Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 1.2e-225 786.2 393 100.0
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 3.0e-136 489.2 361 69.8
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 8.4e-131 471.1 339 70.8
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 8.4e-131 471.1 341 70.4
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 1.1e-130 470.7 342 70.2
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 2.4e-117 426.4 345 65.8
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 3.1e-117 426.0 306 71.2
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 4.1e-117 425.6 345 65.8
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 5.9e-116 421.8 289 73.4
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 5.0e-115 418.7 309 70.6
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 5.0e-115 418.7 351 63.2
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 6.5e-115 418.3 315 70.2
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 1.4e-114 417.2 328 66.8
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 1.4e-114 417.2 330 63.9
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 2.5e-114 416.4 330 66.1
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 2.5e-114 416.4 291 70.8
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 3.2e-114 416.0 321 67.3
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 7.2e-114 414.8 330 64.2
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 1.2e-113 414.1 307 70.4
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 3.6e-113 412.5 365 61.9
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 4.6e-113 412.1 354 63.0
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 6.1e-113 411.8 308 69.2
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 1.0e-112 411.0 329 66.3
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 1.3e-112 410.6 305 68.5
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 1.8e-112 410.2 330 63.6
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 2.3e-112 409.8 291 71.1
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 3.9e-112 409.1 319 66.5
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 3.9e-112 409.1 313 69.0
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 3.9e-112 409.1 402 57.2
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 6.7e-112 408.3 312 67.6
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 1.5e-111 407.1 303 70.6
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 4.3e-111 405.6 341 63.3
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 1.6e-110 403.7 361 61.8
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 8.2e-110 401.4 307 64.8
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 1.1e-109 401.0 305 67.2
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 2.4e-109 399.8 333 63.4
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 4.1e-109 399.1 352 59.4
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 4.1e-109 399.1 292 69.9
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 5.3e-109 398.7 291 70.1
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 6.9e-109 398.3 348 62.9
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 6.9e-109 398.3 332 61.7
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 1.2e-108 397.5 352 59.1
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 1.2e-108 397.5 307 64.8
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 2.0e-108 396.7 297 68.0
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 3.4e-108 396.0 291 68.4
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 4.5e-108 395.6 290 68.6
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 7.7e-108 394.8 291 67.7
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 1.0e-107 394.4 347 62.5
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 1.7e-107 393.7 296 67.6
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 6.5e-107 391.7 352 60.5
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 6.5e-107 391.7 315 64.1
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 1.4e-106 390.6 363 58.7
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 2.5e-106 389.8 308 65.3
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 3.2e-106 389.4 315 64.8
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 7.2e-106 388.3 291 67.7
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 2.1e-105 386.7 350 59.4
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 2.7e-105 386.3 355 59.4
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 3.6e-105 386.0 326 62.6
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 1.0e-104 384.4 340 59.7
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 1.4e-104 384.0 344 59.6
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 3.0e-104 382.9 291 66.3
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 3.0e-104 382.9 305 62.6
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 3.0e-104 382.9 305 64.3
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 3.9e-104 382.5 291 66.7
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 5.1e-104 382.1 344 58.7
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 6.7e-104 381.7 291 66.7
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 8.8e-104 381.3 309 63.8
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 8.8e-104 381.3 306 64.1
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 1.5e-103 380.6 292 65.8
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 2.0e-103 380.2 293 65.9
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 2.0e-103 380.2 293 66.2
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 2.6e-103 379.8 291 64.9
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 2.6e-103 379.8 291 64.9
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 3.3e-103 379.4 332 61.4
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 5.7e-103 378.6 291 66.3
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 9.7e-103 377.9 308 63.6
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 2.2e-102 376.7 291 67.0
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 3.7e-102 375.9 295 66.1
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 3.7e-102 375.9 345 58.0
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 1.8e-101 373.6 300 63.7
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 3.1e-101 372.9 291 64.9
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 3.1e-101 372.9 337 59.1
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 2.0e-100 370.2 342 60.5
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 1.0e-99 367.9 290 65.5
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 2.2e-99 366.7 265 71.7
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 2.5e-98 363.2 268 66.4
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 1.2e-97 360.9 371 55.5
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 2.0e-95 353.6 291 62.2
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 2.6e-95 353.2 271 65.3
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 2.2e-94 350.1 250 70.4
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 8.2e-94 348.2 295 59.7
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 1.1e-93 347.8 329 57.4
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 6.5e-91 338.6 288 62.2
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 5.2e-88 328.9 295 61.4
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 1.7e-86 323.9 294 59.9
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 1.2e-84 317.8 252 65.5
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 3.5e-84 316.2 337 53.1
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 8.0e-81 305.1 308 53.2
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 3.1e-77 293.1 337 49.0
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 4.1e-77 292.7 311 48.9
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 5.4e-77 292.4 336 47.6
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 2.2e-70 270.4 299 53.8
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 3.1e-69 266.5 319 46.4
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 1.2e-65 254.6 353 47.6
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 3.4e-63 246.5 215 62.3
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 7.8e-60 235.3 208 63.5
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 1.7e-59 234.2 176 68.8
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 7.3e-58 228.8 266 51.5
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 2.8e-57 226.9 270 47.0
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 1.4e-56 224.6 244 52.9
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 1.8e-56 224.2 174 66.1
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 8.9e-48 195.3 238 49.2
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 1.4e-45 188.0 393 34.1
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 7.8e-44 182.2 123 75.6
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 6.8e-40 169.1 353 33.4
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 7.1e-37 159.1 229 45.9
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 7.1e-29 132.5 99 62.6
Lalb_Chr02g0144651 Lupinus albus HOM05D006587 ORTHO05D008487 8.1e-17 92.4 63 68.3
QL06p003531 Quercus lobata HOM05D006587 ORTHO05D008487 2.4e-16 90.9 50 82.0
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 1.8e-11 74.7 76 56.6
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 3.0e-11 73.9 42 90.5
Lsat_1_v5_gn_9_31900 Lactuca sativa HOM05D006587 ORTHO05D011576 9.6e-10 68.9 62 58.1
Gorai.004G106600 Gossypium raimondii HOM05D006587 ORTHO05D008487 8.2e-09 65.9 53 64.2
SEGI_15408 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 1.1e-08 65.5 52 57.7
arahy.Tifrunner.gnm1.ann1.Y836FI Arachis hypogaea HOM05D000158 ORTHO05D000197 3.1e-08 63.9 42 66.7
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 1.2e-07 62.0 38 86.8
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 1.5e-07 61.6 57 49.1
Gorai.012G092500 Gossypium raimondii HOM05D006587 ORTHO05D008487 1.5e-07 61.6 46 63.0


User provided reference genes

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