm_v2.0_Chr2g0173111 Rosa chinensis HOM05D000285 ORTHO05D000241 4.6e-06 55.8 68 36.8
vmacro18288 Vaccinium macrocarpon HOM05D000285 ORTHO05D000241 6.0e-06 55.5 68 38.2
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 7.9e-06 55.1 74 35.1
Duzib213G0581 Durio zibethinus HOM05D000285 ORTHO05D000241 7.9e-06 55.1 69 37.7
Gohir.A03G191900 Gossypium hirsutum HOM05D000561 ORTHO05D000514 7.9e-06 55.1 69 34.8
Gohir.A09G029500 Gossypium hirsutum HOM05D000285 ORTHO05D000241 7.9e-06 55.1 99 29.3
Gohir.D02G212800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 7.9e-06 55.1 69 34.8
Gohir.D09G029200 Gossypium hirsutum HOM05D000285 ORTHO05D000241 7.9e-06 55.1 99 29.3
Gorai.005G240800 Gossypium raimondii HOM05D000561 ORTHO05D000514 7.9e-06 55.1 69 34.8
Gorai.006G034100 Gossypium raimondii HOM05D000285 ORTHO05D000241 7.9e-06 55.1 99 29.3
Lj1A40G69 Lonicera japonica HOM05D001495 ORTHO05D001391 7.9e-06 55.1 106 32.1
MD09G1199800 Malus domestica HOM05D000428 ORTHO05D000582 7.9e-06 55.1 71 40.8
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 7.9e-06 55.1 33 69.7
Prupe.3G292100 Prunus persica HOM05D000285 ORTHO05D000241 7.9e-06 55.1 110 31.8


User provided reference genes

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